ExperimentSetReplicate

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ExperimentSet4DNESQDM1ZJH
released
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Replicates of in situ Hi-C on compound heterozygous Crispr modified TBX5 LOF with 1 bp deletion causing frameshift and 8 bp insertion in WTC-11 iPSC cells differentiated for 6 days to cardiac precursors.

   November 27th, 2019 at 7:05pm

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
in vitro differentiated cells
Sample 
WTC-11 differentiated to cardiac muscle myoblast
Experiment Type(s) 
in situ Hi-C
Modification Type 
Crispr
Treatment Type 
None
Assay Details 
Enzyme: MboI

10 Processed Files

    Explore Data

Loading
Experiment
File
File Type
File Size
Notes
From Multiple Experiments
4DNESQDM1ZJH
Multiple Experiments
File
4DNFIVXX74CQ
contact list-combined (pairs)
28.18 GB
-
File
4DNFIZX79UT2
contact matrix (hic)
12.55 GB
-
File
4DNFIDDBCJWJ
contact matrix (mcool)
8.7 GB
File
4DNFILTGJVFL
boundaries (bed)
141.01 kB
-
File
4DNFIDFW5PHL
insulation score-diamond (bw)
8.12 MB
-
File
4DNFINYDQRXL
compartments (bw)
206.64 kB
-
Experiment
4DNEXLXV7FWH
Bio Rep 1, Tec Rep 1
in situ Hi-C on WTC-11 differentiated to cardiac muscle myoblast with MboI
File
4DNFIG21HVTW
alignments (bam)
265.42 GB
-
File
4DNFI9XYGF3H
contact list-replicate (pairs)
15.89 GB
-
Experiment
4DNEXXHUT6KM
Bio Rep 2, Tec Rep 1
in situ Hi-C on WTC-11 differentiated to cardiac muscle myoblast with MboI
File
4DNFIDFC1K2G
alignments (bam)
245.03 GB
-
File
4DNFI35QYMMV
contact list-replicate (pairs)
14.34 GB
-

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Details
From Multiple Experiments
4DNESQDM1ZJH
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIVXX74CQ
1.63 billion
47.488%
16.815%
35.697%
Experiment
4DNEXLXV7FWH
Bio Rep 1, Tec Rep 1
in situ Hi-C on WTC-11 differentiated to cardiac muscle myoblast with MboI
File
Contact List-replicate (pairs)
4DNFI9XYGF3H
859.47m
46.196%
16.924%
36.88%
Experiment
4DNEXXHUT6KM
Bio Rep 2, Tec Rep 1
in situ Hi-C on WTC-11 differentiated to cardiac muscle myoblast with MboI
File
Contact List-replicate (pairs)
4DNFI35QYMMV
774.69m
48.92%
16.695%
34.384%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESQDM1ZJH
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIDDBCJWJ
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXLXV7FWH
Bio Rep 1, Tec Rep 1
in situ Hi-C on WTC-11 differentiated to cardiac muscle myoblast with MboI
File
Alignments (bam)
4DNFIG21HVTW
1.64 billion
4.558%
7.673%
28.083%
7.244%
0.173%
Experiment
4DNEXXHUT6KM
Bio Rep 2, Tec Rep 1
in situ Hi-C on WTC-11 differentiated to cardiac muscle myoblast with MboI
File
Alignments (bam)
4DNFIDFC1K2G
1.48 billion
4.583%
8.046%
26.368%
8.61%
0.16%