Experiment Set

4DNES5Y9NNCL
released
View JSON

Custom Set: HUVEC dilution Hi-C

   April 9th, 2017 at 5:34pm
Source Publication
A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping.
Rao SS, Huntley MH, et al., Cell 2014

Assay Description  

Experiment Set Properties  

Set Type 
Custom
Organism 
H. sapiens
Sample Type 
primary cells
Sample 
HUVEC cell
Experiment Type(s) 
Dilution Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: HindIII

2 Processed Files

Experiment
File
File Type
File Size
Experiment
4DNEXPKYIZ7A
Dilution Hi-C on HUVEC cell with HindIII
File
4DNFI7MQRZXO
alignments (bam)
25.48 GB
File
4DNFIIO9OYD9
contact list-replicate (pairs)
2.33 GB

Quality Metrics

Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXPKYIZ7A
Dilution Hi-C on HUVEC cell with HindIII
File
Alignments (bam)
4DNFI7MQRZXO
160.71m
5.569%
10.391%
0.906%
1.478%
0.169%
Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
Experiment
4DNEXPKYIZ7A
Dilution Hi-C on HUVEC cell with HindIII
File
Contact List-replicate (pairs)
4DNFIIO9OYD9
131.22m
51.511%
28.836%
19.653%