ExperimentSetReplicate

ExperimentSet4DNESREEJFEH
released
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Replicates of in situ Hi-C on control Crispr treated but unmodified WTC-11 iPSC cells differentiated for 11 days to cardiac myocytes

   November 27th, 2019 at 7:05pm

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
in vitro differentiated cells
Sample 
WTC-11 differentiated to primitive cardiac myocyte
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: MboI

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Details
From Multiple Experiments
4DNESREEJFEH
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIO2OGV9A
1.77 billion
34.613%
22.17%
43.217%
Experiment
4DNEX22BTA85
Bio Rep 1, Tec Rep 1
in situ Hi-C on WTC-11 differentiated to primitive cardiac myocyte with MboI
File
Contact List-replicate (pairs)
4DNFIS49VTJI
939.86m
35.527%
19.811%
44.663%
Experiment
4DNEXZJIHVQW
Bio Rep 2, Tec Rep 1
in situ Hi-C on WTC-11 differentiated to primitive cardiac myocyte with MboI
File
Contact List-replicate (pairs)
4DNFIY4TG9Y8
833.67m
33.583%
24.831%
41.586%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESREEJFEH
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIYN1QEJU
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEX22BTA85
Bio Rep 1, Tec Rep 1
in situ Hi-C on WTC-11 differentiated to primitive cardiac myocyte with MboI
File
Alignments (bam)
4DNFIWB9KU19
1.7 billion
6.314%
8.118%
19.908%
10.305%
0.193%
Experiment
4DNEXZJIHVQW
Bio Rep 2, Tec Rep 1
in situ Hi-C on WTC-11 differentiated to primitive cardiac myocyte with MboI
File
Alignments (bam)
4DNFIDA19RAM
1.46 billion
6.327%
8.75%
17.7%
10.276%
0.229%