ExperimentSetReplicate

ExperimentSet4DNESQ9ZWU97
released
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in situ Hi-C on olfactory sensory neurons sorted from SARS-Cov2 infected human olfactory epithelium - Patient116

   February 11th, 2021 at 4:40pm
Source Publication
Non-cell-autonomous disruption of nuclear architecture as a potential cause of COVID-19-induced anosmia.
Zazhytska M, Kodra A, et al., Cell 2022

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
primary cells
Sample 
olfactory receptor cell
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: MseI

8 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESQ9ZWU97
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIPYFMJIR
276.11m
29.566%
30.404%
40.03%
Experiment
4DNEX4L94HOX
Bio Rep 1, Tec Rep 1
in situ Hi-C on olfactory receptor cell with MseI
File
Contact List-replicate (pairs)
4DNFIET11GFD
276.11m
29.566%
30.404%
40.03%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESQ9ZWU97
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIPQD9QHW
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEX4L94HOX
Bio Rep 1, Tec Rep 1
in situ Hi-C on olfactory receptor cell with MseI
File
Alignments (bam)
4DNFIN3TOGZN
699.82m
7.411%
16.053%
28.741%
8.341%
0.279%