ExperimentSetReplicate

ExperimentSet4DNESSMH31W6
released
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RNA-Seq on Scid.adh cells(empty vector)

   October 18th, 2022 at 3:53pm
Source Publication
TCF-1 promotes chromatin interactions across topologically associating domains in T cell progenitors.
Wang W, Chandra A, et al., Nature immunology 2022

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
immortalized cells
Sample 
scid.adh
Experiment Type(s) 
RNA-seq
Modification Type 
None
Treatment Type 
None
Assay Details 
None

10 Processed Files

Quality Metrics

Experiment
For File
Total mapped reads (genome)
Total uniquely mapped reads (genome)
Details
Experiment
4DNEXP65A7IH
Bio Rep 1, Tec Rep 1
RNA-seq on scid.adh
File
Read Positions (bam)
4DNFI3YD47BW
13.31m
9.82m
Experiment
4DNEX2BE4B2G
Bio Rep 2, Tec Rep 1
RNA-seq on scid.adh
File
Read Positions (bam)
4DNFIZEVW9QX
12.8m
9.51m
Experiment
For File
Reads mapped to protein-coding genes
Reads mapped to rRNA
Details
Experiment
4DNEXP65A7IH
Bio Rep 1, Tec Rep 1
RNA-seq on scid.adh
File
Gene Expression (tsv)
4DNFIM4F7V16
6.68m
226.46k
Experiment
4DNEX2BE4B2G
Bio Rep 2, Tec Rep 1
RNA-seq on scid.adh
File
Gene Expression (tsv)
4DNFIK9W1WX7
6.23m
274.68k