ExperimentSetReplicate

ExperimentSet4DNESYPKLMAM
released
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dilution Hi-C on 192627 with HindIII and bio-dCTP

   April 9th, 2017 at 5:34pm
Source Publication
A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping.
Rao SS, Huntley MH, et al., Cell 2014

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
primary cells
Sample 
192627
Experiment Type(s) 
Dilution Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: HindIII

8 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESYPKLMAM
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIQ2UKELM
214.55m
52.054%
17.056%
30.891%
Experiment
4DNEXITSTLGI
Bio Rep 1, Tec Rep 1
Dilution Hi-C on 192627 with HindIII
File
Contact List-replicate (pairs)
4DNFI8XISGKL
214.55m
52.054%
17.056%
30.891%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESYPKLMAM
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIKQEO1UU
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXITSTLGI
Bio Rep 1, Tec Rep 1
Dilution Hi-C on 192627 with HindIII
File
Alignments (bam)
4DNFITPUR1RO
274.27m
5.305%
11.678%
3.387%
1.405%
0.409%