ExperimentSetReplicate

ExperimentSet4DNESUB35TII
released
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dilution Hi-C on CC2551 with HindIII and bio-dCTP

   April 9th, 2017 at 5:34pm
Source Publication
A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping.
Rao SS, Huntley MH, et al., Cell 2014

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
primary cells
Sample 
CC-2551
Experiment Type(s) 
Dilution Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: HindIII

8 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESUB35TII
Multiple Experiments
File
Contact List-combined (pairs)
4DNFI8HHP7VN
418.71m
48.208%
17.932%
33.861%
Experiment
4DNEXOTMVPJN
Bio Rep 1, Tec Rep 1
Dilution Hi-C on CC-2551 with HindIII
File
Contact List-replicate (pairs)
4DNFIEBHQU8O
418.71m
48.208%
17.932%
33.861%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESUB35TII
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIWCH6ADP
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXOTMVPJN
Bio Rep 1, Tec Rep 1
Dilution Hi-C on CC-2551 with HindIII
File
Alignments (bam)
4DNFIMPBTBKI
530.97m
6.547%
8.421%
3.129%
3.046%
0.221%