ExperimentSetReplicate

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ExperimentSet4DNEST9AVULS
released
View JSON

HiC experiment done on SK-MEL-5

   May 5th, 2017 at 6:43pm

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
SK-MEL-5
Experiment Type(s) 
Dilution Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: HindIII

10 Processed Files

    Explore Data

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Experiment
File
File Type
File Size
Notes
From Multiple Experiments
4DNEST9AVULS
Multiple Experiments
File
4DNFIE9XZEIP
contact list-combined (pairs)
2.03 GB
-
File
4DNFITVGFNYZ
contact matrix (hic)
1.44 GB
-
File
4DNFICYNMTJG
contact matrix (mcool)
1.34 GB
File
4DNFINKCKCZ9
boundaries (bed)
221.89 kB
-
File
4DNFIS6FQTHO
insulation score-diamond (bw)
4.07 MB
-
File
4DNFIPZPGF5B
compartments (bw)
206.27 kB
-
Experiment
4DNEX66WBPZF
Bio Rep 1, Tec Rep 1
Dilution Hi-C on SK-MEL-5 with HindIII
File
4DNFIWO8VZ8F
alignments (bam)
11.88 GB
-
File
4DNFIUSHIK15
contact list-replicate (pairs)
448.81 MB
-
Experiment
4DNEXIHCBS53
Bio Rep 2, Tec Rep 1
Dilution Hi-C on SK-MEL-5 with HindIII
File
4DNFIDSVQC5O
alignments (bam)
16.55 GB
-
File
4DNFIFTMART5
contact list-replicate (pairs)
1.68 GB
-

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Details
From Multiple Experiments
4DNEST9AVULS
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIE9XZEIP
119.16m
40.481%
35.058%
24.461%
Experiment
4DNEX66WBPZF
Bio Rep 1, Tec Rep 1
Dilution Hi-C on SK-MEL-5 with HindIII
File
Contact List-replicate (pairs)
4DNFIUSHIK15
24.73m
36.525%
41.547%
21.929%
Experiment
4DNEXIHCBS53
Bio Rep 2, Tec Rep 1
Dilution Hi-C on SK-MEL-5 with HindIII
File
Contact List-replicate (pairs)
4DNFIFTMART5
94.44m
41.517%
33.359%
25.124%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNEST9AVULS
Multiple Experiments
File
Contact Matrix (mcool)
4DNFICYNMTJG
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEX66WBPZF
Bio Rep 1, Tec Rep 1
Dilution Hi-C on SK-MEL-5 with HindIII
File
Alignments (bam)
4DNFIWO8VZ8F
148.05m
13.031%
14.106%
56.161%
0.001%
0.045%
Experiment
4DNEXIHCBS53
Bio Rep 2, Tec Rep 1
Dilution Hi-C on SK-MEL-5 with HindIII
File
Alignments (bam)
4DNFIDSVQC5O
155.43m
12.539%
14.276%
12.429%
0.001%
0.172%