ExperimentSetReplicate

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ExperimentSet4DNESU7SEN5K
released
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HiC experiment done on brain pericyte (HBVP).

   October 4th, 2018 at 7:42pm

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
primary cells
Sample 
brain pericyte
Experiment Type(s) 
Dilution Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: HindIII

10 Processed Files

    Explore Data

Loading
Experiment
File
File Type
File Size
Notes
From Multiple Experiments
4DNESU7SEN5K
Multiple Experiments
File
4DNFIM4MJAB9
contact list-combined (pairs)
3.8 GB
-
File
4DNFIXLYR32S
contact matrix (hic)
587.36 MB
-
File
4DNFIL6BHWZL
contact matrix (mcool)
719.03 MB
File
4DNFIK7EMPQD
boundaries (bed)
243.24 kB
-
File
4DNFIUXP4WEE
insulation score-diamond (bw)
3.98 MB
-
File
4DNFI6TQOWFZ
compartments (bw)
204.76 kB
-
Experiment
4DNEXV6FOCE7
Bio Rep 2, Tec Rep 1
Dilution Hi-C on brain pericyte with HindIII
File
4DNFIIOIIDO5
alignments (bam)
20.87 GB
-
File
4DNFIT6XTO39
contact list-replicate (pairs)
1.86 GB
-
Experiment
4DNEXKGWUSH8
Bio Rep 1, Tec Rep 1
Dilution Hi-C on brain pericyte with HindIII
File
4DNFIYHX5TI7
alignments (bam)
22.33 GB
-
File
4DNFIYM6F8Y5
contact list-replicate (pairs)
2.12 GB
-

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Details
From Multiple Experiments
4DNESU7SEN5K
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIM4MJAB9
241.16m
17.106%
74.149%
8.745%
Experiment
4DNEXV6FOCE7
Bio Rep 2, Tec Rep 1
Dilution Hi-C on brain pericyte with HindIII
File
Contact List-replicate (pairs)
4DNFIT6XTO39
114.08m
12.588%
80.971%
6.441%
Experiment
4DNEXKGWUSH8
Bio Rep 1, Tec Rep 1
Dilution Hi-C on brain pericyte with HindIII
File
Contact List-replicate (pairs)
4DNFIYM6F8Y5
127.08m
21.162%
68.025%
10.813%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESU7SEN5K
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIL6BHWZL
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXV6FOCE7
Bio Rep 2, Tec Rep 1
Dilution Hi-C on brain pericyte with HindIII
File
Alignments (bam)
4DNFIIOIIDO5
169.29m
15.942%
13.655%
3.01%
0.001%
0.126%
Experiment
4DNEXKGWUSH8
Bio Rep 1, Tec Rep 1
Dilution Hi-C on brain pericyte with HindIII
File
Alignments (bam)
4DNFIYHX5TI7
180.02m
13.006%
13.546%
2.856%
0.001%
0.116%