ExperimentSetReplicate

ExperimentSet4DNESPU7C3O2
released
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Replicates of Hi-C on 42 day old adult C57X129 mouse cardiomyocytes

   April 10th, 2019 at 5:23pm

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
primary cells
Sample 
cardiac muscle cell
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: MboI

12 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Details
From Multiple Experiments
4DNESPU7C3O2
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIEXIPDCK
2.75 billion
44.421%
23.415%
32.164%
Experiment
4DNEXTBOOM5L
Bio Rep 1, Tec Rep 1
in situ Hi-C on cardiac muscle cell with MboI
File
Contact List-replicate (pairs)
4DNFI4TNTBOE
1.02 billion
44.904%
23.687%
31.409%
Experiment
4DNEXPB1UJF4
Bio Rep 2, Tec Rep 1
in situ Hi-C on cardiac muscle cell with MboI
File
Contact List-replicate (pairs)
4DNFIG94E296
860.77m
45.237%
22.451%
32.312%
Experiment
4DNEXQJ3PW7E
Bio Rep 3, Tec Rep 1
in situ Hi-C on cardiac muscle cell with MboI
File
Contact List-replicate (pairs)
4DNFIBZOFV4R
870.17m
43.047%
24.051%
32.902%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESPU7C3O2
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIFDUT3Y5
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXTBOOM5L
Bio Rep 1, Tec Rep 1
in situ Hi-C on cardiac muscle cell with MboI
File
Alignments (bam)
4DNFI24MX6NU
1.72 billion
4.736%
12.395%
14.753%
8.795%
0.226%
Experiment
4DNEXPB1UJF4
Bio Rep 2, Tec Rep 1
in situ Hi-C on cardiac muscle cell with MboI
File
Alignments (bam)
4DNFIN2JI4KO
1.54 billion
4.614%
12.545%
17.616%
9.292%
0.206%
Experiment
4DNEXQJ3PW7E
Bio Rep 3, Tec Rep 1
in situ Hi-C on cardiac muscle cell with MboI
File
Alignments (bam)
4DNFIV7RIZY5
1.55 billion
4.56%
12.347%
18.143%
8.967%
0.216%