ExperimentSetReplicate

ExperimentSet4DNESQAI59VQ
released
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RNA-Seq on untreated NIH 3T3 cells

   October 18th, 2022 at 3:53pm
Source Publication
TCF-1 promotes chromatin interactions across topologically associating domains in T cell progenitors.
Wang W, Chandra A, et al., Nature immunology 2022

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
immortalized cells
Sample 
NIH3T3
Experiment Type(s) 
RNA-seq
Modification Type 
None
Treatment Type 
Transient Transfection
Assay Details 
None

10 Processed Files

Quality Metrics

Experiment
For File
Total mapped reads (genome)
Total uniquely mapped reads (genome)
Details
Experiment
4DNEXBLCTGX5
Bio Rep 1, Tec Rep 1
RNA-seq on NIH3T3
File
Read Positions (bam)
4DNFIXJWUJLR
32.13m
25.82m
Experiment
4DNEXPI3UASK
Bio Rep 2, Tec Rep 1
RNA-seq on NIH3T3
File
Read Positions (bam)
4DNFI1ESQ1N2
35.19m
28.29m
Experiment
For File
Reads mapped to protein-coding genes
Reads mapped to rRNA
Details
Experiment
4DNEXBLCTGX5
Bio Rep 1, Tec Rep 1
RNA-seq on NIH3T3
File
Gene Expression (tsv)
4DNFINP48ACO
19.17m
270.1k
Experiment
4DNEXPI3UASK
Bio Rep 2, Tec Rep 1
RNA-seq on NIH3T3
File
Gene Expression (tsv)
4DNFILPP4QAX
20.78m
291.44k