ExperimentSetReplicate

ExperimentSet4DNESPPB44X7
released
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in situ Hi-C on microdissected cerebellar vermis lobule IV/V from C57BL/6 mouse postnatal day 56

   March 26th, 2022 at 10:32pm
Source Publication
Mega-Enhancer Bodies Organize Neuronal Long Genes in the Cerebellum.
Zhao Z, Parra OP, et al., bioRxiv : the preprint server for biology 2023

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
tissue
Sample 
cerebellum vermis lobule
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: MboI

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESPPB44X7
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIFWVT8R8
341.1m
63.923%
15.386%
20.691%
Experiment
4DNEXGUN7YDX
Bio Rep 1, Tec Rep 1
in situ Hi-C on cerebellum vermis lobule with MboI
File
Contact List-replicate (pairs)
4DNFIYCWW64V
167.46m
64.829%
15.316%
19.854%
Experiment
4DNEXVKBFMO1
Bio Rep 2, Tec Rep 1
in situ Hi-C on cerebellum vermis lobule with MboI
File
Contact List-replicate (pairs)
4DNFI8V1GQOK
173.63m
63.049%
15.453%
21.498%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESPPB44X7
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIN3WQWSB
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXGUN7YDX
Bio Rep 1, Tec Rep 1
in situ Hi-C on cerebellum vermis lobule with MboI
File
Alignments (bam)
4DNFIOZXMWWW
425.18m
19.186%
22.669%
15.098%
3.661%
0.045%
Experiment
4DNEXVKBFMO1
Bio Rep 2, Tec Rep 1
in situ Hi-C on cerebellum vermis lobule with MboI
File
Alignments (bam)
4DNFIMOJQVMJ
412m
18.326%
22.322%
13.981%
3.227%
0.053%