Experiment Set

4DNESNWX979D
released
View JSON

Custom Set: K562 in situ Hi-C

   April 9th, 2017 at 5:34pm
Source Publication
A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping.
Rao SS, Huntley MH, et al., Cell 2014

Assay Description  

Experiment Set Properties  

Set Type 
Custom
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
K562
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: MboI

12 Processed Files

Experiment
File
File Type
File Size
Experiment
4DNEX8IKSYIC
in situ Hi-C on K562 with MboI
File
4DNFIW21S5K4
alignments (bam)
85.38 GB
File
4DNFI9G9FRJJ
contact list-replicate (pairs)
5.91 GB
Experiment
4DNEX4QXTLZ9
in situ Hi-C on K562 with MboI
File
4DNFI3GZ6U33
alignments (bam)
7.71 GB
File
4DNFID8N3SCC
contact list-replicate (pairs)
1.12 GB
Experiment
4DNEX3CGGK34
in situ Hi-C on K562 with MboI
File
4DNFITGR57T2
alignments (bam)
14.26 GB
File
4DNFI7CIF2JL
contact list-replicate (pairs)
1.2 GB
Experiment
4DNEXC7SDGS9
in situ Hi-C on K562 with MboI
File
4DNFIKSP1NXL
alignments (bam)
7.47 GB
File
4DNFIKFV5Y88
contact list-replicate (pairs)
1.09 GB
Experiment
4DNEXH2JC926
in situ Hi-C on K562 with MboI
File
4DNFIEAJBKUI
alignments (bam)
14.18 GB
File
4DNFIRHH2E7D
contact list-replicate (pairs)
1.18 GB
Experiment
4DNEX8PBXPIN
in situ Hi-C on K562 with MboI
File
4DNFIQXVPXVJ
alignments (bam)
100.36 GB
File
4DNFI4DGNY7J
contact list-replicate (pairs)
6.92 GB

Quality Metrics

Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEX8IKSYIC
in situ Hi-C on K562 with MboI
File
Alignments (bam)
4DNFIW21S5K4
456.76m
13.571%
11.361%
3.163%
5.081%
0.279%
Experiment
4DNEX4QXTLZ9
in situ Hi-C on K562 with MboI
File
Alignments (bam)
4DNFI3GZ6U33
79.58m
5.943%
22.0%
0.353%
0.003%
0.512%
Experiment
4DNEX3CGGK34
in situ Hi-C on K562 with MboI
File
Alignments (bam)
4DNFITGR57T2
80.78m
6.596%
11.984%
0.62%
4.488%
0.689%
Experiment
4DNEXC7SDGS9
in situ Hi-C on K562 with MboI
File
Alignments (bam)
4DNFIKSP1NXL
77.35m
6.285%
21.835%
0.219%
0.002%
0.508%
Experiment
4DNEXH2JC926
in situ Hi-C on K562 with MboI
File
Alignments (bam)
4DNFIEAJBKUI
79.91m
6.366%
11.989%
0.441%
5.075%
0.692%
Experiment
4DNEX8PBXPIN
in situ Hi-C on K562 with MboI
File
Alignments (bam)
4DNFIQXVPXVJ
591.85m
8.112%
11.021%
13.97%
4.897%
0.286%
Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
Experiment
4DNEX8IKSYIC
in situ Hi-C on K562 with MboI
File
Contact List-replicate (pairs)
4DNFI9G9FRJJ
305.23m
55.971%
23.262%
20.768%
Experiment
4DNEX4QXTLZ9
in situ Hi-C on K562 with MboI
File
Contact List-replicate (pairs)
4DNFID8N3SCC
57.06m
53.774%
10.174%
36.052%
Experiment
4DNEX3CGGK34
in situ Hi-C on K562 with MboI
File
Contact List-replicate (pairs)
4DNFI7CIF2JL
61.64m
54.449%
12.254%
33.298%
Experiment
4DNEXC7SDGS9
in situ Hi-C on K562 with MboI
File
Contact List-replicate (pairs)
4DNFIKFV5Y88
55.43m
54.726%
11.186%
34.088%
Experiment
4DNEXH2JC926
in situ Hi-C on K562 with MboI
File
Contact List-replicate (pairs)
4DNFIRHH2E7D
60.83m
54.452%
11.168%
34.379%
Experiment
4DNEX8PBXPIN
in situ Hi-C on K562 with MboI
File
Contact List-replicate (pairs)
4DNFI4DGNY7J
366.95m
58.33%
25.211%
16.46%