ExperimentSetReplicate

ExperimentSet4DNESP9J7ZRT
released
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ChIP-seq on extra embryonic stem cells (XEN) from mouse (control)

   December 4th, 2023 at 10:42pm
Source Publication
Systematic mapping and modeling of 3D enhancer-promoter interactions in early mouse embryonic lineages reveal regulatory principles that determine the levels and cell-type specificity of gene expression.
Murphy D, Salataj E, et al., bioRxiv : the preprint server for biology 2023

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
stem cells
Sample 
extraembryonic cell
Experiment Type(s) 
ChIP-seq
Modification Type 
None
Treatment Type 
None
Assay Details 
Target: None (Control)

2 Processed Files

Experiment
File
File Type
File Size
Experiment
4DNEX4AEZAVP
Bio Rep 1, Tec Rep 1
ChIP-seq on extraembryonic cell
File
4DNFIOSMSYAV
read positions (bed)
125.96 MB
Experiment
4DNEX9B4AOSJ
Bio Rep 2, Tec Rep 1
ChIP-seq on extraembryonic cell
File
4DNFIYRMDM8G
read positions (bed)
156.72 MB

Quality Metrics

Experiment
For File
PCR Bottleneck Coefficient (PBC)
Nonredundant Read Fraction (NRF)
Filtered & Deduped Reads
Report
Details
Experiment
4DNEX4AEZAVP
Bio Rep 1, Tec Rep 1
ChIP-seq on extraembryonic cell
File
Read Positions (bed)
4DNFIOSMSYAV
0.88
0.87
18.91m
Experiment
4DNEX9B4AOSJ
Bio Rep 2, Tec Rep 1
ChIP-seq on extraembryonic cell
File
Read Positions (bed)
4DNFIYRMDM8G
0.85
0.84
23.81m