ExperimentSetReplicate

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ExperimentSet4DNESZJM7OXF
released
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in situ Hi-C on olfactory sensory neurons sorted from SARS-Cov2 infected human olfactory epithelium - Patient102

   February 11th, 2021 at 4:40pm
Source Publication
Non-cell-autonomous disruption of nuclear architecture as a potential cause of COVID-19-induced anosmia.
Zazhytska M, Kodra A, et al., Cell 2022

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
primary cells
Sample 
olfactory receptor cell
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: MseI

8 Processed Files

    Explore Data

Loading
Experiment
File
File Type
File Size
Notes
From Multiple Experiments
4DNESZJM7OXF
Multiple Experiments
File
4DNFIE6V6RTD
contact list-combined (pairs)
8.86 GB
-
File
4DNFIRKGMZRQ
contact matrix (hic)
4.48 GB
-
File
4DNFIUXWCSL9
contact matrix (mcool)
2.98 GB
File
4DNFI29ICQ36
compartments (bw)
206.36 kB
-
File
4DNFIUGDUDFK
boundaries (bed)
138.61 kB
-
File
4DNFIXDIW4LZ
insulation score-diamond (bw)
7.87 MB
-
Experiment
4DNEXLJ8TT8V
Bio Rep 1, Tec Rep 1
in situ Hi-C on olfactory receptor cell with MseI
File
4DNFIPL46IB6
alignments (bam)
112.87 GB
-
File
4DNFI2MQT69D
contact list-replicate (pairs)
8.86 GB
-

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Details
From Multiple Experiments
4DNESZJM7OXF
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIE6V6RTD
469.55m
52.334%
22.061%
25.605%
Experiment
4DNEXLJ8TT8V
Bio Rep 1, Tec Rep 1
in situ Hi-C on olfactory receptor cell with MseI
File
Contact List-replicate (pairs)
4DNFI2MQT69D
469.55m
52.334%
22.061%
25.605%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESZJM7OXF
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIUXWCSL9
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXLJ8TT8V
Bio Rep 1, Tec Rep 1
in situ Hi-C on olfactory receptor cell with MseI
File
Alignments (bam)
4DNFIPL46IB6
798.18m
7.03%
10.237%
19.656%
4.249%
0.307%