Experiment Set

4DNESGM2KFSX
released
View JSON

Custom Set: KBM7 in situ Hi-C

   April 9th, 2017 at 5:34pm
Source Publication
A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping.
Rao SS, Huntley MH, et al., Cell 2014

Assay Description  

Experiment Set Properties  

Set Type 
Custom
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
KBM-7
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: MboI

10 Processed Files

Experiment
File
File Type
File Size
Experiment
4DNEXQAKFXNX
in situ Hi-C on KBM-7 with MboI
File
4DNFIN9XU63O
alignments (bam)
72.2 GB
File
4DNFIG4GG38V
contact list-replicate (pairs)
5.22 GB
Experiment
4DNEX3GDLGVQ
in situ Hi-C on KBM-7 with MboI
File
4DNFIJ3NI7KN
alignments (bam)
64.54 GB
File
4DNFI6GY4932
contact list-replicate (pairs)
4.54 GB
Experiment
4DNEXNZLASYA
in situ Hi-C on KBM-7 with MboI
File
4DNFINQ2IWK1
alignments (bam)
28.8 GB
File
4DNFI36TIXEX
contact list-replicate (pairs)
1.99 GB
Experiment
4DNEXIT922RC
in situ Hi-C on KBM-7 with MboI
File
4DNFIZAALR88
alignments (bam)
24.35 GB
File
4DNFI1RTJOBJ
contact list-replicate (pairs)
1.23 GB
Experiment
4DNEXS6CA395
in situ Hi-C on KBM-7 with MboI
File
4DNFIQVO3TDM
alignments (bam)
47.66 GB
File
4DNFIY6348QN
contact list-replicate (pairs)
3.8 GB

Quality Metrics

Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXQAKFXNX
in situ Hi-C on KBM-7 with MboI
File
Alignments (bam)
4DNFIN9XU63O
388.47m
9.201%
12.382%
2.993%
5.593%
0.294%
Experiment
4DNEX3GDLGVQ
in situ Hi-C on KBM-7 with MboI
File
Alignments (bam)
4DNFIJ3NI7KN
332.28m
5.592%
12.133%
4.093%
4.335%
0.295%
Experiment
4DNEXNZLASYA
in situ Hi-C on KBM-7 with MboI
File
Alignments (bam)
4DNFINQ2IWK1
136.88m
5.888%
12.537%
0.901%
5.276%
0.323%
Experiment
4DNEXIT922RC
in situ Hi-C on KBM-7 with MboI
File
Alignments (bam)
4DNFIZAALR88
95.82m
13.365%
12.313%
1.127%
5.496%
0.297%
Experiment
4DNEXS6CA395
in situ Hi-C on KBM-7 with MboI
File
Alignments (bam)
4DNFIQVO3TDM
294.49m
8.825%
12.346%
3.455%
4.172%
0.275%
Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
Experiment
4DNEXQAKFXNX
in situ Hi-C on KBM-7 with MboI
File
Contact List-replicate (pairs)
4DNFIG4GG38V
271.27m
40.955%
25.017%
34.028%
Experiment
4DNEX3GDLGVQ
in situ Hi-C on KBM-7 with MboI
File
Contact List-replicate (pairs)
4DNFI6GY4932
245.38m
37.632%
30.256%
32.112%
Experiment
4DNEXNZLASYA
in situ Hi-C on KBM-7 with MboI
File
Contact List-replicate (pairs)
4DNFI36TIXEX
103.21m
46.293%
15.167%
38.539%
Experiment
4DNEXIT922RC
in situ Hi-C on KBM-7 with MboI
File
Contact List-replicate (pairs)
4DNFI1RTJOBJ
64.87m
36.811%
29.184%
34.004%
Experiment
4DNEXS6CA395
in situ Hi-C on KBM-7 with MboI
File
Contact List-replicate (pairs)
4DNFIY6348QN
209.68m
35.858%
31.485%
32.658%