ExperimentSetReplicate

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ExperimentSet4DNESRA7OFS4
released
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HiC experiment done on astrocyte of the cerebellum (HAc).

   October 4th, 2018 at 7:42pm

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
primary cells
Sample 
astrocyte of the cerebellum
Experiment Type(s) 
Dilution Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: HindIII

10 Processed Files

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Experiment
File
File Type
File Size
Notes
From Multiple Experiments
4DNESRA7OFS4
Multiple Experiments
File
4DNFIQWVV324
contact list-combined (pairs)
7.1 GB
-
File
4DNFITPO1WTY
contact matrix (hic)
3.75 GB
-
File
4DNFIWCAQUIK
contact matrix (mcool)
4.14 GB
File
4DNFI5PI2962
boundaries (bed)
133.5 kB
-
File
4DNFIPZ6SBXY
insulation score-diamond (bw)
3.88 MB
-
File
4DNFI6STN7SU
compartments (bw)
203.81 kB
-
Experiment
4DNEXZ1ECEC1
Bio Rep 2, Tec Rep 1
Dilution Hi-C on astrocyte of the cerebellum with HindIII
File
4DNFIITAGPA2
alignments (bam)
29.88 GB
-
File
4DNFISNLJWVH
contact list-replicate (pairs)
3.75 GB
-
Experiment
4DNEXT83K6AM
Bio Rep 1, Tec Rep 1
Dilution Hi-C on astrocyte of the cerebellum with HindIII
File
4DNFIV4FCA5B
alignments (bam)
29.9 GB
-
File
4DNFIVSPDVD2
contact list-replicate (pairs)
3.71 GB
-

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Details
From Multiple Experiments
4DNESRA7OFS4
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIQWVV324
428.48m
58.645%
19.263%
22.092%
Experiment
4DNEXZ1ECEC1
Bio Rep 2, Tec Rep 1
Dilution Hi-C on astrocyte of the cerebellum with HindIII
File
Contact List-replicate (pairs)
4DNFISNLJWVH
215.31m
57.393%
20.289%
22.318%
Experiment
4DNEXT83K6AM
Bio Rep 1, Tec Rep 1
Dilution Hi-C on astrocyte of the cerebellum with HindIII
File
Contact List-replicate (pairs)
4DNFIVSPDVD2
213.16m
59.909%
18.227%
21.864%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESRA7OFS4
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIWCAQUIK
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXZ1ECEC1
Bio Rep 2, Tec Rep 1
Dilution Hi-C on astrocyte of the cerebellum with HindIII
File
Alignments (bam)
4DNFIITAGPA2
360.37m
13.663%
13.983%
12.603%
0.001%
0.093%
Experiment
4DNEXT83K6AM
Bio Rep 1, Tec Rep 1
Dilution Hi-C on astrocyte of the cerebellum with HindIII
File
Alignments (bam)
4DNFIV4FCA5B
354.71m
14.156%
13.811%
11.937%
0.001%
0.091%