ExperimentSetReplicate

ExperimentSet4DNESWZMDQTB
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CTCF ChIP-seq on compound heterozygous Crispr modified TBX5 LOF with 1 bp insertion causing frameshift and 8 bp deletion in WTC-11 iPSC cells differentiated for 20 days to atrial cardiac myocytes.

   December 18th, 2024 at 10:50pm
Source Publication
Dose-dependent sensitivity of human 3D chromatin to a heart disease-linked transcription factor
Grant ZL, Kuang S, et al., bioRxiv 2025

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
in vitro differentiated cells
Sample 
WTC-11 differentiated to cardiac muscle cell
Experiment Type(s) 
ChIP-seq
Modification Type 
Crispr
Treatment Type 
None
Assay Details 
Target: CTCF protein

5 Processed Files

Quality Metrics

Experiment
For File
PCR Bottleneck Coefficient (PBC)
Nonredundant Read Fraction (NRF)
Filtered & Deduped Reads
Report
Details
Experiment
4DNEXX9KJ1M9
Bio Rep 1, Tec Rep 1
ChIP-seq against CTCF protein on WTC-11 differentiated to cardiac muscle cell
File
Read Positions (bed)
4DNFIQUMKSNX
0.88
0.88
86.79m
Experiment
4DNEXPLYU8P4
Bio Rep 2, Tec Rep 1
ChIP-seq against CTCF protein on WTC-11 differentiated to cardiac muscle cell
File
Read Positions (bed)
4DNFINYVF75C
0.86
0.86
93.63m