ExperimentSetReplicate

ExperimentSet4DNESTNG39BO
released
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Chromatin tracing (ORCA) of a 3-Mb region at the chr3 locus in mESC CTCF-AID untreated

   March 17th, 2023 at 9:29pm
Source Publication
Loop stacking organizes genome folding from TADs to chromosomes.
Hafner A, Park M, et al., Molecular cell 2023

Note on FOF-CT file format  

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
stem cells
Sample 
ES-E14TG2a with CTCF-AID
Experiment Type(s) 
multiplexed FISH
Modification Type 
None
Treatment Type 
None
Assay Details 
  1. Target: 3-Mb chr6 (mouse)
  2. Target: 3-Mb chr6 (mouse), Geminin (mouse), Chromosomes
Channel
Path
 
ch02
3-Mb chr6 (mouse) targeted by oligo probe library, readout oligo library (with Cy5-labeled imaging oligos)
ch01
3-Mb chr6 (mouse) targeted by oligo probe library (with Cy3-labeled fiducial oligo probes)

10 Processed Files

Experiment
File
File Type
File Size
Experiment
4DNEXZU2N5SB
Bio Rep 1, Tec Rep 1
multiplexed FISH on ES-E14TG2a with CTCF-AID
File
4DNFI2OG3IPB
FOF-CT - DNA-spot/trace core (csv)
8.75 MB
File
4DNFILX3U94J
FOF-CT - spot quality (csv)
2.52 MB
File
4DNFITJOEPG1
FOF-CT - trace data (csv)
25.17 kB
Experiment
4DNEX84R1VFO
Bio Rep 1, Tec Rep 2
multiplexed FISH on ES-E14TG2a with CTCF-AID
File
4DNFIU5X9MXT
FOF-CT - DNA-spot/trace core (csv)
8.49 MB
File
4DNFIJG6KVNE
FOF-CT - spot quality (csv)
2.44 MB
File
4DNFI6MLLS3Z
FOF-CT - trace data (csv)
26.22 kB
Experiment
4DNEXRMBZE8V
Bio Rep 2, Tec Rep 1
multiplexed FISH on ES-E14TG2a with CTCF-AID
File
4DNFIIQ8YIG4
FOF-CT - DNA-spot/trace core (csv)
16.17 MB
File
4DNFIO5JJB4K
FOF-CT - spot quality (csv)
4.49 MB
File
4DNFIKJAPGQQ
FOF-CT - trace data (csv)
44.33 kB
File
4DNFIP9SXUQC
FOF-CT - cell data (csv)
57.21 kB