ExperimentSetReplicate

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ExperimentSet4DNESWL6EBND
released
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Replicates of in situ Hi-C on control Crispr treated but unmodified WTC-11 iPSC cells differentiated for 6 days to cardiac precursors.

   November 27th, 2019 at 7:05pm

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
in vitro differentiated cells
Sample 
WTC-11 differentiated to cardiac muscle myoblast
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: MboI

10 Processed Files

    Explore Data

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Experiment
File
File Type
File Size
Notes
From Multiple Experiments
4DNESWL6EBND
Multiple Experiments
File
4DNFIJ45YF93
contact list-combined (pairs)
28.03 GB
-
File
4DNFI86G6QZJ
contact matrix (hic)
13.09 GB
-
File
4DNFIW8DBZLN
contact matrix (mcool)
9.04 GB
File
4DNFIPZSF644
boundaries (bed)
141.41 kB
-
File
4DNFI3CU2ES6
insulation score-diamond (bw)
8.12 MB
-
File
4DNFIR7DCJJP
compartments (bw)
207.37 kB
-
Experiment
4DNEXM6OLFTL
Bio Rep 1, Tec Rep 1
in situ Hi-C on WTC-11 differentiated to cardiac muscle myoblast with MboI
File
4DNFIHILD844
alignments (bam)
262.97 GB
-
File
4DNFIKRKDJTL
contact list-replicate (pairs)
15.82 GB
-
Experiment
4DNEXULCFZLY
Bio Rep 2, Tec Rep 1
in situ Hi-C on WTC-11 differentiated to cardiac muscle myoblast with MboI
File
4DNFIFQGQWVR
alignments (bam)
245.4 GB
-
File
4DNFI5HRNCUH
contact list-replicate (pairs)
14.25 GB
-

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Details
From Multiple Experiments
4DNESWL6EBND
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIJ45YF93
1.62 billion
42.642%
17.556%
39.802%
Experiment
4DNEXM6OLFTL
Bio Rep 1, Tec Rep 1
in situ Hi-C on WTC-11 differentiated to cardiac muscle myoblast with MboI
File
Contact List-replicate (pairs)
4DNFIKRKDJTL
854.42m
39.41%
18.74%
41.85%
Experiment
4DNEXULCFZLY
Bio Rep 2, Tec Rep 1
in situ Hi-C on WTC-11 differentiated to cardiac muscle myoblast with MboI
File
Contact List-replicate (pairs)
4DNFI5HRNCUH
766.8m
46.243%
16.237%
37.52%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESWL6EBND
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIW8DBZLN
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXM6OLFTL
Bio Rep 1, Tec Rep 1
in situ Hi-C on WTC-11 differentiated to cardiac muscle myoblast with MboI
File
Alignments (bam)
4DNFIHILD844
1.7 billion
4.332%
7.791%
31.258%
6.325%
0.162%
Experiment
4DNEXULCFZLY
Bio Rep 2, Tec Rep 1
in situ Hi-C on WTC-11 differentiated to cardiac muscle myoblast with MboI
File
Alignments (bam)
4DNFIFQGQWVR
1.46 billion
4.909%
8.0%
26.003%
8.548%
0.155%