{"lab": {"title": "Job Dekker, UMMS", "@type": ["Lab", "Item"], "status": "current", "correspondence": [{"contact_email": "am9iLmRla2tlckB1bWFzc21lZC5lZHU=", "@id": "/users/83b5073a-069b-4162-9b30-6f42d5551e34/", "display_title": "Job Dekker"}], "display_title": "Job Dekker, UMMS", "@id": "/labs/job-dekker-lab/", "uuid": "3c577664-affb-41c4-bf27-9e21c2fc1554", "pi": {"error": "no view permissions"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.3c577664-affb-41c4-bf27-9e21c2fc1554"]}}, "award": {"center_title": "External", "center": "External", "display_title": "EXTERNAL AWARD", "description": "Funding source is from outside 4DN.", "uuid": "12a92962-8265-4fc0-b2f8-cf14f05db58b", "status": "current", "name": "external-award", "@id": "/awards/external-award/", "project": "External", "@type": ["Award", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "files": [{"dbxrefs": ["SRA:SRR5939546"], "display_title": "4DNFIT9VTMWW.fastq.gz", "file_type_detailed": "reads (fastq)", "href": "/files-fastq/4DNFIT9VTMWW/@@download/4DNFIT9VTMWW.fastq.gz", "status": "released", "uuid": "4eed80b7-260c-4ebe-817d-61ef55446401", "@type": ["FileFastq", "File", "Item"], "paired_end": "1", "@id": "/files-fastq/4DNFIT9VTMWW/", "file_classification": "raw file", "accession": "4DNFIT9VTMWW", "file_size": 190245172, "upload_key": "4eed80b7-260c-4ebe-817d-61ef55446401/4DNFIT9VTMWW.fastq.gz", "file_type": "reads", "external_references": [{"ref": "SRA:SRR5939546", "uri": "https://www.ncbi.nlm.nih.gov/sra/?term=SRR5939546"}], "related_files": [{"relationship_type": "paired with", "file": {"uuid": "b5adb3b3-e00e-4686-95ef-462b38fb6e68", "@id": "/files-fastq/4DNFID6G98WR/", "file_type_detailed": "reads (fastq)", "accession": "4DNFID6G98WR", "paired_end": "2", "display_title": "4DNFID6G98WR.fastq.gz", "file_type": "reads", "status": "released", "@type": ["FileFastq", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"display_title": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "status": "released", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric": {"@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4000000, "status": "released", "uuid": "4b5ee166-9a92-4c40-90c3-23f4c6911c8e", "@id": "/quality-metrics-fastqc/4b5ee166-9a92-4c40-90c3-23f4c6911c8e/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIT9VTMWW/fastqc_report.html", "overall_quality_status": "PASS", "display_title": "QualityMetricFastqc from 2018-11-19", "Sequence length": "50", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"dbxrefs": ["SRA:SRR5939546"], "display_title": "4DNFID6G98WR.fastq.gz", "file_type_detailed": "reads (fastq)", "href": "/files-fastq/4DNFID6G98WR/@@download/4DNFID6G98WR.fastq.gz", "status": "released", "uuid": "b5adb3b3-e00e-4686-95ef-462b38fb6e68", "@type": ["FileFastq", "File", "Item"], "paired_end": "2", "@id": "/files-fastq/4DNFID6G98WR/", "file_classification": "raw file", "accession": "4DNFID6G98WR", "file_size": 184259897, "upload_key": "b5adb3b3-e00e-4686-95ef-462b38fb6e68/4DNFID6G98WR.fastq.gz", "file_type": "reads", "external_references": [{"ref": "SRA:SRR5939546", "uri": "https://www.ncbi.nlm.nih.gov/sra/?term=SRR5939546"}], "related_files": [{"relationship_type": "paired with", "file": {"uuid": "4eed80b7-260c-4ebe-817d-61ef55446401", "@id": "/files-fastq/4DNFIT9VTMWW/", "file_type_detailed": "reads (fastq)", "accession": "4DNFIT9VTMWW", "paired_end": "1", "display_title": "4DNFIT9VTMWW.fastq.gz", "file_type": "reads", "status": "released", "@type": ["FileFastq", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"display_title": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "status": "released", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric": {"@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4000000, "status": "released", "uuid": "b7bf4faf-a9db-44d5-9f50-ef2e6f69ffbc", "@id": "/quality-metrics-fastqc/b7bf4faf-a9db-44d5-9f50-ef2e6f69ffbc/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFID6G98WR/fastqc_report.html", "overall_quality_status": "PASS", "display_title": "QualityMetricFastqc from 2018-11-19", "Sequence length": "50", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"dbxrefs": ["SRA:SRR5939542"], "display_title": "4DNFIVAHE4QM.fastq.gz", "file_type_detailed": "reads (fastq)", "href": "/files-fastq/4DNFIVAHE4QM/@@download/4DNFIVAHE4QM.fastq.gz", "status": "released", "uuid": "c5a7bcee-919f-4f20-8416-a7f37b5048e3", "@type": ["FileFastq", "File", "Item"], "paired_end": "1", "@id": "/files-fastq/4DNFIVAHE4QM/", "file_classification": "raw file", "accession": "4DNFIVAHE4QM", "file_size": 191471332, "upload_key": "c5a7bcee-919f-4f20-8416-a7f37b5048e3/4DNFIVAHE4QM.fastq.gz", "file_type": "reads", "external_references": [{"ref": "SRA:SRR5939542", "uri": "https://www.ncbi.nlm.nih.gov/sra/?term=SRR5939542"}], "related_files": [{"relationship_type": "paired with", "file": {"uuid": "de4bd33c-e2d1-448b-9e16-5ea3aed01b81", "@id": "/files-fastq/4DNFISA55RQ2/", "file_type_detailed": "reads (fastq)", "accession": "4DNFISA55RQ2", "paired_end": "2", "display_title": "4DNFISA55RQ2.fastq.gz", "file_type": "reads", "status": "released", "@type": ["FileFastq", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"display_title": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "status": "released", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric": {"@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4000000, "status": "released", "uuid": "10e825b6-9863-43b6-ab35-6d8fe465c881", "@id": "/quality-metrics-fastqc/10e825b6-9863-43b6-ab35-6d8fe465c881/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIVAHE4QM/fastqc_report.html", "overall_quality_status": "PASS", "display_title": "QualityMetricFastqc from 2018-11-14", "Sequence length": "50", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"dbxrefs": ["SRA:SRR5939542"], "display_title": "4DNFISA55RQ2.fastq.gz", "file_type_detailed": "reads (fastq)", "href": "/files-fastq/4DNFISA55RQ2/@@download/4DNFISA55RQ2.fastq.gz", "status": "released", "uuid": "de4bd33c-e2d1-448b-9e16-5ea3aed01b81", "@type": ["FileFastq", "File", "Item"], "paired_end": "2", "@id": "/files-fastq/4DNFISA55RQ2/", "file_classification": "raw file", "accession": "4DNFISA55RQ2", "file_size": 186493560, "upload_key": "de4bd33c-e2d1-448b-9e16-5ea3aed01b81/4DNFISA55RQ2.fastq.gz", "file_type": "reads", "external_references": [{"ref": "SRA:SRR5939542", "uri": "https://www.ncbi.nlm.nih.gov/sra/?term=SRR5939542"}], "related_files": [{"relationship_type": "paired with", "file": {"uuid": "c5a7bcee-919f-4f20-8416-a7f37b5048e3", "@id": "/files-fastq/4DNFIVAHE4QM/", "file_type_detailed": "reads (fastq)", "accession": "4DNFIVAHE4QM", "paired_end": "1", "display_title": "4DNFIVAHE4QM.fastq.gz", "file_type": "reads", "status": "released", "@type": ["FileFastq", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"display_title": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "status": "released", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric": {"@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4000000, "status": "released", "uuid": "bf7c6a84-f227-486a-b699-a2d9f76f2162", "@id": "/quality-metrics-fastqc/bf7c6a84-f227-486a-b699-a2d9f76f2162/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFISA55RQ2/fastqc_report.html", "overall_quality_status": "PASS", "display_title": "QualityMetricFastqc from 2018-11-19", "Sequence length": "50", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"dbxrefs": ["SRA:SRR5939539"], "display_title": "4DNFI4XLU7A9.fastq.gz", "file_type_detailed": "reads (fastq)", "href": "/files-fastq/4DNFI4XLU7A9/@@download/4DNFI4XLU7A9.fastq.gz", "status": "released", "uuid": "35d2b2ea-9b77-40b3-9446-6ba5fd137e8d", "@type": ["FileFastq", "File", "Item"], "paired_end": "1", "@id": "/files-fastq/4DNFI4XLU7A9/", "file_classification": "raw file", "accession": "4DNFI4XLU7A9", "file_size": 188600673, "upload_key": "35d2b2ea-9b77-40b3-9446-6ba5fd137e8d/4DNFI4XLU7A9.fastq.gz", "file_type": "reads", "external_references": [{"ref": "SRA:SRR5939539", "uri": "https://www.ncbi.nlm.nih.gov/sra/?term=SRR5939539"}], "related_files": [{"relationship_type": "paired with", "file": {"uuid": "76cbf972-58e8-4441-9cc8-8ea0f8adc664", "@id": "/files-fastq/4DNFIW2OKOAN/", "file_type_detailed": "reads (fastq)", "accession": "4DNFIW2OKOAN", "paired_end": "2", "display_title": "4DNFIW2OKOAN.fastq.gz", "file_type": "reads", "status": "released", "@type": ["FileFastq", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"display_title": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "status": "released", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric": {"@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4000000, "status": "released", "uuid": "fae609ab-d9b7-4c73-ad7c-99b9fad22254", "@id": "/quality-metrics-fastqc/fae609ab-d9b7-4c73-ad7c-99b9fad22254/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI4XLU7A9/fastqc_report.html", "overall_quality_status": "PASS", "display_title": "QualityMetricFastqc from 2018-11-19", "Sequence length": "50", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"dbxrefs": ["SRA:SRR5939539"], "display_title": "4DNFIW2OKOAN.fastq.gz", "file_type_detailed": "reads (fastq)", "href": "/files-fastq/4DNFIW2OKOAN/@@download/4DNFIW2OKOAN.fastq.gz", "status": "released", "uuid": "76cbf972-58e8-4441-9cc8-8ea0f8adc664", "@type": ["FileFastq", "File", "Item"], "paired_end": "2", "@id": "/files-fastq/4DNFIW2OKOAN/", "file_classification": "raw file", "accession": "4DNFIW2OKOAN", "file_size": 183825172, "upload_key": "76cbf972-58e8-4441-9cc8-8ea0f8adc664/4DNFIW2OKOAN.fastq.gz", "file_type": "reads", "external_references": [{"ref": "SRA:SRR5939539", "uri": "https://www.ncbi.nlm.nih.gov/sra/?term=SRR5939539"}], "related_files": [{"relationship_type": "paired with", "file": {"uuid": "35d2b2ea-9b77-40b3-9446-6ba5fd137e8d", "@id": "/files-fastq/4DNFI4XLU7A9/", "file_type_detailed": "reads (fastq)", "accession": "4DNFI4XLU7A9", "paired_end": "1", "display_title": "4DNFI4XLU7A9.fastq.gz", "file_type": "reads", "status": "released", "@type": ["FileFastq", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"display_title": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "status": "released", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric": {"@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4000000, "status": "released", "uuid": "b02c1bbb-29e2-4777-82b8-87c0c3a54614", "@id": "/quality-metrics-fastqc/b02c1bbb-29e2-4777-82b8-87c0c3a54614/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIW2OKOAN/fastqc_report.html", "overall_quality_status": "PASS", "display_title": "QualityMetricFastqc from 2018-11-14", "Sequence length": "50", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"dbxrefs": ["SRA:SRR5939538"], "display_title": "4DNFIYPQDN7P.fastq.gz", "file_type_detailed": "reads (fastq)", "href": "/files-fastq/4DNFIYPQDN7P/@@download/4DNFIYPQDN7P.fastq.gz", "status": "released", "uuid": "0b816e14-2d22-42b9-a183-9db478c41139", "@type": ["FileFastq", "File", "Item"], "paired_end": "1", "@id": "/files-fastq/4DNFIYPQDN7P/", "file_classification": "raw file", "accession": "4DNFIYPQDN7P", "file_size": 192320039, "upload_key": "0b816e14-2d22-42b9-a183-9db478c41139/4DNFIYPQDN7P.fastq.gz", "file_type": "reads", "external_references": [{"ref": "SRA:SRR5939538", "uri": "https://www.ncbi.nlm.nih.gov/sra/?term=SRR5939538"}], "related_files": [{"relationship_type": "paired with", "file": {"uuid": "98910c48-e893-4a3b-b0a6-c74bbe3eb99b", "@id": "/files-fastq/4DNFIFVPREHJ/", "file_type_detailed": "reads (fastq)", "accession": "4DNFIFVPREHJ", "paired_end": "2", "display_title": "4DNFIFVPREHJ.fastq.gz", "file_type": "reads", "status": "released", "@type": ["FileFastq", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"display_title": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "status": "released", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric": {"@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4000000, "status": "released", "uuid": "833c8535-e338-40d6-95cf-7ed04d01c3b4", "@id": "/quality-metrics-fastqc/833c8535-e338-40d6-95cf-7ed04d01c3b4/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIYPQDN7P/fastqc_report.html", "overall_quality_status": "PASS", "display_title": "QualityMetricFastqc from 2018-11-19", "Sequence length": "50", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"dbxrefs": ["SRA:SRR5939538"], "display_title": "4DNFIFVPREHJ.fastq.gz", "file_type_detailed": "reads (fastq)", "href": "/files-fastq/4DNFIFVPREHJ/@@download/4DNFIFVPREHJ.fastq.gz", "status": "released", "uuid": "98910c48-e893-4a3b-b0a6-c74bbe3eb99b", "@type": ["FileFastq", "File", "Item"], "paired_end": "2", "@id": "/files-fastq/4DNFIFVPREHJ/", "file_classification": "raw file", "accession": "4DNFIFVPREHJ", "file_size": 187840009, "upload_key": "98910c48-e893-4a3b-b0a6-c74bbe3eb99b/4DNFIFVPREHJ.fastq.gz", "file_type": "reads", "external_references": [{"ref": "SRA:SRR5939538", "uri": "https://www.ncbi.nlm.nih.gov/sra/?term=SRR5939538"}], "related_files": [{"relationship_type": "paired with", "file": {"uuid": "0b816e14-2d22-42b9-a183-9db478c41139", "@id": "/files-fastq/4DNFIYPQDN7P/", "file_type_detailed": "reads (fastq)", "accession": "4DNFIYPQDN7P", "paired_end": "1", "display_title": "4DNFIYPQDN7P.fastq.gz", "file_type": "reads", "status": "released", "@type": ["FileFastq", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"display_title": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "status": "released", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric": {"@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4000000, "status": "released", "uuid": "a6cbedb5-67ea-4d14-9594-2bf24af7cdb1", "@id": "/quality-metrics-fastqc/a6cbedb5-67ea-4d14-9594-2bf24af7cdb1/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIFVPREHJ/fastqc_report.html", "overall_quality_status": "PASS", "display_title": "QualityMetricFastqc from 2018-11-19", "Sequence length": "50", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"dbxrefs": ["SRA:SRR5939537"], "display_title": "4DNFI2CW57UG.fastq.gz", "file_type_detailed": "reads (fastq)", "href": "/files-fastq/4DNFI2CW57UG/@@download/4DNFI2CW57UG.fastq.gz", "status": "released", "uuid": "8283c3b0-0ce3-4050-8f65-aab7f89cf5d2", "@type": ["FileFastq", "File", "Item"], "paired_end": "1", "@id": "/files-fastq/4DNFI2CW57UG/", "file_classification": "raw file", "accession": "4DNFI2CW57UG", "file_size": 195616196, "upload_key": "8283c3b0-0ce3-4050-8f65-aab7f89cf5d2/4DNFI2CW57UG.fastq.gz", "file_type": "reads", "external_references": [{"ref": "SRA:SRR5939537", "uri": "https://www.ncbi.nlm.nih.gov/sra/?term=SRR5939537"}], "related_files": [{"relationship_type": "paired with", "file": {"uuid": "16de106e-ea64-426e-a167-82a1f2744b1d", "@id": "/files-fastq/4DNFIXTZNRPE/", "file_type_detailed": "reads (fastq)", "accession": "4DNFIXTZNRPE", "paired_end": "2", "display_title": "4DNFIXTZNRPE.fastq.gz", "file_type": "reads", "status": "released", "@type": ["FileFastq", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"display_title": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "status": "released", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric": {"@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4000000, "status": "released", "uuid": "57e14c91-ee5c-43f8-a372-0f4b4700cbf4", "@id": "/quality-metrics-fastqc/57e14c91-ee5c-43f8-a372-0f4b4700cbf4/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI2CW57UG/fastqc_report.html", "overall_quality_status": "PASS", "display_title": "QualityMetricFastqc from 2018-11-19", "Sequence length": "50", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"dbxrefs": ["SRA:SRR5939537"], "display_title": "4DNFIXTZNRPE.fastq.gz", "file_type_detailed": "reads (fastq)", "href": "/files-fastq/4DNFIXTZNRPE/@@download/4DNFIXTZNRPE.fastq.gz", "status": "released", "uuid": "16de106e-ea64-426e-a167-82a1f2744b1d", "@type": ["FileFastq", "File", "Item"], "paired_end": "2", "@id": "/files-fastq/4DNFIXTZNRPE/", "file_classification": "raw file", "accession": "4DNFIXTZNRPE", "file_size": 191027516, "upload_key": "16de106e-ea64-426e-a167-82a1f2744b1d/4DNFIXTZNRPE.fastq.gz", "file_type": "reads", "external_references": [{"ref": "SRA:SRR5939537", "uri": "https://www.ncbi.nlm.nih.gov/sra/?term=SRR5939537"}], "related_files": [{"relationship_type": "paired with", "file": {"uuid": "8283c3b0-0ce3-4050-8f65-aab7f89cf5d2", "@id": "/files-fastq/4DNFI2CW57UG/", "file_type_detailed": "reads (fastq)", "accession": "4DNFI2CW57UG", "paired_end": "1", "display_title": "4DNFI2CW57UG.fastq.gz", "file_type": "reads", "status": "released", "@type": ["FileFastq", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"display_title": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "status": "released", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric": {"@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4000000, "status": "released", "uuid": "ecf93e11-7a2e-4d9a-b583-da3ddd9e245c", "@id": "/quality-metrics-fastqc/ecf93e11-7a2e-4d9a-b583-da3ddd9e245c/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIXTZNRPE/fastqc_report.html", "overall_quality_status": "PASS", "display_title": "QualityMetricFastqc from 2018-11-14", "Sequence length": "50", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"dbxrefs": ["SRA:SRR5939536"], "display_title": "4DNFIAWA7AX1.fastq.gz", "file_type_detailed": "reads (fastq)", "href": "/files-fastq/4DNFIAWA7AX1/@@download/4DNFIAWA7AX1.fastq.gz", "status": "released", "uuid": "b622385f-e0b0-43f5-86e8-c81271a1e95f", "@type": ["FileFastq", "File", "Item"], "paired_end": "1", "@id": "/files-fastq/4DNFIAWA7AX1/", "file_classification": "raw file", "accession": "4DNFIAWA7AX1", "file_size": 194048684, "upload_key": "b622385f-e0b0-43f5-86e8-c81271a1e95f/4DNFIAWA7AX1.fastq.gz", "file_type": "reads", "external_references": [{"ref": "SRA:SRR5939536", "uri": "https://www.ncbi.nlm.nih.gov/sra/?term=SRR5939536"}], "related_files": [{"relationship_type": "paired with", "file": {"uuid": "a1ff0750-9840-4c87-928a-4e8d099e4c65", "@id": "/files-fastq/4DNFIPRKLUM9/", "file_type_detailed": "reads (fastq)", "accession": "4DNFIPRKLUM9", "paired_end": "2", "display_title": "4DNFIPRKLUM9.fastq.gz", "file_type": "reads", "status": "released", "@type": ["FileFastq", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"display_title": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "status": "released", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric": {"@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4000000, "status": "released", "uuid": "4ac57c64-0801-4afc-8e03-4f2b68ec10da", "@id": "/quality-metrics-fastqc/4ac57c64-0801-4afc-8e03-4f2b68ec10da/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIAWA7AX1/fastqc_report.html", "overall_quality_status": "PASS", "display_title": "QualityMetricFastqc from 2018-11-19", "Sequence length": "50", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"dbxrefs": ["SRA:SRR5939536"], "display_title": "4DNFIPRKLUM9.fastq.gz", "file_type_detailed": "reads (fastq)", "href": "/files-fastq/4DNFIPRKLUM9/@@download/4DNFIPRKLUM9.fastq.gz", "status": "released", "uuid": "a1ff0750-9840-4c87-928a-4e8d099e4c65", "@type": ["FileFastq", "File", "Item"], "paired_end": "2", "@id": "/files-fastq/4DNFIPRKLUM9/", "file_classification": "raw file", "accession": "4DNFIPRKLUM9", "file_size": 188941854, "upload_key": "a1ff0750-9840-4c87-928a-4e8d099e4c65/4DNFIPRKLUM9.fastq.gz", "file_type": "reads", "external_references": [{"ref": "SRA:SRR5939536", "uri": "https://www.ncbi.nlm.nih.gov/sra/?term=SRR5939536"}], "related_files": [{"relationship_type": "paired with", "file": {"uuid": "b622385f-e0b0-43f5-86e8-c81271a1e95f", "@id": "/files-fastq/4DNFIAWA7AX1/", "file_type_detailed": "reads (fastq)", "accession": "4DNFIAWA7AX1", "paired_end": "1", "display_title": "4DNFIAWA7AX1.fastq.gz", "file_type": "reads", "status": "released", "@type": ["FileFastq", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"display_title": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "status": "released", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric": {"@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4000000, "status": "released", "uuid": "979ee3bb-6932-4057-a170-28d5292ab656", "@id": "/quality-metrics-fastqc/979ee3bb-6932-4057-a170-28d5292ab656/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIPRKLUM9/fastqc_report.html", "overall_quality_status": "PASS", "display_title": "QualityMetricFastqc from 2018-11-14", "Sequence length": "50", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"dbxrefs": ["SRA:SRR5939535"], "display_title": "4DNFIUAX2Q85.fastq.gz", "file_type_detailed": "reads (fastq)", "href": "/files-fastq/4DNFIUAX2Q85/@@download/4DNFIUAX2Q85.fastq.gz", "status": "released", "uuid": "ad575180-eb0b-4600-a864-0ead030af9c1", "@type": ["FileFastq", "File", "Item"], "paired_end": "1", "@id": "/files-fastq/4DNFIUAX2Q85/", "file_classification": "raw file", "accession": "4DNFIUAX2Q85", "file_size": 188735656, "upload_key": "ad575180-eb0b-4600-a864-0ead030af9c1/4DNFIUAX2Q85.fastq.gz", "file_type": "reads", "external_references": [{"ref": "SRA:SRR5939535", "uri": "https://www.ncbi.nlm.nih.gov/sra/?term=SRR5939535"}], "related_files": [{"relationship_type": "paired with", "file": {"uuid": "c9ab97b3-f3fe-48f8-8b4c-866f0e5fddcc", "@id": "/files-fastq/4DNFI5E2IUQG/", "file_type_detailed": "reads (fastq)", "accession": "4DNFI5E2IUQG", "paired_end": "2", "display_title": "4DNFI5E2IUQG.fastq.gz", "file_type": "reads", "status": "released", "@type": ["FileFastq", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"display_title": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "status": "released", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric": {"@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4000000, "status": "released", "uuid": "41671e7f-97e5-42bc-84e5-361eb57de4c5", "@id": "/quality-metrics-fastqc/41671e7f-97e5-42bc-84e5-361eb57de4c5/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIUAX2Q85/fastqc_report.html", "overall_quality_status": "PASS", "display_title": "QualityMetricFastqc from 2018-11-14", "Sequence length": "50", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"dbxrefs": ["SRA:SRR5939535"], "display_title": "4DNFI5E2IUQG.fastq.gz", "file_type_detailed": "reads (fastq)", "href": "/files-fastq/4DNFI5E2IUQG/@@download/4DNFI5E2IUQG.fastq.gz", "status": "released", "uuid": "c9ab97b3-f3fe-48f8-8b4c-866f0e5fddcc", "@type": ["FileFastq", "File", "Item"], "paired_end": "2", "@id": "/files-fastq/4DNFI5E2IUQG/", "file_classification": "raw file", "accession": "4DNFI5E2IUQG", "file_size": 183185255, "upload_key": "c9ab97b3-f3fe-48f8-8b4c-866f0e5fddcc/4DNFI5E2IUQG.fastq.gz", "file_type": "reads", "external_references": [{"ref": "SRA:SRR5939535", "uri": "https://www.ncbi.nlm.nih.gov/sra/?term=SRR5939535"}], "related_files": [{"relationship_type": "paired with", "file": {"uuid": "ad575180-eb0b-4600-a864-0ead030af9c1", "@id": "/files-fastq/4DNFIUAX2Q85/", "file_type_detailed": "reads (fastq)", "accession": "4DNFIUAX2Q85", "paired_end": "1", "display_title": "4DNFIUAX2Q85.fastq.gz", "file_type": "reads", "status": "released", "@type": ["FileFastq", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"display_title": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "status": "released", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric": {"@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4000000, "status": "released", "uuid": "f8537b6a-5d2d-4bee-9023-3ba352bb0132", "@id": "/quality-metrics-fastqc/f8537b6a-5d2d-4bee-9023-3ba352bb0132/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI5E2IUQG/fastqc_report.html", "overall_quality_status": "PASS", "display_title": "QualityMetricFastqc from 2018-11-14", "Sequence length": "50", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"dbxrefs": ["SRA:SRR5939534"], "display_title": "4DNFI28EWE5R.fastq.gz", "file_type_detailed": "reads (fastq)", "href": "/files-fastq/4DNFI28EWE5R/@@download/4DNFI28EWE5R.fastq.gz", "status": "released", "uuid": "b6a7ebb4-5f71-49c4-9efb-211384fc8023", "@type": ["FileFastq", "File", "Item"], "paired_end": "1", "@id": "/files-fastq/4DNFI28EWE5R/", "file_classification": "raw file", "accession": "4DNFI28EWE5R", "file_size": 191843467, "upload_key": "b6a7ebb4-5f71-49c4-9efb-211384fc8023/4DNFI28EWE5R.fastq.gz", "file_type": "reads", "external_references": [{"ref": "SRA:SRR5939534", "uri": "https://www.ncbi.nlm.nih.gov/sra/?term=SRR5939534"}], "related_files": [{"relationship_type": "paired with", "file": {"uuid": "e0c1577f-00f4-49ca-afdc-ecc9eb2fa305", "@id": "/files-fastq/4DNFIMWOFJWM/", "file_type_detailed": "reads (fastq)", "accession": "4DNFIMWOFJWM", "paired_end": "2", "display_title": "4DNFIMWOFJWM.fastq.gz", "file_type": "reads", "status": "released", "@type": ["FileFastq", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"display_title": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "status": "released", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric": {"@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4000000, "status": "released", "uuid": "2cdb94d6-1bcf-493b-a89c-1834e8fae019", "@id": "/quality-metrics-fastqc/2cdb94d6-1bcf-493b-a89c-1834e8fae019/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI28EWE5R/fastqc_report.html", "overall_quality_status": "PASS", "display_title": "QualityMetricFastqc from 2018-11-19", "Sequence length": "50", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"dbxrefs": ["SRA:SRR5939534"], "display_title": "4DNFIMWOFJWM.fastq.gz", "file_type_detailed": "reads (fastq)", "href": "/files-fastq/4DNFIMWOFJWM/@@download/4DNFIMWOFJWM.fastq.gz", "status": "released", "uuid": "e0c1577f-00f4-49ca-afdc-ecc9eb2fa305", "@type": ["FileFastq", "File", "Item"], "paired_end": "2", "@id": "/files-fastq/4DNFIMWOFJWM/", "file_classification": "raw file", "accession": "4DNFIMWOFJWM", "file_size": 186361623, "upload_key": "e0c1577f-00f4-49ca-afdc-ecc9eb2fa305/4DNFIMWOFJWM.fastq.gz", "file_type": "reads", "external_references": [{"ref": "SRA:SRR5939534", "uri": "https://www.ncbi.nlm.nih.gov/sra/?term=SRR5939534"}], "related_files": [{"relationship_type": "paired with", "file": {"uuid": "b6a7ebb4-5f71-49c4-9efb-211384fc8023", "@id": "/files-fastq/4DNFI28EWE5R/", "file_type_detailed": "reads (fastq)", "accession": "4DNFI28EWE5R", "paired_end": "1", "display_title": "4DNFI28EWE5R.fastq.gz", "file_type": "reads", "status": "released", "@type": ["FileFastq", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"display_title": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "status": "released", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric": {"@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4000000, "status": "released", "uuid": "f756fe29-c39a-4280-a6f2-8635d425bd98", "@id": "/quality-metrics-fastqc/f756fe29-c39a-4280-a6f2-8635d425bd98/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIMWOFJWM/fastqc_report.html", "overall_quality_status": "PASS", "display_title": "QualityMetricFastqc from 2018-11-19", "Sequence length": "50", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"dbxrefs": ["SRA:SRR5939533"], "display_title": "4DNFI4H43YZV.fastq.gz", "file_type_detailed": "reads (fastq)", "href": "/files-fastq/4DNFI4H43YZV/@@download/4DNFI4H43YZV.fastq.gz", "status": "released", "uuid": "47c74011-164e-4c96-bf5a-e7cc7b3ea107", "@type": ["FileFastq", "File", "Item"], "paired_end": "1", "@id": "/files-fastq/4DNFI4H43YZV/", "file_classification": "raw file", "accession": "4DNFI4H43YZV", "file_size": 189864255, "upload_key": "47c74011-164e-4c96-bf5a-e7cc7b3ea107/4DNFI4H43YZV.fastq.gz", "file_type": "reads", "external_references": [{"ref": "SRA:SRR5939533", "uri": "https://www.ncbi.nlm.nih.gov/sra/?term=SRR5939533"}], "related_files": [{"relationship_type": "paired with", "file": {"uuid": "bfde8f33-4b46-4877-9aa6-ed2c77c92517", "@id": "/files-fastq/4DNFIUD1C1YV/", "file_type_detailed": "reads (fastq)", "accession": "4DNFIUD1C1YV", "paired_end": "2", "display_title": "4DNFIUD1C1YV.fastq.gz", "file_type": "reads", "status": "released", "@type": ["FileFastq", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"display_title": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "status": "released", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric": {"@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4000000, "status": "released", "uuid": "18778a9a-fd1b-46ca-b2d5-5c67ded85b98", "@id": "/quality-metrics-fastqc/18778a9a-fd1b-46ca-b2d5-5c67ded85b98/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI4H43YZV/fastqc_report.html", "overall_quality_status": "PASS", "display_title": "QualityMetricFastqc from 2018-11-15", "Sequence length": "50", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"dbxrefs": ["SRA:SRR5939533"], "display_title": "4DNFIUD1C1YV.fastq.gz", "file_type_detailed": "reads (fastq)", "href": "/files-fastq/4DNFIUD1C1YV/@@download/4DNFIUD1C1YV.fastq.gz", "status": "released", "uuid": "bfde8f33-4b46-4877-9aa6-ed2c77c92517", "@type": ["FileFastq", "File", "Item"], "paired_end": "2", "@id": "/files-fastq/4DNFIUD1C1YV/", "file_classification": "raw file", "accession": "4DNFIUD1C1YV", "file_size": 184109123, "upload_key": "bfde8f33-4b46-4877-9aa6-ed2c77c92517/4DNFIUD1C1YV.fastq.gz", "file_type": "reads", "external_references": [{"ref": "SRA:SRR5939533", "uri": "https://www.ncbi.nlm.nih.gov/sra/?term=SRR5939533"}], "related_files": [{"relationship_type": "paired with", "file": {"uuid": "47c74011-164e-4c96-bf5a-e7cc7b3ea107", "@id": "/files-fastq/4DNFI4H43YZV/", "file_type_detailed": "reads (fastq)", "accession": "4DNFI4H43YZV", "paired_end": "1", "display_title": "4DNFI4H43YZV.fastq.gz", "file_type": "reads", "status": "released", "@type": ["FileFastq", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"display_title": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "status": "released", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric": {"@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4000000, "status": "released", "uuid": "ff3cb5d6-0d62-4a33-8f4d-dc2c723312a5", "@id": "/quality-metrics-fastqc/ff3cb5d6-0d62-4a33-8f4d-dc2c723312a5/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIUD1C1YV/fastqc_report.html", "overall_quality_status": "PASS", "display_title": "QualityMetricFastqc from 2018-11-19", "Sequence length": "50", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"dbxrefs": ["SRA:SRR5939532"], "display_title": "4DNFIRJG82O8.fastq.gz", "file_type_detailed": "reads (fastq)", "href": "/files-fastq/4DNFIRJG82O8/@@download/4DNFIRJG82O8.fastq.gz", "status": "released", "uuid": "e2335c0c-15d3-491b-86f0-80ab702b8624", "@type": ["FileFastq", "File", "Item"], "paired_end": "1", "@id": "/files-fastq/4DNFIRJG82O8/", "file_classification": "raw file", "accession": "4DNFIRJG82O8", "file_size": 188401596, "upload_key": "e2335c0c-15d3-491b-86f0-80ab702b8624/4DNFIRJG82O8.fastq.gz", "file_type": "reads", "external_references": [{"ref": "SRA:SRR5939532", "uri": "https://www.ncbi.nlm.nih.gov/sra/?term=SRR5939532"}], "related_files": [{"relationship_type": "paired with", "file": {"uuid": "9eb9c4d8-996f-4f2a-8901-357282f55b31", "@id": "/files-fastq/4DNFIKXR1CX8/", "file_type_detailed": "reads (fastq)", "accession": "4DNFIKXR1CX8", "paired_end": "2", "display_title": "4DNFIKXR1CX8.fastq.gz", "file_type": "reads", "status": "released", "@type": ["FileFastq", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"display_title": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "status": "released", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric": {"@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4000000, "status": "released", "uuid": "793a2bdf-51dc-4583-9931-17da7912dcba", "@id": "/quality-metrics-fastqc/793a2bdf-51dc-4583-9931-17da7912dcba/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIRJG82O8/fastqc_report.html", "overall_quality_status": "PASS", "display_title": "QualityMetricFastqc from 2018-11-14", "Sequence length": "50", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"dbxrefs": ["SRA:SRR5939532"], "display_title": "4DNFIKXR1CX8.fastq.gz", "file_type_detailed": "reads (fastq)", "href": "/files-fastq/4DNFIKXR1CX8/@@download/4DNFIKXR1CX8.fastq.gz", "status": "released", "uuid": "9eb9c4d8-996f-4f2a-8901-357282f55b31", "@type": ["FileFastq", "File", "Item"], "paired_end": "2", "@id": "/files-fastq/4DNFIKXR1CX8/", "file_classification": "raw file", "accession": "4DNFIKXR1CX8", "file_size": 182986519, "upload_key": "9eb9c4d8-996f-4f2a-8901-357282f55b31/4DNFIKXR1CX8.fastq.gz", "file_type": "reads", "external_references": [{"ref": "SRA:SRR5939532", "uri": "https://www.ncbi.nlm.nih.gov/sra/?term=SRR5939532"}], "related_files": [{"relationship_type": "paired with", "file": {"uuid": "e2335c0c-15d3-491b-86f0-80ab702b8624", "@id": "/files-fastq/4DNFIRJG82O8/", "file_type_detailed": "reads (fastq)", "accession": "4DNFIRJG82O8", "paired_end": "1", "display_title": "4DNFIRJG82O8.fastq.gz", "file_type": "reads", "status": "released", "@type": ["FileFastq", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"display_title": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "status": "released", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric": {"@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4000000, "status": "released", "uuid": "64de2eb4-1c95-43ff-9cec-df5a49bcefc1", "@id": "/quality-metrics-fastqc/64de2eb4-1c95-43ff-9cec-df5a49bcefc1/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIKXR1CX8/fastqc_report.html", "overall_quality_status": "PASS", "display_title": "QualityMetricFastqc from 2018-11-19", "Sequence length": "50", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"dbxrefs": ["SRA:SRR5939531"], "display_title": "4DNFICUDKW44.fastq.gz", "file_type_detailed": "reads (fastq)", "href": "/files-fastq/4DNFICUDKW44/@@download/4DNFICUDKW44.fastq.gz", "status": "released", "uuid": "a9ecbaa7-a345-4467-a1fd-870224dab008", "@type": ["FileFastq", "File", "Item"], "paired_end": "1", "@id": "/files-fastq/4DNFICUDKW44/", "file_classification": "raw file", "accession": "4DNFICUDKW44", "file_size": 187464343, "upload_key": "a9ecbaa7-a345-4467-a1fd-870224dab008/4DNFICUDKW44.fastq.gz", "file_type": "reads", "external_references": [{"ref": "SRA:SRR5939531", "uri": "https://www.ncbi.nlm.nih.gov/sra/?term=SRR5939531"}], "related_files": [{"relationship_type": "paired with", "file": {"uuid": "88d09c0a-97b4-4b5e-8554-fac6c8908071", "@id": "/files-fastq/4DNFIWLFYC5F/", "file_type_detailed": "reads (fastq)", "accession": "4DNFIWLFYC5F", "paired_end": "2", "display_title": "4DNFIWLFYC5F.fastq.gz", "file_type": "reads", "status": "released", "@type": ["FileFastq", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"display_title": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "status": "released", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric": {"@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4000000, "status": "released", "uuid": "f19913a8-d26c-49cd-a26c-b8a88096310a", "@id": "/quality-metrics-fastqc/f19913a8-d26c-49cd-a26c-b8a88096310a/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFICUDKW44/fastqc_report.html", "overall_quality_status": "PASS", "display_title": "QualityMetricFastqc from 2018-11-14", "Sequence length": "50", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"dbxrefs": ["SRA:SRR5939531"], "display_title": "4DNFIWLFYC5F.fastq.gz", "file_type_detailed": "reads (fastq)", "href": "/files-fastq/4DNFIWLFYC5F/@@download/4DNFIWLFYC5F.fastq.gz", "status": "released", "uuid": "88d09c0a-97b4-4b5e-8554-fac6c8908071", "@type": ["FileFastq", "File", "Item"], "paired_end": "2", "@id": "/files-fastq/4DNFIWLFYC5F/", "file_classification": "raw file", "accession": "4DNFIWLFYC5F", "file_size": 182338199, "upload_key": "88d09c0a-97b4-4b5e-8554-fac6c8908071/4DNFIWLFYC5F.fastq.gz", "file_type": "reads", "external_references": [{"ref": "SRA:SRR5939531", "uri": "https://www.ncbi.nlm.nih.gov/sra/?term=SRR5939531"}], "related_files": [{"relationship_type": "paired with", "file": {"uuid": "a9ecbaa7-a345-4467-a1fd-870224dab008", "@id": "/files-fastq/4DNFICUDKW44/", "file_type_detailed": "reads (fastq)", "accession": "4DNFICUDKW44", "paired_end": "1", "display_title": "4DNFICUDKW44.fastq.gz", "file_type": "reads", "status": "released", "@type": ["FileFastq", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"display_title": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "status": "released", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric": {"@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4000000, "status": "released", "uuid": "ee56c2ce-1eba-4234-afe8-3c4e12930f1a", "@id": "/quality-metrics-fastqc/ee56c2ce-1eba-4234-afe8-3c4e12930f1a/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIWLFYC5F/fastqc_report.html", "overall_quality_status": "PASS", "display_title": "QualityMetricFastqc from 2018-11-19", "Sequence length": "50", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"dbxrefs": ["SRA:SRR5939530"], "display_title": "4DNFIAKZ4SJ2.fastq.gz", "file_type_detailed": "reads (fastq)", "href": "/files-fastq/4DNFIAKZ4SJ2/@@download/4DNFIAKZ4SJ2.fastq.gz", "status": "released", "uuid": "db1ca698-922b-4935-8481-029713c7bc1f", "@type": ["FileFastq", "File", "Item"], "paired_end": "1", "@id": "/files-fastq/4DNFIAKZ4SJ2/", "file_classification": "raw file", "accession": "4DNFIAKZ4SJ2", "file_size": 190341545, "upload_key": "db1ca698-922b-4935-8481-029713c7bc1f/4DNFIAKZ4SJ2.fastq.gz", "file_type": "reads", "external_references": [{"ref": "SRA:SRR5939530", "uri": "https://www.ncbi.nlm.nih.gov/sra/?term=SRR5939530"}], "related_files": [{"relationship_type": "paired with", "file": {"uuid": "8554424d-be11-442d-b590-69b6eec3de03", "@id": "/files-fastq/4DNFIHGL3DHJ/", "file_type_detailed": "reads (fastq)", "accession": "4DNFIHGL3DHJ", "paired_end": "2", "display_title": "4DNFIHGL3DHJ.fastq.gz", "file_type": "reads", "status": "released", "@type": ["FileFastq", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"display_title": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "status": "released", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric": {"@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4000000, "status": "released", "uuid": "6aab45be-b67e-4c08-ad82-61cd3fde88ab", "@id": "/quality-metrics-fastqc/6aab45be-b67e-4c08-ad82-61cd3fde88ab/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIAKZ4SJ2/fastqc_report.html", "overall_quality_status": "PASS", "display_title": "QualityMetricFastqc from 2018-11-15", "Sequence length": "50", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"dbxrefs": ["SRA:SRR5939530"], "display_title": "4DNFIHGL3DHJ.fastq.gz", "file_type_detailed": "reads (fastq)", "href": "/files-fastq/4DNFIHGL3DHJ/@@download/4DNFIHGL3DHJ.fastq.gz", "status": "released", "uuid": "8554424d-be11-442d-b590-69b6eec3de03", "@type": ["FileFastq", "File", "Item"], "paired_end": "2", "@id": "/files-fastq/4DNFIHGL3DHJ/", "file_classification": "raw file", "accession": "4DNFIHGL3DHJ", "file_size": 185118770, "upload_key": "8554424d-be11-442d-b590-69b6eec3de03/4DNFIHGL3DHJ.fastq.gz", "file_type": "reads", "external_references": [{"ref": "SRA:SRR5939530", "uri": "https://www.ncbi.nlm.nih.gov/sra/?term=SRR5939530"}], "related_files": [{"relationship_type": "paired with", "file": {"uuid": "db1ca698-922b-4935-8481-029713c7bc1f", "@id": "/files-fastq/4DNFIAKZ4SJ2/", "file_type_detailed": "reads (fastq)", "accession": "4DNFIAKZ4SJ2", "paired_end": "1", "display_title": "4DNFIAKZ4SJ2.fastq.gz", "file_type": "reads", "status": "released", "@type": ["FileFastq", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"display_title": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "status": "released", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric": {"@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4000000, "status": "released", "uuid": "5ab0ee49-177f-4d89-93fe-09ee65192cff", "@id": "/quality-metrics-fastqc/5ab0ee49-177f-4d89-93fe-09ee65192cff/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIHGL3DHJ/fastqc_report.html", "overall_quality_status": "PASS", "display_title": "QualityMetricFastqc from 2018-11-19", "Sequence length": "50", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"dbxrefs": ["SRA:SRR5939529"], "display_title": "4DNFICQOJCX8.fastq.gz", "file_type_detailed": "reads (fastq)", "href": "/files-fastq/4DNFICQOJCX8/@@download/4DNFICQOJCX8.fastq.gz", "status": "released", "uuid": "82bf56d2-2df0-4972-8c28-b75ac1d1176d", "@type": ["FileFastq", "File", "Item"], "paired_end": "1", "@id": "/files-fastq/4DNFICQOJCX8/", "file_classification": "raw file", "accession": "4DNFICQOJCX8", "file_size": 196363276, "upload_key": "82bf56d2-2df0-4972-8c28-b75ac1d1176d/4DNFICQOJCX8.fastq.gz", "file_type": "reads", "external_references": [{"ref": "SRA:SRR5939529", "uri": "https://www.ncbi.nlm.nih.gov/sra/?term=SRR5939529"}], "related_files": [{"relationship_type": "paired with", "file": {"uuid": "78f1d6a5-5b5f-4931-a47f-7f88f642f409", "@id": "/files-fastq/4DNFIWAKX6EA/", "file_type_detailed": "reads (fastq)", "accession": "4DNFIWAKX6EA", "paired_end": "2", "display_title": "4DNFIWAKX6EA.fastq.gz", "file_type": "reads", "status": "released", "@type": ["FileFastq", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"display_title": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "status": "released", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric": {"@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4000000, "status": "released", "uuid": "0bd266d5-9072-4db0-b21a-e7c844723858", "@id": "/quality-metrics-fastqc/0bd266d5-9072-4db0-b21a-e7c844723858/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFICQOJCX8/fastqc_report.html", "overall_quality_status": "PASS", "display_title": "QualityMetricFastqc from 2018-11-19", "Sequence length": "50", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"dbxrefs": ["SRA:SRR5939529"], "display_title": "4DNFIWAKX6EA.fastq.gz", "file_type_detailed": "reads (fastq)", "href": "/files-fastq/4DNFIWAKX6EA/@@download/4DNFIWAKX6EA.fastq.gz", "status": "released", "uuid": "78f1d6a5-5b5f-4931-a47f-7f88f642f409", "@type": ["FileFastq", "File", "Item"], "paired_end": "2", "@id": "/files-fastq/4DNFIWAKX6EA/", "file_classification": "raw file", "accession": "4DNFIWAKX6EA", "file_size": 191016929, "upload_key": "78f1d6a5-5b5f-4931-a47f-7f88f642f409/4DNFIWAKX6EA.fastq.gz", "file_type": "reads", "external_references": [{"ref": "SRA:SRR5939529", "uri": "https://www.ncbi.nlm.nih.gov/sra/?term=SRR5939529"}], "related_files": [{"relationship_type": "paired with", "file": {"uuid": "82bf56d2-2df0-4972-8c28-b75ac1d1176d", "@id": "/files-fastq/4DNFICQOJCX8/", "file_type_detailed": "reads (fastq)", "accession": "4DNFICQOJCX8", "paired_end": "1", "display_title": "4DNFICQOJCX8.fastq.gz", "file_type": "reads", "status": "released", "@type": ["FileFastq", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"display_title": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "status": "released", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric": {"@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4000000, "status": "released", "uuid": "cccff722-4e05-4266-8851-95ffba79037c", "@id": "/quality-metrics-fastqc/cccff722-4e05-4266-8851-95ffba79037c/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIWAKX6EA/fastqc_report.html", "overall_quality_status": "PASS", "display_title": "QualityMetricFastqc from 2018-11-19", "Sequence length": "50", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"dbxrefs": ["SRA:SRR5939528"], "display_title": "4DNFIAXZISHA.fastq.gz", "file_type_detailed": "reads (fastq)", "href": "/files-fastq/4DNFIAXZISHA/@@download/4DNFIAXZISHA.fastq.gz", "status": "released", "uuid": "0cc4aa61-6207-4ab0-bead-d771fe0a5c7a", "@type": ["FileFastq", "File", "Item"], "paired_end": "1", "@id": "/files-fastq/4DNFIAXZISHA/", "file_classification": "raw file", "accession": "4DNFIAXZISHA", "file_size": 195250141, "upload_key": "0cc4aa61-6207-4ab0-bead-d771fe0a5c7a/4DNFIAXZISHA.fastq.gz", "file_type": "reads", "external_references": [{"ref": "SRA:SRR5939528", "uri": "https://www.ncbi.nlm.nih.gov/sra/?term=SRR5939528"}], "related_files": [{"relationship_type": "paired with", "file": {"uuid": "785736b9-4ef1-486b-b2b6-8b4a72cdce0a", "@id": "/files-fastq/4DNFIJ7LD5CW/", "file_type_detailed": "reads (fastq)", "accession": "4DNFIJ7LD5CW", "paired_end": "2", "display_title": "4DNFIJ7LD5CW.fastq.gz", "file_type": "reads", "status": "released", "@type": ["FileFastq", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"display_title": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "status": "released", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric": {"@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4000000, "status": "released", "uuid": "c1985073-ca2d-4f0e-af9e-7cab43f1edc5", "@id": "/quality-metrics-fastqc/c1985073-ca2d-4f0e-af9e-7cab43f1edc5/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIAXZISHA/fastqc_report.html", "overall_quality_status": "PASS", "display_title": "QualityMetricFastqc from 2018-11-19", "Sequence length": "50", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"dbxrefs": ["SRA:SRR5939528"], "display_title": "4DNFIJ7LD5CW.fastq.gz", "file_type_detailed": "reads (fastq)", "href": "/files-fastq/4DNFIJ7LD5CW/@@download/4DNFIJ7LD5CW.fastq.gz", "status": "released", "uuid": "785736b9-4ef1-486b-b2b6-8b4a72cdce0a", "@type": ["FileFastq", "File", "Item"], "paired_end": "2", "@id": "/files-fastq/4DNFIJ7LD5CW/", "file_classification": "raw file", "accession": "4DNFIJ7LD5CW", "file_size": 189428018, "upload_key": "785736b9-4ef1-486b-b2b6-8b4a72cdce0a/4DNFIJ7LD5CW.fastq.gz", "file_type": "reads", "external_references": [{"ref": "SRA:SRR5939528", "uri": "https://www.ncbi.nlm.nih.gov/sra/?term=SRR5939528"}], "related_files": [{"relationship_type": "paired with", "file": {"uuid": "0cc4aa61-6207-4ab0-bead-d771fe0a5c7a", "@id": "/files-fastq/4DNFIAXZISHA/", "file_type_detailed": "reads (fastq)", "accession": "4DNFIAXZISHA", "paired_end": "1", "display_title": "4DNFIAXZISHA.fastq.gz", "file_type": "reads", "status": "released", "@type": ["FileFastq", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"display_title": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "status": "released", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric": {"@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4000000, "status": "released", "uuid": "c2719ba4-9a75-4ecb-95e8-485dacc3d733", "@id": "/quality-metrics-fastqc/c2719ba4-9a75-4ecb-95e8-485dacc3d733/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIJ7LD5CW/fastqc_report.html", "overall_quality_status": "PASS", "display_title": "QualityMetricFastqc from 2018-11-14", "Sequence length": "50", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"dbxrefs": ["SRA:SRR5939527"], "display_title": "4DNFIPUFNU6U.fastq.gz", "file_type_detailed": "reads (fastq)", "href": "/files-fastq/4DNFIPUFNU6U/@@download/4DNFIPUFNU6U.fastq.gz", "status": "released", "uuid": "d0cef3bb-77a7-4be7-8352-c3d9db3c25e4", "@type": ["FileFastq", "File", "Item"], "paired_end": "1", "@id": "/files-fastq/4DNFIPUFNU6U/", "file_classification": "raw file", "accession": "4DNFIPUFNU6U", "file_size": 193621034, "upload_key": "d0cef3bb-77a7-4be7-8352-c3d9db3c25e4/4DNFIPUFNU6U.fastq.gz", "file_type": "reads", "external_references": [{"ref": "SRA:SRR5939527", "uri": "https://www.ncbi.nlm.nih.gov/sra/?term=SRR5939527"}], "related_files": [{"relationship_type": "paired with", "file": {"uuid": "eebbf9b7-0a70-4397-94b0-a216e14e0a82", "@id": "/files-fastq/4DNFIES3S2LQ/", "file_type_detailed": "reads (fastq)", "accession": "4DNFIES3S2LQ", "paired_end": "2", "display_title": "4DNFIES3S2LQ.fastq.gz", "file_type": "reads", "status": "released", "@type": ["FileFastq", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"display_title": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "status": "released", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric": {"@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4000000, "status": "released", "uuid": "5e01eafe-0a0c-4c9b-8e4c-79a7caf99295", "@id": "/quality-metrics-fastqc/5e01eafe-0a0c-4c9b-8e4c-79a7caf99295/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIPUFNU6U/fastqc_report.html", "overall_quality_status": "PASS", "display_title": "QualityMetricFastqc from 2018-11-14", "Sequence length": "50", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"dbxrefs": ["SRA:SRR5939527"], "display_title": "4DNFIES3S2LQ.fastq.gz", "file_type_detailed": "reads (fastq)", "href": "/files-fastq/4DNFIES3S2LQ/@@download/4DNFIES3S2LQ.fastq.gz", "status": "released", "uuid": "eebbf9b7-0a70-4397-94b0-a216e14e0a82", "@type": ["FileFastq", "File", "Item"], "paired_end": "2", "@id": "/files-fastq/4DNFIES3S2LQ/", "file_classification": "raw file", "accession": "4DNFIES3S2LQ", "file_size": 187146334, "upload_key": "eebbf9b7-0a70-4397-94b0-a216e14e0a82/4DNFIES3S2LQ.fastq.gz", "file_type": "reads", "external_references": [{"ref": "SRA:SRR5939527", "uri": "https://www.ncbi.nlm.nih.gov/sra/?term=SRR5939527"}], "related_files": [{"relationship_type": "paired with", "file": {"uuid": "d0cef3bb-77a7-4be7-8352-c3d9db3c25e4", "@id": "/files-fastq/4DNFIPUFNU6U/", "file_type_detailed": "reads (fastq)", "accession": "4DNFIPUFNU6U", "paired_end": "1", "display_title": "4DNFIPUFNU6U.fastq.gz", "file_type": "reads", "status": "released", "@type": ["FileFastq", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"display_title": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "status": "released", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric": {"@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4000000, "status": "released", "uuid": "ef9c6386-ba4d-4a23-b2da-8c9002eedf93", "@id": "/quality-metrics-fastqc/ef9c6386-ba4d-4a23-b2da-8c9002eedf93/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIES3S2LQ/fastqc_report.html", "overall_quality_status": "PASS", "display_title": "QualityMetricFastqc from 2018-11-15", "Sequence length": "50", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"dbxrefs": ["SRA:SRR5939526"], "display_title": "4DNFII7DD4MB.fastq.gz", "file_type_detailed": "reads (fastq)", "href": "/files-fastq/4DNFII7DD4MB/@@download/4DNFII7DD4MB.fastq.gz", "status": "released", "uuid": "2ebecd49-7285-4e1a-b7ef-1052f9d770b3", "@type": ["FileFastq", "File", "Item"], "paired_end": "1", "@id": "/files-fastq/4DNFII7DD4MB/", "file_classification": "raw file", "accession": "4DNFII7DD4MB", "file_size": 190591733, "upload_key": "2ebecd49-7285-4e1a-b7ef-1052f9d770b3/4DNFII7DD4MB.fastq.gz", "file_type": "reads", "external_references": [{"ref": "SRA:SRR5939526", "uri": "https://www.ncbi.nlm.nih.gov/sra/?term=SRR5939526"}], "related_files": [{"relationship_type": "paired with", "file": {"uuid": "eff4f72e-751c-422e-bd4b-b7b221d38705", "@id": "/files-fastq/4DNFI4WK47YB/", "file_type_detailed": "reads (fastq)", "accession": "4DNFI4WK47YB", "paired_end": "2", "display_title": "4DNFI4WK47YB.fastq.gz", "file_type": "reads", "status": "released", "@type": ["FileFastq", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"display_title": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "status": "released", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric": {"@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4000000, "status": "released", "uuid": "0636cf34-a05c-4495-b73c-0b641586dc2f", "@id": "/quality-metrics-fastqc/0636cf34-a05c-4495-b73c-0b641586dc2f/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFII7DD4MB/fastqc_report.html", "overall_quality_status": "PASS", "display_title": "QualityMetricFastqc from 2018-11-19", "Sequence length": "50", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"dbxrefs": ["SRA:SRR5939526"], "display_title": "4DNFI4WK47YB.fastq.gz", "file_type_detailed": "reads (fastq)", "href": "/files-fastq/4DNFI4WK47YB/@@download/4DNFI4WK47YB.fastq.gz", "status": "released", "uuid": "eff4f72e-751c-422e-bd4b-b7b221d38705", "@type": ["FileFastq", "File", "Item"], "paired_end": "2", "@id": "/files-fastq/4DNFI4WK47YB/", "file_classification": "raw file", "accession": "4DNFI4WK47YB", "file_size": 184313606, "upload_key": "eff4f72e-751c-422e-bd4b-b7b221d38705/4DNFI4WK47YB.fastq.gz", "file_type": "reads", "external_references": [{"ref": "SRA:SRR5939526", "uri": "https://www.ncbi.nlm.nih.gov/sra/?term=SRR5939526"}], "related_files": [{"relationship_type": "paired with", "file": {"uuid": "2ebecd49-7285-4e1a-b7ef-1052f9d770b3", "@id": "/files-fastq/4DNFII7DD4MB/", "file_type_detailed": "reads (fastq)", "accession": "4DNFII7DD4MB", "paired_end": "1", "display_title": "4DNFII7DD4MB.fastq.gz", "file_type": "reads", "status": "released", "@type": ["FileFastq", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"display_title": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "status": "released", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric": {"@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4000000, "status": "released", "uuid": "6f781314-7264-4b6c-a3e7-6f6f34c94c14", "@id": "/quality-metrics-fastqc/6f781314-7264-4b6c-a3e7-6f6f34c94c14/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI4WK47YB/fastqc_report.html", "overall_quality_status": "PASS", "display_title": "QualityMetricFastqc from 2018-11-15", "Sequence length": "50", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"dbxrefs": ["SRA:SRR5939525"], "display_title": "4DNFIMPM2DX1.fastq.gz", "file_type_detailed": "reads (fastq)", "href": "/files-fastq/4DNFIMPM2DX1/@@download/4DNFIMPM2DX1.fastq.gz", "status": "released", "uuid": "09347a35-5ff0-4a27-bdbc-e0ac895f6e79", "@type": ["FileFastq", "File", "Item"], "paired_end": "1", "@id": "/files-fastq/4DNFIMPM2DX1/", "file_classification": "raw file", "accession": "4DNFIMPM2DX1", "file_size": 188971614, "upload_key": "09347a35-5ff0-4a27-bdbc-e0ac895f6e79/4DNFIMPM2DX1.fastq.gz", "file_type": "reads", "external_references": [{"ref": "SRA:SRR5939525", "uri": "https://www.ncbi.nlm.nih.gov/sra/?term=SRR5939525"}], "related_files": [{"relationship_type": "paired with", "file": {"uuid": "51f6e681-608f-4c37-b9e1-657285da852b", "@id": "/files-fastq/4DNFI9VFRL1L/", "file_type_detailed": "reads (fastq)", "accession": "4DNFI9VFRL1L", "paired_end": "2", "display_title": "4DNFI9VFRL1L.fastq.gz", "file_type": "reads", "status": "released", "@type": ["FileFastq", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"display_title": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "status": "released", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric": {"@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4000000, "status": "released", "uuid": "f5e55840-b398-4beb-8288-335313f5eb68", "@id": "/quality-metrics-fastqc/f5e55840-b398-4beb-8288-335313f5eb68/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIMPM2DX1/fastqc_report.html", "overall_quality_status": "PASS", "display_title": "QualityMetricFastqc from 2018-11-15", "Sequence length": "50", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"dbxrefs": ["SRA:SRR5939525"], "display_title": "4DNFI9VFRL1L.fastq.gz", "file_type_detailed": "reads (fastq)", "href": "/files-fastq/4DNFI9VFRL1L/@@download/4DNFI9VFRL1L.fastq.gz", "status": "released", "uuid": "51f6e681-608f-4c37-b9e1-657285da852b", "@type": ["FileFastq", "File", "Item"], "paired_end": "2", "@id": "/files-fastq/4DNFI9VFRL1L/", "file_classification": "raw file", "accession": "4DNFI9VFRL1L", "file_size": 183213611, "upload_key": "51f6e681-608f-4c37-b9e1-657285da852b/4DNFI9VFRL1L.fastq.gz", "file_type": "reads", "external_references": [{"ref": "SRA:SRR5939525", "uri": "https://www.ncbi.nlm.nih.gov/sra/?term=SRR5939525"}], "related_files": [{"relationship_type": "paired with", "file": {"uuid": "09347a35-5ff0-4a27-bdbc-e0ac895f6e79", "@id": "/files-fastq/4DNFIMPM2DX1/", "file_type_detailed": "reads (fastq)", "accession": "4DNFIMPM2DX1", "paired_end": "1", "display_title": "4DNFIMPM2DX1.fastq.gz", "file_type": "reads", "status": "released", "@type": ["FileFastq", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"display_title": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "status": "released", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric": {"@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4000000, "status": "released", "uuid": "9378bbb7-0e09-4730-a1b0-8cb0ab40a9ba", "@id": "/quality-metrics-fastqc/9378bbb7-0e09-4730-a1b0-8cb0ab40a9ba/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI9VFRL1L/fastqc_report.html", "overall_quality_status": "PASS", "display_title": "QualityMetricFastqc from 2018-11-19", "Sequence length": "50", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"dbxrefs": ["SRA:SRR5939524"], "display_title": "4DNFI77N6AKN.fastq.gz", "file_type_detailed": "reads (fastq)", "href": "/files-fastq/4DNFI77N6AKN/@@download/4DNFI77N6AKN.fastq.gz", "status": "released", "uuid": "0d0d97df-6561-4df5-a890-3c50778a292c", "@type": ["FileFastq", "File", "Item"], "paired_end": "1", "@id": "/files-fastq/4DNFI77N6AKN/", "file_classification": "raw file", "accession": "4DNFI77N6AKN", "file_size": 187570913, "upload_key": "0d0d97df-6561-4df5-a890-3c50778a292c/4DNFI77N6AKN.fastq.gz", "file_type": "reads", "external_references": [{"ref": "SRA:SRR5939524", "uri": "https://www.ncbi.nlm.nih.gov/sra/?term=SRR5939524"}], "related_files": [{"relationship_type": "paired with", "file": {"uuid": "10d4adcf-4d43-4455-9950-78def41cee85", "@id": "/files-fastq/4DNFIMUQIVSA/", "file_type_detailed": "reads (fastq)", "accession": "4DNFIMUQIVSA", "paired_end": "2", "display_title": "4DNFIMUQIVSA.fastq.gz", "file_type": "reads", "status": "released", "@type": ["FileFastq", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"display_title": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "status": "released", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric": {"@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4000000, "status": "released", "uuid": "5dc60214-e783-4f0e-8791-f247783de790", "@id": "/quality-metrics-fastqc/5dc60214-e783-4f0e-8791-f247783de790/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI77N6AKN/fastqc_report.html", "overall_quality_status": "PASS", "display_title": "QualityMetricFastqc from 2018-11-15", "Sequence length": "50", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"dbxrefs": ["SRA:SRR5939524"], "display_title": "4DNFIMUQIVSA.fastq.gz", "file_type_detailed": "reads (fastq)", "href": "/files-fastq/4DNFIMUQIVSA/@@download/4DNFIMUQIVSA.fastq.gz", "status": "released", "uuid": "10d4adcf-4d43-4455-9950-78def41cee85", "@type": ["FileFastq", "File", "Item"], "paired_end": "2", "@id": "/files-fastq/4DNFIMUQIVSA/", "file_classification": "raw file", "accession": "4DNFIMUQIVSA", "file_size": 181619336, "upload_key": "10d4adcf-4d43-4455-9950-78def41cee85/4DNFIMUQIVSA.fastq.gz", "file_type": "reads", "external_references": [{"ref": "SRA:SRR5939524", "uri": "https://www.ncbi.nlm.nih.gov/sra/?term=SRR5939524"}], "related_files": [{"relationship_type": "paired with", "file": {"uuid": "0d0d97df-6561-4df5-a890-3c50778a292c", "@id": "/files-fastq/4DNFI77N6AKN/", "file_type_detailed": "reads (fastq)", "accession": "4DNFI77N6AKN", "paired_end": "1", "display_title": "4DNFI77N6AKN.fastq.gz", "file_type": "reads", "status": "released", "@type": ["FileFastq", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"display_title": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "status": "released", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric": {"@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4000000, "status": "released", "uuid": "4e486360-29fc-4d76-9bb7-c466f0172629", "@id": "/quality-metrics-fastqc/4e486360-29fc-4d76-9bb7-c466f0172629/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIMUQIVSA/fastqc_report.html", "overall_quality_status": "PASS", "display_title": "QualityMetricFastqc from 2018-11-14", "Sequence length": "50", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"dbxrefs": ["SRA:SRR5939548"], "display_title": "4DNFIT9SL7DK.fastq.gz", "file_type_detailed": "reads (fastq)", "href": "/files-fastq/4DNFIT9SL7DK/@@download/4DNFIT9SL7DK.fastq.gz", "status": "released", "uuid": "4cc0a318-25f5-4ee9-8473-02f402e59482", "@type": ["FileFastq", "File", "Item"], "paired_end": "1", "@id": "/files-fastq/4DNFIT9SL7DK/", "file_classification": "raw file", "accession": "4DNFIT9SL7DK", "file_size": 187489642, "upload_key": "4cc0a318-25f5-4ee9-8473-02f402e59482/4DNFIT9SL7DK.fastq.gz", "file_type": "reads", "external_references": [{"ref": "SRA:SRR5939548", "uri": "https://www.ncbi.nlm.nih.gov/sra/?term=SRR5939548"}], "related_files": [{"relationship_type": "paired with", "file": {"uuid": "50a5d49a-0265-430c-ba5c-aa18aaaf6b9a", "@id": "/files-fastq/4DNFIF3VNKM1/", "file_type_detailed": "reads (fastq)", "accession": "4DNFIF3VNKM1", "paired_end": "2", "display_title": "4DNFIF3VNKM1.fastq.gz", "file_type": "reads", "status": "released", "@type": ["FileFastq", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"display_title": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "status": "released", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric": {"@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4000000, "status": "released", "uuid": "88117b98-ba23-4fc7-b719-409f5315d1e5", "@id": "/quality-metrics-fastqc/88117b98-ba23-4fc7-b719-409f5315d1e5/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIT9SL7DK/fastqc_report.html", "overall_quality_status": "PASS", "display_title": "QualityMetricFastqc from 2018-11-15", "Sequence length": "50", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"dbxrefs": ["SRA:SRR5939548"], "display_title": "4DNFIF3VNKM1.fastq.gz", "file_type_detailed": "reads (fastq)", "href": "/files-fastq/4DNFIF3VNKM1/@@download/4DNFIF3VNKM1.fastq.gz", "status": "released", "uuid": "50a5d49a-0265-430c-ba5c-aa18aaaf6b9a", "@type": ["FileFastq", "File", "Item"], "paired_end": "2", "@id": "/files-fastq/4DNFIF3VNKM1/", "file_classification": "raw file", "accession": "4DNFIF3VNKM1", "file_size": 182226259, "upload_key": "50a5d49a-0265-430c-ba5c-aa18aaaf6b9a/4DNFIF3VNKM1.fastq.gz", "file_type": "reads", "external_references": [{"ref": "SRA:SRR5939548", "uri": "https://www.ncbi.nlm.nih.gov/sra/?term=SRR5939548"}], "related_files": [{"relationship_type": "paired with", "file": {"uuid": "4cc0a318-25f5-4ee9-8473-02f402e59482", "@id": "/files-fastq/4DNFIT9SL7DK/", "file_type_detailed": "reads (fastq)", "accession": "4DNFIT9SL7DK", "paired_end": "1", "display_title": "4DNFIT9SL7DK.fastq.gz", "file_type": "reads", "status": "released", "@type": ["FileFastq", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"display_title": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "status": "released", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric": {"@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4000000, "status": "released", "uuid": "7b1375c9-1d6d-4e09-a300-1702924d1415", "@id": "/quality-metrics-fastqc/7b1375c9-1d6d-4e09-a300-1702924d1415/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIF3VNKM1/fastqc_report.html", "overall_quality_status": "PASS", "display_title": "QualityMetricFastqc from 2018-11-19", "Sequence length": "50", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"dbxrefs": ["SRA:SRR5939547"], "display_title": "4DNFIVX2R5OP.fastq.gz", "file_type_detailed": "reads (fastq)", "href": "/files-fastq/4DNFIVX2R5OP/@@download/4DNFIVX2R5OP.fastq.gz", "status": "released", "uuid": "9723b03f-e970-4fb8-9145-3ef0cc50b6d5", "@type": ["FileFastq", "File", "Item"], "paired_end": "1", "@id": "/files-fastq/4DNFIVX2R5OP/", "file_classification": "raw file", "accession": "4DNFIVX2R5OP", "file_size": 190214911, "upload_key": "9723b03f-e970-4fb8-9145-3ef0cc50b6d5/4DNFIVX2R5OP.fastq.gz", "file_type": "reads", "external_references": [{"ref": "SRA:SRR5939547", "uri": "https://www.ncbi.nlm.nih.gov/sra/?term=SRR5939547"}], "related_files": [{"relationship_type": "paired with", "file": {"uuid": "081cb69e-eb49-41e6-ad5e-ff3f54fe2f18", "@id": "/files-fastq/4DNFI12NEOZB/", "file_type_detailed": "reads (fastq)", "accession": "4DNFI12NEOZB", "paired_end": "2", "display_title": "4DNFI12NEOZB.fastq.gz", "file_type": "reads", "status": "released", "@type": ["FileFastq", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"display_title": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "status": "released", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric": {"@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4000000, "status": "released", "uuid": "5bc36999-f147-48a1-96cd-38053bf51751", "@id": "/quality-metrics-fastqc/5bc36999-f147-48a1-96cd-38053bf51751/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIVX2R5OP/fastqc_report.html", "overall_quality_status": "PASS", "display_title": "QualityMetricFastqc from 2018-11-15", "Sequence length": "50", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"dbxrefs": ["SRA:SRR5939547"], "display_title": "4DNFI12NEOZB.fastq.gz", "file_type_detailed": "reads (fastq)", "href": "/files-fastq/4DNFI12NEOZB/@@download/4DNFI12NEOZB.fastq.gz", "status": "released", "uuid": "081cb69e-eb49-41e6-ad5e-ff3f54fe2f18", "@type": ["FileFastq", "File", "Item"], "paired_end": "2", "@id": "/files-fastq/4DNFI12NEOZB/", "file_classification": "raw file", "accession": "4DNFI12NEOZB", "file_size": 185099167, "upload_key": "081cb69e-eb49-41e6-ad5e-ff3f54fe2f18/4DNFI12NEOZB.fastq.gz", "file_type": "reads", "external_references": [{"ref": "SRA:SRR5939547", "uri": "https://www.ncbi.nlm.nih.gov/sra/?term=SRR5939547"}], "related_files": [{"relationship_type": "paired with", "file": {"uuid": "9723b03f-e970-4fb8-9145-3ef0cc50b6d5", "@id": "/files-fastq/4DNFIVX2R5OP/", "file_type_detailed": "reads (fastq)", "accession": "4DNFIVX2R5OP", "paired_end": "1", "display_title": "4DNFIVX2R5OP.fastq.gz", "file_type": "reads", "status": "released", "@type": ["FileFastq", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"display_title": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "status": "released", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric": {"@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4000000, "status": "released", "uuid": "cca6b3ff-d776-4a21-9faa-600f37b07d5a", "@id": "/quality-metrics-fastqc/cca6b3ff-d776-4a21-9faa-600f37b07d5a/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI12NEOZB/fastqc_report.html", "overall_quality_status": "PASS", "display_title": "QualityMetricFastqc from 2018-11-15", "Sequence length": "50", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"dbxrefs": ["SRA:SRR5939549"], "display_title": "4DNFIORUIXRH.fastq.gz", "file_type_detailed": "reads (fastq)", "href": "/files-fastq/4DNFIORUIXRH/@@download/4DNFIORUIXRH.fastq.gz", "status": "released", "uuid": "ea78f808-e2b4-46b8-8efc-cb50a3660188", "@type": ["FileFastq", "File", "Item"], "paired_end": "1", "@id": "/files-fastq/4DNFIORUIXRH/", "file_classification": "raw file", "accession": "4DNFIORUIXRH", "file_size": 188994612, "upload_key": "ea78f808-e2b4-46b8-8efc-cb50a3660188/4DNFIORUIXRH.fastq.gz", "file_type": "reads", "external_references": [{"ref": "SRA:SRR5939549", "uri": "https://www.ncbi.nlm.nih.gov/sra/?term=SRR5939549"}], "related_files": [{"relationship_type": "paired with", "file": {"uuid": "cd36eb7a-2033-4bd3-b58d-ff2ddef037c6", "@id": "/files-fastq/4DNFI9DLE9GX/", "file_type_detailed": "reads (fastq)", "accession": "4DNFI9DLE9GX", "paired_end": "2", "display_title": "4DNFI9DLE9GX.fastq.gz", "file_type": "reads", "status": "released", "@type": ["FileFastq", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"display_title": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "status": "released", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric": {"@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4000000, "status": "released", "uuid": "7505736b-a1ef-47d0-96f5-32091554dd3e", "@id": "/quality-metrics-fastqc/7505736b-a1ef-47d0-96f5-32091554dd3e/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIORUIXRH/fastqc_report.html", "overall_quality_status": "PASS", "display_title": "QualityMetricFastqc from 2018-11-19", "Sequence length": "50", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"dbxrefs": ["SRA:SRR5939549"], "display_title": "4DNFI9DLE9GX.fastq.gz", "file_type_detailed": "reads (fastq)", "href": "/files-fastq/4DNFI9DLE9GX/@@download/4DNFI9DLE9GX.fastq.gz", "status": "released", "uuid": "cd36eb7a-2033-4bd3-b58d-ff2ddef037c6", "@type": ["FileFastq", "File", "Item"], "paired_end": "2", "@id": "/files-fastq/4DNFI9DLE9GX/", "file_classification": "raw file", "accession": "4DNFI9DLE9GX", "file_size": 184084370, "upload_key": "cd36eb7a-2033-4bd3-b58d-ff2ddef037c6/4DNFI9DLE9GX.fastq.gz", "file_type": "reads", "external_references": [{"ref": "SRA:SRR5939549", "uri": "https://www.ncbi.nlm.nih.gov/sra/?term=SRR5939549"}], "related_files": [{"relationship_type": "paired with", "file": {"uuid": "ea78f808-e2b4-46b8-8efc-cb50a3660188", "@id": "/files-fastq/4DNFIORUIXRH/", "file_type_detailed": "reads (fastq)", "accession": "4DNFIORUIXRH", "paired_end": "1", "display_title": "4DNFIORUIXRH.fastq.gz", "file_type": "reads", "status": "released", "@type": ["FileFastq", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"display_title": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "status": "released", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric": {"@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4000000, "status": "released", "uuid": "4c1c287c-5e3c-439c-8d48-ff5e8d1c54fd", "@id": "/quality-metrics-fastqc/4c1c287c-5e3c-439c-8d48-ff5e8d1c54fd/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI9DLE9GX/fastqc_report.html", "overall_quality_status": "PASS", "display_title": "QualityMetricFastqc from 2018-11-19", "Sequence length": "50", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"dbxrefs": ["SRA:SRR5939545"], "display_title": "4DNFI5YX88CW.fastq.gz", "file_type_detailed": "reads (fastq)", "href": "/files-fastq/4DNFI5YX88CW/@@download/4DNFI5YX88CW.fastq.gz", "status": "released", "uuid": "fd12c03d-cedc-4a78-9cfb-952f6a3b733a", "@type": ["FileFastq", "File", "Item"], "paired_end": "1", "@id": "/files-fastq/4DNFI5YX88CW/", "file_classification": "raw file", "accession": "4DNFI5YX88CW", "file_size": 198017260, "upload_key": "fd12c03d-cedc-4a78-9cfb-952f6a3b733a/4DNFI5YX88CW.fastq.gz", "file_type": "reads", "external_references": [{"ref": "SRA:SRR5939545", "uri": "https://www.ncbi.nlm.nih.gov/sra/?term=SRR5939545"}], "related_files": [{"relationship_type": "paired with", "file": {"uuid": "2c16c665-f6b0-4ee3-8760-a9e6461abe28", "@id": "/files-fastq/4DNFI2KBJG51/", "file_type_detailed": "reads (fastq)", "accession": "4DNFI2KBJG51", "paired_end": "2", "display_title": "4DNFI2KBJG51.fastq.gz", "file_type": "reads", "status": "released", "@type": ["FileFastq", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"display_title": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "status": "released", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric": {"@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4000000, "status": "released", "uuid": "da6fd9eb-79fd-400c-8ae9-e48744e22307", "@id": "/quality-metrics-fastqc/da6fd9eb-79fd-400c-8ae9-e48744e22307/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI5YX88CW/fastqc_report.html", "overall_quality_status": "PASS", "display_title": "QualityMetricFastqc from 2018-11-19", "Sequence length": "50", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"dbxrefs": ["SRA:SRR5939545"], "display_title": "4DNFI2KBJG51.fastq.gz", "file_type_detailed": "reads (fastq)", "href": "/files-fastq/4DNFI2KBJG51/@@download/4DNFI2KBJG51.fastq.gz", "status": "released", "uuid": "2c16c665-f6b0-4ee3-8760-a9e6461abe28", "@type": ["FileFastq", "File", "Item"], "paired_end": "2", "@id": "/files-fastq/4DNFI2KBJG51/", "file_classification": "raw file", "accession": "4DNFI2KBJG51", "file_size": 194044640, "upload_key": "2c16c665-f6b0-4ee3-8760-a9e6461abe28/4DNFI2KBJG51.fastq.gz", "file_type": "reads", "external_references": [{"ref": "SRA:SRR5939545", "uri": "https://www.ncbi.nlm.nih.gov/sra/?term=SRR5939545"}], "related_files": [{"relationship_type": "paired with", "file": {"uuid": "fd12c03d-cedc-4a78-9cfb-952f6a3b733a", "@id": "/files-fastq/4DNFI5YX88CW/", "file_type_detailed": "reads (fastq)", "accession": "4DNFI5YX88CW", "paired_end": "1", "display_title": "4DNFI5YX88CW.fastq.gz", "file_type": "reads", "status": "released", "@type": ["FileFastq", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"display_title": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "status": "released", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric": {"@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4000000, "status": "released", "uuid": "54023979-b2b2-443c-9998-77fd710d3eb0", "@id": "/quality-metrics-fastqc/54023979-b2b2-443c-9998-77fd710d3eb0/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI2KBJG51/fastqc_report.html", "overall_quality_status": "PASS", "display_title": "QualityMetricFastqc from 2018-11-15", "Sequence length": "50", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"dbxrefs": ["SRA:SRR5939544"], "display_title": "4DNFIJEDVBXT.fastq.gz", "file_type_detailed": "reads (fastq)", "href": "/files-fastq/4DNFIJEDVBXT/@@download/4DNFIJEDVBXT.fastq.gz", "status": "released", "uuid": "80351a2e-6b6f-492c-b59f-4c0ff7d966d5", "@type": ["FileFastq", "File", "Item"], "paired_end": "1", "@id": "/files-fastq/4DNFIJEDVBXT/", "file_classification": "raw file", "accession": "4DNFIJEDVBXT", "file_size": 196484869, "upload_key": "80351a2e-6b6f-492c-b59f-4c0ff7d966d5/4DNFIJEDVBXT.fastq.gz", "file_type": "reads", "external_references": [{"ref": "SRA:SRR5939544", "uri": "https://www.ncbi.nlm.nih.gov/sra/?term=SRR5939544"}], "related_files": [{"relationship_type": "paired with", "file": {"uuid": "5ec46316-f6ab-495d-8950-11b12e2e42df", "@id": "/files-fastq/4DNFI5GGZTYO/", "file_type_detailed": "reads (fastq)", "accession": "4DNFI5GGZTYO", "paired_end": "2", "display_title": "4DNFI5GGZTYO.fastq.gz", "file_type": "reads", "status": "released", "@type": ["FileFastq", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"display_title": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "status": "released", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric": {"@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4000000, "status": "released", "uuid": "b33cc4c1-0788-4b2d-800a-232770aaa761", "@id": "/quality-metrics-fastqc/b33cc4c1-0788-4b2d-800a-232770aaa761/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIJEDVBXT/fastqc_report.html", "overall_quality_status": "PASS", "display_title": "QualityMetricFastqc from 2018-11-15", "Sequence length": "50", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"dbxrefs": ["SRA:SRR5939544"], "display_title": "4DNFI5GGZTYO.fastq.gz", "file_type_detailed": "reads (fastq)", "href": "/files-fastq/4DNFI5GGZTYO/@@download/4DNFI5GGZTYO.fastq.gz", "status": "released", "uuid": "5ec46316-f6ab-495d-8950-11b12e2e42df", "@type": ["FileFastq", "File", "Item"], "paired_end": "2", "@id": "/files-fastq/4DNFI5GGZTYO/", "file_classification": "raw file", "accession": "4DNFI5GGZTYO", "file_size": 191649315, "upload_key": "5ec46316-f6ab-495d-8950-11b12e2e42df/4DNFI5GGZTYO.fastq.gz", "file_type": "reads", "external_references": [{"ref": "SRA:SRR5939544", "uri": "https://www.ncbi.nlm.nih.gov/sra/?term=SRR5939544"}], "related_files": [{"relationship_type": "paired with", "file": {"uuid": "80351a2e-6b6f-492c-b59f-4c0ff7d966d5", "@id": "/files-fastq/4DNFIJEDVBXT/", "file_type_detailed": "reads (fastq)", "accession": "4DNFIJEDVBXT", "paired_end": "1", "display_title": "4DNFIJEDVBXT.fastq.gz", "file_type": "reads", "status": "released", "@type": ["FileFastq", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"display_title": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "status": "released", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric": {"@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4000000, "status": "released", "uuid": "4cc948d9-b58b-4d2e-8edc-fd416b26d40f", "@id": "/quality-metrics-fastqc/4cc948d9-b58b-4d2e-8edc-fd416b26d40f/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI5GGZTYO/fastqc_report.html", "overall_quality_status": "PASS", "display_title": "QualityMetricFastqc from 2018-11-15", "Sequence length": "50", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"dbxrefs": ["SRA:SRR5939543"], "display_title": "4DNFILIND83J.fastq.gz", "file_type_detailed": "reads (fastq)", "href": "/files-fastq/4DNFILIND83J/@@download/4DNFILIND83J.fastq.gz", "status": "released", "uuid": "9931eb60-514b-4e51-9fc6-4905a4b8122f", "@type": ["FileFastq", "File", "Item"], "paired_end": "1", "@id": "/files-fastq/4DNFILIND83J/", "file_classification": "raw file", "accession": "4DNFILIND83J", "file_size": 194197877, "upload_key": "9931eb60-514b-4e51-9fc6-4905a4b8122f/4DNFILIND83J.fastq.gz", "file_type": "reads", "external_references": [{"ref": "SRA:SRR5939543", "uri": "https://www.ncbi.nlm.nih.gov/sra/?term=SRR5939543"}], "related_files": [{"relationship_type": "paired with", "file": {"uuid": "590e3964-c499-4893-a0c6-7e1af0bffb68", "@id": "/files-fastq/4DNFIFTWILX3/", "file_type_detailed": "reads (fastq)", "accession": "4DNFIFTWILX3", "paired_end": "2", "display_title": "4DNFIFTWILX3.fastq.gz", "file_type": "reads", "status": "released", "@type": ["FileFastq", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"display_title": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "status": "released", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric": {"@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4000000, "status": "released", "uuid": "8390e975-ba7f-4bb0-9a71-65a3fa0a75aa", "@id": "/quality-metrics-fastqc/8390e975-ba7f-4bb0-9a71-65a3fa0a75aa/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFILIND83J/fastqc_report.html", "overall_quality_status": "PASS", "display_title": "QualityMetricFastqc from 2018-11-19", "Sequence length": "50", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"dbxrefs": ["SRA:SRR5939543"], "display_title": "4DNFIFTWILX3.fastq.gz", "file_type_detailed": "reads (fastq)", "href": "/files-fastq/4DNFIFTWILX3/@@download/4DNFIFTWILX3.fastq.gz", "status": "released", "uuid": "590e3964-c499-4893-a0c6-7e1af0bffb68", "@type": ["FileFastq", "File", "Item"], "paired_end": "2", "@id": "/files-fastq/4DNFIFTWILX3/", "file_classification": "raw file", "accession": "4DNFIFTWILX3", "file_size": 189543945, "upload_key": "590e3964-c499-4893-a0c6-7e1af0bffb68/4DNFIFTWILX3.fastq.gz", "file_type": "reads", "external_references": [{"ref": "SRA:SRR5939543", "uri": "https://www.ncbi.nlm.nih.gov/sra/?term=SRR5939543"}], "related_files": [{"relationship_type": "paired with", "file": {"uuid": "9931eb60-514b-4e51-9fc6-4905a4b8122f", "@id": "/files-fastq/4DNFILIND83J/", "file_type_detailed": "reads (fastq)", "accession": "4DNFILIND83J", "paired_end": "1", "display_title": "4DNFILIND83J.fastq.gz", "file_type": "reads", "status": "released", "@type": ["FileFastq", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"display_title": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "status": "released", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric": {"@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4000000, "status": "released", "uuid": "f1ee1b74-c896-45aa-b088-e84eb1981733", "@id": "/quality-metrics-fastqc/f1ee1b74-c896-45aa-b088-e84eb1981733/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIFTWILX3/fastqc_report.html", "overall_quality_status": "PASS", "display_title": "QualityMetricFastqc from 2018-11-15", "Sequence length": "50", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"dbxrefs": ["SRA:SRR5939550"], "display_title": "4DNFIFZ2N3KK.fastq.gz", "file_type_detailed": "reads (fastq)", "href": "/files-fastq/4DNFIFZ2N3KK/@@download/4DNFIFZ2N3KK.fastq.gz", "status": "released", "uuid": "d2f1a904-51c2-46d8-9ad5-d6643fef6414", "@type": ["FileFastq", "File", "Item"], "paired_end": "1", "@id": "/files-fastq/4DNFIFZ2N3KK/", "file_classification": "raw file", "accession": "4DNFIFZ2N3KK", "file_size": 188560426, "upload_key": "d2f1a904-51c2-46d8-9ad5-d6643fef6414/4DNFIFZ2N3KK.fastq.gz", "file_type": "reads", "external_references": [{"ref": "SRA:SRR5939550", "uri": "https://www.ncbi.nlm.nih.gov/sra/?term=SRR5939550"}], "related_files": [{"relationship_type": "paired with", "file": {"uuid": "182c24e7-1c60-4d5a-9e44-b24fefc3bdf1", "@id": "/files-fastq/4DNFIA7O5CP2/", "file_type_detailed": "reads (fastq)", "accession": "4DNFIA7O5CP2", "paired_end": "2", "display_title": "4DNFIA7O5CP2.fastq.gz", "file_type": "reads", "status": "released", "@type": ["FileFastq", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"display_title": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "status": "released", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric": {"@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4000000, "status": "released", "uuid": "07445ea4-0613-4553-93ca-b156c4f05e5f", "@id": "/quality-metrics-fastqc/07445ea4-0613-4553-93ca-b156c4f05e5f/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIFZ2N3KK/fastqc_report.html", "overall_quality_status": "PASS", "display_title": "QualityMetricFastqc from 2018-11-15", "Sequence length": "50", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"dbxrefs": ["SRA:SRR5939550"], "display_title": "4DNFIA7O5CP2.fastq.gz", "file_type_detailed": "reads (fastq)", "href": "/files-fastq/4DNFIA7O5CP2/@@download/4DNFIA7O5CP2.fastq.gz", "status": "released", "uuid": "182c24e7-1c60-4d5a-9e44-b24fefc3bdf1", "@type": ["FileFastq", "File", "Item"], "paired_end": "2", "@id": "/files-fastq/4DNFIA7O5CP2/", "file_classification": "raw file", "accession": "4DNFIA7O5CP2", "file_size": 183134484, "upload_key": "182c24e7-1c60-4d5a-9e44-b24fefc3bdf1/4DNFIA7O5CP2.fastq.gz", "file_type": "reads", "external_references": [{"ref": "SRA:SRR5939550", "uri": "https://www.ncbi.nlm.nih.gov/sra/?term=SRR5939550"}], "related_files": [{"relationship_type": "paired with", "file": {"uuid": "d2f1a904-51c2-46d8-9ad5-d6643fef6414", "@id": "/files-fastq/4DNFIFZ2N3KK/", "file_type_detailed": "reads (fastq)", "accession": "4DNFIFZ2N3KK", "paired_end": "1", "display_title": "4DNFIFZ2N3KK.fastq.gz", "file_type": "reads", "status": "released", "@type": ["FileFastq", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"display_title": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "status": "released", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric": {"@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4000000, "status": "released", "uuid": "690bcd18-f944-4443-ac18-e86c344e18bc", "@id": "/quality-metrics-fastqc/690bcd18-f944-4443-ac18-e86c344e18bc/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIA7O5CP2/fastqc_report.html", "overall_quality_status": "PASS", "display_title": "QualityMetricFastqc from 2018-11-15", "Sequence length": "50", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"dbxrefs": ["SRA:SRR5939541"], "display_title": "4DNFIZPPAF3X.fastq.gz", "file_type_detailed": "reads (fastq)", "href": "/files-fastq/4DNFIZPPAF3X/@@download/4DNFIZPPAF3X.fastq.gz", "status": "released", "uuid": "cb64957a-6b24-4554-ba0e-3e45557ae28a", "@type": ["FileFastq", "File", "Item"], "paired_end": "1", "@id": "/files-fastq/4DNFIZPPAF3X/", "file_classification": "raw file", "accession": "4DNFIZPPAF3X", "file_size": 191008176, "upload_key": "cb64957a-6b24-4554-ba0e-3e45557ae28a/4DNFIZPPAF3X.fastq.gz", "file_type": "reads", "external_references": [{"ref": "SRA:SRR5939541", "uri": "https://www.ncbi.nlm.nih.gov/sra/?term=SRR5939541"}], "related_files": [{"relationship_type": "paired with", "file": {"uuid": "4c755d7e-81e2-4551-aa47-1b66e415c161", "@id": "/files-fastq/4DNFINFIGUE5/", "file_type_detailed": "reads (fastq)", "accession": "4DNFINFIGUE5", "paired_end": "2", "display_title": "4DNFINFIGUE5.fastq.gz", "file_type": "reads", "status": "released", "@type": ["FileFastq", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"display_title": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "status": "released", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric": {"@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4000000, "status": "released", "uuid": "9d2e794b-9566-438e-9354-b58be178ef6f", "@id": "/quality-metrics-fastqc/9d2e794b-9566-438e-9354-b58be178ef6f/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIZPPAF3X/fastqc_report.html", "overall_quality_status": "PASS", "display_title": "QualityMetricFastqc from 2018-11-15", "Sequence length": "50", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"dbxrefs": ["SRA:SRR5939541"], "display_title": "4DNFINFIGUE5.fastq.gz", "file_type_detailed": "reads (fastq)", "href": "/files-fastq/4DNFINFIGUE5/@@download/4DNFINFIGUE5.fastq.gz", "status": "released", "uuid": "4c755d7e-81e2-4551-aa47-1b66e415c161", "@type": ["FileFastq", "File", "Item"], "paired_end": "2", "@id": "/files-fastq/4DNFINFIGUE5/", "file_classification": "raw file", "accession": "4DNFINFIGUE5", "file_size": 186028489, "upload_key": "4c755d7e-81e2-4551-aa47-1b66e415c161/4DNFINFIGUE5.fastq.gz", "file_type": "reads", "external_references": [{"ref": "SRA:SRR5939541", "uri": "https://www.ncbi.nlm.nih.gov/sra/?term=SRR5939541"}], "related_files": [{"relationship_type": "paired with", "file": {"uuid": "cb64957a-6b24-4554-ba0e-3e45557ae28a", "@id": "/files-fastq/4DNFIZPPAF3X/", "file_type_detailed": "reads (fastq)", "accession": "4DNFIZPPAF3X", "paired_end": "1", "display_title": "4DNFIZPPAF3X.fastq.gz", "file_type": "reads", "status": "released", "@type": ["FileFastq", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"display_title": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "status": "released", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric": {"@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4000000, "status": "released", "uuid": "c40a5971-4733-4093-9439-fc408cf25d62", "@id": "/quality-metrics-fastqc/c40a5971-4733-4093-9439-fc408cf25d62/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFINFIGUE5/fastqc_report.html", "overall_quality_status": "PASS", "display_title": "QualityMetricFastqc from 2018-11-15", "Sequence length": "50", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"dbxrefs": ["SRA:SRR5939540"], "display_title": "4DNFIKT9MB16.fastq.gz", "file_type_detailed": "reads (fastq)", "href": "/files-fastq/4DNFIKT9MB16/@@download/4DNFIKT9MB16.fastq.gz", "status": "released", "uuid": "62186cf6-16ae-4733-8b0f-d10c212484b0", "@type": ["FileFastq", "File", "Item"], "paired_end": "1", "@id": "/files-fastq/4DNFIKT9MB16/", "file_classification": "raw file", "accession": "4DNFIKT9MB16", "file_size": 189986679, "upload_key": "62186cf6-16ae-4733-8b0f-d10c212484b0/4DNFIKT9MB16.fastq.gz", "file_type": "reads", "external_references": [{"ref": "SRA:SRR5939540", "uri": "https://www.ncbi.nlm.nih.gov/sra/?term=SRR5939540"}], "related_files": [{"relationship_type": "paired with", "file": {"uuid": "b4b31752-8492-4f7e-b7d9-384b43ea5fcc", "@id": "/files-fastq/4DNFILY9JWZG/", "file_type_detailed": "reads (fastq)", "accession": "4DNFILY9JWZG", "paired_end": "2", "display_title": "4DNFILY9JWZG.fastq.gz", "file_type": "reads", "status": "released", "@type": ["FileFastq", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"display_title": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "status": "released", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric": {"@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4000000, "status": "released", "uuid": "9fe81cd0-e949-4bc1-915e-79b527b4812a", "@id": "/quality-metrics-fastqc/9fe81cd0-e949-4bc1-915e-79b527b4812a/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIKT9MB16/fastqc_report.html", "overall_quality_status": "PASS", "display_title": "QualityMetricFastqc from 2018-11-19", "Sequence length": "50", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"dbxrefs": ["SRA:SRR5939540"], "display_title": "4DNFILY9JWZG.fastq.gz", "file_type_detailed": "reads (fastq)", "href": "/files-fastq/4DNFILY9JWZG/@@download/4DNFILY9JWZG.fastq.gz", "status": "released", "uuid": "b4b31752-8492-4f7e-b7d9-384b43ea5fcc", "@type": ["FileFastq", "File", "Item"], "paired_end": "2", "@id": "/files-fastq/4DNFILY9JWZG/", "file_classification": "raw file", "accession": "4DNFILY9JWZG", "file_size": 184896063, "upload_key": "b4b31752-8492-4f7e-b7d9-384b43ea5fcc/4DNFILY9JWZG.fastq.gz", "file_type": "reads", "external_references": [{"ref": "SRA:SRR5939540", "uri": "https://www.ncbi.nlm.nih.gov/sra/?term=SRR5939540"}], "related_files": [{"relationship_type": "paired with", "file": {"uuid": "62186cf6-16ae-4733-8b0f-d10c212484b0", "@id": "/files-fastq/4DNFIKT9MB16/", "file_type_detailed": "reads (fastq)", "accession": "4DNFIKT9MB16", "paired_end": "1", "display_title": "4DNFIKT9MB16.fastq.gz", "file_type": "reads", "status": "released", "@type": ["FileFastq", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"display_title": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "status": "released", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric": {"@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4000000, "status": "released", "uuid": "6325510c-8bfc-4a26-859b-c43b74aad3e8", "@id": "/quality-metrics-fastqc/6325510c-8bfc-4a26-859b-c43b74aad3e8/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFILY9JWZG/fastqc_report.html", "overall_quality_status": "PASS", "display_title": "QualityMetricFastqc from 2018-11-15", "Sequence length": "50", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"dbxrefs": ["SRA:SRR5939551"], "display_title": "4DNFIK6JXWPJ.fastq.gz", "file_type_detailed": "reads (fastq)", "href": "/files-fastq/4DNFIK6JXWPJ/@@download/4DNFIK6JXWPJ.fastq.gz", "status": "released", "uuid": "0644333d-c08d-4da1-97a7-20f75a55e386", "@type": ["FileFastq", "File", "Item"], "paired_end": "1", "@id": "/files-fastq/4DNFIK6JXWPJ/", "file_classification": "raw file", "accession": "4DNFIK6JXWPJ", "file_size": 191845934, "upload_key": "0644333d-c08d-4da1-97a7-20f75a55e386/4DNFIK6JXWPJ.fastq.gz", "file_type": "reads", "external_references": [{"ref": "SRA:SRR5939551", "uri": "https://www.ncbi.nlm.nih.gov/sra/?term=SRR5939551"}], "related_files": [{"relationship_type": "paired with", "file": {"uuid": "f5a24e67-b1b0-4616-a818-d5eca1b82342", "@id": "/files-fastq/4DNFI1K6PIN2/", "file_type_detailed": "reads (fastq)", "accession": "4DNFI1K6PIN2", "paired_end": "2", "display_title": "4DNFI1K6PIN2.fastq.gz", "file_type": "reads", "status": "released", "@type": ["FileFastq", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"display_title": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "status": "released", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric": {"@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4000000, "status": "released", "uuid": "f276ea9a-2d78-44e4-a563-ed6c37b6a2e5", "@id": "/quality-metrics-fastqc/f276ea9a-2d78-44e4-a563-ed6c37b6a2e5/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIK6JXWPJ/fastqc_report.html", "overall_quality_status": "PASS", "display_title": "QualityMetricFastqc from 2018-11-19", "Sequence length": "50", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"dbxrefs": ["SRA:SRR5939551"], "display_title": "4DNFI1K6PIN2.fastq.gz", "file_type_detailed": "reads (fastq)", "href": "/files-fastq/4DNFI1K6PIN2/@@download/4DNFI1K6PIN2.fastq.gz", "status": "released", "uuid": "f5a24e67-b1b0-4616-a818-d5eca1b82342", "@type": ["FileFastq", "File", "Item"], "paired_end": "2", "@id": "/files-fastq/4DNFI1K6PIN2/", "file_classification": "raw file", "accession": "4DNFI1K6PIN2", "file_size": 186702002, "upload_key": "f5a24e67-b1b0-4616-a818-d5eca1b82342/4DNFI1K6PIN2.fastq.gz", "file_type": "reads", "external_references": [{"ref": "SRA:SRR5939551", "uri": "https://www.ncbi.nlm.nih.gov/sra/?term=SRR5939551"}], "related_files": [{"relationship_type": "paired with", "file": {"uuid": "0644333d-c08d-4da1-97a7-20f75a55e386", "@id": "/files-fastq/4DNFIK6JXWPJ/", "file_type_detailed": "reads (fastq)", "accession": "4DNFIK6JXWPJ", "paired_end": "1", "display_title": "4DNFIK6JXWPJ.fastq.gz", "file_type": "reads", "status": "released", "@type": ["FileFastq", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"display_title": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "status": "released", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric": {"@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4000000, "status": "released", "uuid": "3ed889c3-bed0-4550-896a-b0a8d14cef88", "@id": "/quality-metrics-fastqc/3ed889c3-bed0-4550-896a-b0a8d14cef88/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI1K6PIN2/fastqc_report.html", "overall_quality_status": "PASS", "display_title": "QualityMetricFastqc from 2018-11-19", "Sequence length": "50", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"dbxrefs": ["SRA:SRR5939552"], "display_title": "4DNFIOCY524N.fastq.gz", "file_type_detailed": "reads (fastq)", "href": "/files-fastq/4DNFIOCY524N/@@download/4DNFIOCY524N.fastq.gz", "status": "released", "uuid": "51914fdb-88f3-4fd5-bfe1-36d0f47fb714", "@type": ["FileFastq", "File", "Item"], "paired_end": "1", "@id": "/files-fastq/4DNFIOCY524N/", "file_classification": "raw file", "accession": "4DNFIOCY524N", "file_size": 193973405, "upload_key": "51914fdb-88f3-4fd5-bfe1-36d0f47fb714/4DNFIOCY524N.fastq.gz", "file_type": "reads", "external_references": [{"ref": "SRA:SRR5939552", "uri": "https://www.ncbi.nlm.nih.gov/sra/?term=SRR5939552"}], "related_files": [{"relationship_type": "paired with", "file": {"uuid": "70580cdf-9bb0-43b0-8b96-31f10700dd17", "@id": "/files-fastq/4DNFI5F63EQQ/", "file_type_detailed": "reads (fastq)", "accession": "4DNFI5F63EQQ", "paired_end": "2", "display_title": "4DNFI5F63EQQ.fastq.gz", "file_type": "reads", "status": "released", "@type": ["FileFastq", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"display_title": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "status": "released", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric": {"@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4000000, "status": "released", "uuid": "26a64922-8b8b-47e6-89b7-e23f0c044089", "@id": "/quality-metrics-fastqc/26a64922-8b8b-47e6-89b7-e23f0c044089/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIOCY524N/fastqc_report.html", "overall_quality_status": "PASS", "display_title": "QualityMetricFastqc from 2018-11-15", "Sequence length": "50", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"dbxrefs": ["SRA:SRR5939552"], "display_title": "4DNFI5F63EQQ.fastq.gz", "file_type_detailed": "reads (fastq)", "href": "/files-fastq/4DNFI5F63EQQ/@@download/4DNFI5F63EQQ.fastq.gz", "status": "released", "uuid": "70580cdf-9bb0-43b0-8b96-31f10700dd17", "@type": ["FileFastq", "File", "Item"], "paired_end": "2", "@id": "/files-fastq/4DNFI5F63EQQ/", "file_classification": "raw file", "accession": "4DNFI5F63EQQ", "file_size": 188803309, "upload_key": "70580cdf-9bb0-43b0-8b96-31f10700dd17/4DNFI5F63EQQ.fastq.gz", "file_type": "reads", "external_references": [{"ref": "SRA:SRR5939552", "uri": "https://www.ncbi.nlm.nih.gov/sra/?term=SRR5939552"}], "related_files": [{"relationship_type": "paired with", "file": {"uuid": "51914fdb-88f3-4fd5-bfe1-36d0f47fb714", "@id": "/files-fastq/4DNFIOCY524N/", "file_type_detailed": "reads (fastq)", "accession": "4DNFIOCY524N", "paired_end": "1", "display_title": "4DNFIOCY524N.fastq.gz", "file_type": "reads", "status": "released", "@type": ["FileFastq", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"display_title": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "status": "released", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric": {"@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4000000, "status": "released", "uuid": "232e8ebf-0dd8-4aa6-b514-65fd3bfcd27f", "@id": "/quality-metrics-fastqc/232e8ebf-0dd8-4aa6-b514-65fd3bfcd27f/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI5F63EQQ/fastqc_report.html", "overall_quality_status": "PASS", "display_title": "QualityMetricFastqc from 2018-11-15", "Sequence length": "50", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"dbxrefs": ["SRA:SRR5939553"], "display_title": "4DNFIELUL796.fastq.gz", "file_type_detailed": "reads (fastq)", "href": "/files-fastq/4DNFIELUL796/@@download/4DNFIELUL796.fastq.gz", "status": "released", "uuid": "d47c0e12-ce99-4830-9816-2ffd58e668fe", "@type": ["FileFastq", "File", "Item"], "paired_end": "1", "@id": "/files-fastq/4DNFIELUL796/", "file_classification": "raw file", "accession": "4DNFIELUL796", "file_size": 195956125, "upload_key": "d47c0e12-ce99-4830-9816-2ffd58e668fe/4DNFIELUL796.fastq.gz", "file_type": "reads", "external_references": [{"ref": "SRA:SRR5939553", "uri": "https://www.ncbi.nlm.nih.gov/sra/?term=SRR5939553"}], "related_files": [{"relationship_type": "paired with", "file": {"uuid": "28ed25bd-72ea-49c2-ae51-0816a0fdafe5", "@id": "/files-fastq/4DNFIW87RYP5/", "file_type_detailed": "reads (fastq)", "accession": "4DNFIW87RYP5", "paired_end": "2", "display_title": "4DNFIW87RYP5.fastq.gz", "file_type": "reads", "status": "released", "@type": ["FileFastq", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"display_title": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "status": "released", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric": {"@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4000000, "status": "released", "uuid": "bec1ec0c-077f-4f78-a07f-13870b6d8219", "@id": "/quality-metrics-fastqc/bec1ec0c-077f-4f78-a07f-13870b6d8219/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIELUL796/fastqc_report.html", "overall_quality_status": "PASS", "display_title": "QualityMetricFastqc from 2018-11-19", "Sequence length": "50", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"dbxrefs": ["SRA:SRR5939553"], "display_title": "4DNFIW87RYP5.fastq.gz", "file_type_detailed": "reads (fastq)", "href": "/files-fastq/4DNFIW87RYP5/@@download/4DNFIW87RYP5.fastq.gz", "status": "released", "uuid": "28ed25bd-72ea-49c2-ae51-0816a0fdafe5", "@type": ["FileFastq", "File", "Item"], "paired_end": "2", "@id": "/files-fastq/4DNFIW87RYP5/", "file_classification": "raw file", "accession": "4DNFIW87RYP5", "file_size": 190760688, "upload_key": "28ed25bd-72ea-49c2-ae51-0816a0fdafe5/4DNFIW87RYP5.fastq.gz", "file_type": "reads", "external_references": [{"ref": "SRA:SRR5939553", "uri": "https://www.ncbi.nlm.nih.gov/sra/?term=SRR5939553"}], "related_files": [{"relationship_type": "paired with", "file": {"uuid": "d47c0e12-ce99-4830-9816-2ffd58e668fe", "@id": "/files-fastq/4DNFIELUL796/", "file_type_detailed": "reads (fastq)", "accession": "4DNFIELUL796", "paired_end": "1", "display_title": "4DNFIELUL796.fastq.gz", "file_type": "reads", "status": "released", "@type": ["FileFastq", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"display_title": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "status": "released", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric": {"@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4000000, "status": "released", "uuid": "9fb678f3-9b0b-499b-978c-e643f7ece639", "@id": "/quality-metrics-fastqc/9fb678f3-9b0b-499b-978c-e643f7ece639/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIW87RYP5/fastqc_report.html", "overall_quality_status": "PASS", "display_title": "QualityMetricFastqc from 2018-11-15", "Sequence length": "50", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"dbxrefs": ["SRA:SRR5939554"], "display_title": "4DNFIQK159KB.fastq.gz", "file_type_detailed": "reads (fastq)", "href": "/files-fastq/4DNFIQK159KB/@@download/4DNFIQK159KB.fastq.gz", "status": "released", "uuid": "e98f07fe-7330-408a-aca2-f0854df40387", "@type": ["FileFastq", "File", "Item"], "paired_end": "1", "@id": "/files-fastq/4DNFIQK159KB/", "file_classification": "raw file", "accession": "4DNFIQK159KB", "file_size": 195700520, "upload_key": "e98f07fe-7330-408a-aca2-f0854df40387/4DNFIQK159KB.fastq.gz", "file_type": "reads", "external_references": [{"ref": "SRA:SRR5939554", "uri": "https://www.ncbi.nlm.nih.gov/sra/?term=SRR5939554"}], "related_files": [{"relationship_type": "paired with", "file": {"uuid": "cd2136b1-82cb-4a85-ab79-1bd9c4fef78d", "@id": "/files-fastq/4DNFINUW4DBL/", "file_type_detailed": "reads (fastq)", "accession": "4DNFINUW4DBL", "paired_end": "2", "display_title": "4DNFINUW4DBL.fastq.gz", "file_type": "reads", "status": "released", "@type": ["FileFastq", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"display_title": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "status": "released", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric": {"@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4000000, "status": "released", "uuid": "3ade3928-1a37-40cd-87ee-25016c943860", "@id": "/quality-metrics-fastqc/3ade3928-1a37-40cd-87ee-25016c943860/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIQK159KB/fastqc_report.html", "overall_quality_status": "PASS", "display_title": "QualityMetricFastqc from 2018-11-19", "Sequence length": "50", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"dbxrefs": ["SRA:SRR5939554"], "display_title": "4DNFINUW4DBL.fastq.gz", "file_type_detailed": "reads (fastq)", "href": "/files-fastq/4DNFINUW4DBL/@@download/4DNFINUW4DBL.fastq.gz", "status": "released", "uuid": "cd2136b1-82cb-4a85-ab79-1bd9c4fef78d", "@type": ["FileFastq", "File", "Item"], "paired_end": "2", "@id": "/files-fastq/4DNFINUW4DBL/", "file_classification": "raw file", "accession": "4DNFINUW4DBL", "file_size": 191340667, "upload_key": "cd2136b1-82cb-4a85-ab79-1bd9c4fef78d/4DNFINUW4DBL.fastq.gz", "file_type": "reads", "external_references": [{"ref": "SRA:SRR5939554", "uri": "https://www.ncbi.nlm.nih.gov/sra/?term=SRR5939554"}], "related_files": [{"relationship_type": "paired with", "file": {"uuid": "e98f07fe-7330-408a-aca2-f0854df40387", "@id": "/files-fastq/4DNFIQK159KB/", "file_type_detailed": "reads (fastq)", "accession": "4DNFIQK159KB", "paired_end": "1", "display_title": "4DNFIQK159KB.fastq.gz", "file_type": "reads", "status": "released", "@type": ["FileFastq", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"display_title": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "status": "released", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric": {"@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4000000, "status": "released", "uuid": "80729f97-3de4-41b7-8c20-e02a01be52af", "@id": "/quality-metrics-fastqc/80729f97-3de4-41b7-8c20-e02a01be52af/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFINUW4DBL/fastqc_report.html", "overall_quality_status": "PASS", "display_title": "QualityMetricFastqc from 2018-11-15", "Sequence length": "50", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"dbxrefs": ["SRA:SRR5939555"], "display_title": "4DNFIWJ4QTKD.fastq.gz", "file_type_detailed": "reads (fastq)", "href": "/files-fastq/4DNFIWJ4QTKD/@@download/4DNFIWJ4QTKD.fastq.gz", "status": "released", "uuid": "d0edbb37-7a24-42c9-8773-bd7d78852d2e", "@type": ["FileFastq", "File", "Item"], "paired_end": "1", "@id": "/files-fastq/4DNFIWJ4QTKD/", "file_classification": "raw file", "accession": "4DNFIWJ4QTKD", "file_size": 187932398, "upload_key": "d0edbb37-7a24-42c9-8773-bd7d78852d2e/4DNFIWJ4QTKD.fastq.gz", "file_type": "reads", "external_references": [{"ref": "SRA:SRR5939555", "uri": "https://www.ncbi.nlm.nih.gov/sra/?term=SRR5939555"}], "related_files": [{"relationship_type": "paired with", "file": {"uuid": "27013df2-17b1-4236-9048-b11a77222a1d", "@id": "/files-fastq/4DNFI612UYD6/", "file_type_detailed": "reads (fastq)", "accession": "4DNFI612UYD6", "paired_end": "2", "display_title": "4DNFI612UYD6.fastq.gz", "file_type": "reads", "status": "released", "@type": ["FileFastq", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"display_title": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "status": "released", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric": {"@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4000000, "status": "released", "uuid": "1e30bd28-904b-4d7b-976f-74e0f9c1e599", "@id": "/quality-metrics-fastqc/1e30bd28-904b-4d7b-976f-74e0f9c1e599/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIWJ4QTKD/fastqc_report.html", "overall_quality_status": "PASS", "display_title": "QualityMetricFastqc from 2018-11-15", "Sequence length": "50", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"dbxrefs": ["SRA:SRR5939555"], "display_title": "4DNFI612UYD6.fastq.gz", "file_type_detailed": "reads (fastq)", "href": "/files-fastq/4DNFI612UYD6/@@download/4DNFI612UYD6.fastq.gz", "status": "released", "uuid": "27013df2-17b1-4236-9048-b11a77222a1d", "@type": ["FileFastq", "File", "Item"], "paired_end": "2", "@id": "/files-fastq/4DNFI612UYD6/", "file_classification": "raw file", "accession": "4DNFI612UYD6", "file_size": 182826221, "upload_key": "27013df2-17b1-4236-9048-b11a77222a1d/4DNFI612UYD6.fastq.gz", "file_type": "reads", "external_references": [{"ref": "SRA:SRR5939555", "uri": "https://www.ncbi.nlm.nih.gov/sra/?term=SRR5939555"}], "related_files": [{"relationship_type": "paired with", "file": {"uuid": "d0edbb37-7a24-42c9-8773-bd7d78852d2e", "@id": "/files-fastq/4DNFIWJ4QTKD/", "file_type_detailed": "reads (fastq)", "accession": "4DNFIWJ4QTKD", "paired_end": "1", "display_title": "4DNFIWJ4QTKD.fastq.gz", "file_type": "reads", "status": "released", "@type": ["FileFastq", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"display_title": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "status": "released", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric": {"@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4000000, "status": "released", "uuid": "98221d95-e6d1-49a7-8951-d1c2cc210737", "@id": "/quality-metrics-fastqc/98221d95-e6d1-49a7-8951-d1c2cc210737/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI612UYD6/fastqc_report.html", "overall_quality_status": "PASS", "display_title": "QualityMetricFastqc from 2018-11-15", "Sequence length": "50", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"dbxrefs": ["SRA:SRR5939556"], "display_title": "4DNFI3XZWZHX.fastq.gz", "file_type_detailed": "reads (fastq)", "href": "/files-fastq/4DNFI3XZWZHX/@@download/4DNFI3XZWZHX.fastq.gz", "status": "released", "uuid": "c25775de-b833-43e7-bc41-067cd85f2849", "@type": ["FileFastq", "File", "Item"], "paired_end": "1", "@id": "/files-fastq/4DNFI3XZWZHX/", "file_classification": "raw file", "accession": "4DNFI3XZWZHX", "file_size": 189175359, "upload_key": "c25775de-b833-43e7-bc41-067cd85f2849/4DNFI3XZWZHX.fastq.gz", "file_type": "reads", "external_references": [{"ref": "SRA:SRR5939556", "uri": "https://www.ncbi.nlm.nih.gov/sra/?term=SRR5939556"}], "related_files": [{"relationship_type": "paired with", "file": {"uuid": "9b64f4a5-2878-4619-9b87-b149135eed54", "@id": "/files-fastq/4DNFIKY1S8D2/", "file_type_detailed": "reads (fastq)", "accession": "4DNFIKY1S8D2", "paired_end": "2", "display_title": "4DNFIKY1S8D2.fastq.gz", "file_type": "reads", "status": "released", "@type": ["FileFastq", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"display_title": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "status": "released", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric": {"@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4000000, "status": "released", "uuid": "2d604008-ad41-4afc-9985-3132a8c580a3", "@id": "/quality-metrics-fastqc/2d604008-ad41-4afc-9985-3132a8c580a3/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI3XZWZHX/fastqc_report.html", "overall_quality_status": "PASS", "display_title": "QualityMetricFastqc from 2018-11-15", "Sequence length": "50", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"dbxrefs": ["SRA:SRR5939556"], "display_title": "4DNFIKY1S8D2.fastq.gz", "file_type_detailed": "reads (fastq)", "href": "/files-fastq/4DNFIKY1S8D2/@@download/4DNFIKY1S8D2.fastq.gz", "status": "released", "uuid": "9b64f4a5-2878-4619-9b87-b149135eed54", "@type": ["FileFastq", "File", "Item"], "paired_end": "2", "@id": "/files-fastq/4DNFIKY1S8D2/", "file_classification": "raw file", "accession": "4DNFIKY1S8D2", "file_size": 184220597, "upload_key": "9b64f4a5-2878-4619-9b87-b149135eed54/4DNFIKY1S8D2.fastq.gz", "file_type": "reads", "external_references": [{"ref": "SRA:SRR5939556", "uri": "https://www.ncbi.nlm.nih.gov/sra/?term=SRR5939556"}], "related_files": [{"relationship_type": "paired with", "file": {"uuid": "c25775de-b833-43e7-bc41-067cd85f2849", "@id": "/files-fastq/4DNFI3XZWZHX/", "file_type_detailed": "reads (fastq)", "accession": "4DNFI3XZWZHX", "paired_end": "1", "display_title": "4DNFI3XZWZHX.fastq.gz", "file_type": "reads", "status": "released", "@type": ["FileFastq", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"display_title": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "status": "released", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric": {"@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4000000, "status": "released", "uuid": "f3282125-d70b-45bc-8ed5-505ce278d5a0", "@id": "/quality-metrics-fastqc/f3282125-d70b-45bc-8ed5-505ce278d5a0/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIKY1S8D2/fastqc_report.html", "overall_quality_status": "PASS", "display_title": "QualityMetricFastqc from 2018-11-15", "Sequence length": "50", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"dbxrefs": ["SRA:SRR5939557"], "display_title": "4DNFIOMU7Y2O.fastq.gz", "file_type_detailed": "reads (fastq)", "href": "/files-fastq/4DNFIOMU7Y2O/@@download/4DNFIOMU7Y2O.fastq.gz", "status": "released", "uuid": "de0ad0e8-a98c-4b76-a847-27349dfa1b5a", "@type": ["FileFastq", "File", "Item"], "paired_end": "1", "@id": "/files-fastq/4DNFIOMU7Y2O/", "file_classification": "raw file", "accession": "4DNFIOMU7Y2O", "file_size": 192528614, "upload_key": "de0ad0e8-a98c-4b76-a847-27349dfa1b5a/4DNFIOMU7Y2O.fastq.gz", "file_type": "reads", "external_references": [{"ref": "SRA:SRR5939557", "uri": "https://www.ncbi.nlm.nih.gov/sra/?term=SRR5939557"}], "related_files": [{"relationship_type": "paired with", "file": {"uuid": "574eb509-6cb4-4f31-9849-61ce9e2911fe", "@id": "/files-fastq/4DNFI2JS77TA/", "file_type_detailed": "reads (fastq)", "accession": "4DNFI2JS77TA", "paired_end": "2", "display_title": "4DNFI2JS77TA.fastq.gz", "file_type": "reads", "status": "released", "@type": ["FileFastq", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"display_title": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "status": "released", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric": {"@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4000000, "status": "released", "uuid": "f1211d08-fab0-4ebb-bef9-289b886426ea", "@id": "/quality-metrics-fastqc/f1211d08-fab0-4ebb-bef9-289b886426ea/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIOMU7Y2O/fastqc_report.html", "overall_quality_status": "PASS", "display_title": "QualityMetricFastqc from 2018-11-19", "Sequence length": "50", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"dbxrefs": ["SRA:SRR5939557"], "display_title": "4DNFI2JS77TA.fastq.gz", "file_type_detailed": "reads (fastq)", "href": "/files-fastq/4DNFI2JS77TA/@@download/4DNFI2JS77TA.fastq.gz", "status": "released", "uuid": "574eb509-6cb4-4f31-9849-61ce9e2911fe", "@type": ["FileFastq", "File", "Item"], "paired_end": "2", "@id": "/files-fastq/4DNFI2JS77TA/", "file_classification": "raw file", "accession": "4DNFI2JS77TA", "file_size": 186567697, "upload_key": "574eb509-6cb4-4f31-9849-61ce9e2911fe/4DNFI2JS77TA.fastq.gz", "file_type": "reads", "external_references": [{"ref": "SRA:SRR5939557", "uri": "https://www.ncbi.nlm.nih.gov/sra/?term=SRR5939557"}], "related_files": [{"relationship_type": "paired with", "file": {"uuid": "de0ad0e8-a98c-4b76-a847-27349dfa1b5a", "@id": "/files-fastq/4DNFIOMU7Y2O/", "file_type_detailed": "reads (fastq)", "accession": "4DNFIOMU7Y2O", "paired_end": "1", "display_title": "4DNFIOMU7Y2O.fastq.gz", "file_type": "reads", "status": "released", "@type": ["FileFastq", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"display_title": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "status": "released", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric": {"@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4000000, "status": "released", "uuid": "089a4d0b-580b-4ceb-a7ac-5c1d83514800", "@id": "/quality-metrics-fastqc/089a4d0b-580b-4ceb-a7ac-5c1d83514800/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI2JS77TA/fastqc_report.html", "overall_quality_status": "PASS", "display_title": "QualityMetricFastqc from 2018-11-19", "Sequence length": "50", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"dbxrefs": ["SRA:SRR5939558"], "display_title": "4DNFIFGO1P75.fastq.gz", "file_type_detailed": "reads (fastq)", "href": "/files-fastq/4DNFIFGO1P75/@@download/4DNFIFGO1P75.fastq.gz", "status": "released", "uuid": "865e7cc8-0255-4431-b83f-408d821738ca", "@type": ["FileFastq", "File", "Item"], "paired_end": "1", "@id": "/files-fastq/4DNFIFGO1P75/", "file_classification": "raw file", "accession": "4DNFIFGO1P75", "file_size": 190553238, "upload_key": "865e7cc8-0255-4431-b83f-408d821738ca/4DNFIFGO1P75.fastq.gz", "file_type": "reads", "external_references": [{"ref": "SRA:SRR5939558", "uri": "https://www.ncbi.nlm.nih.gov/sra/?term=SRR5939558"}], "related_files": [{"relationship_type": "paired with", "file": {"uuid": "126a6fa8-a936-4164-9c0c-d2dfb3b66388", "@id": "/files-fastq/4DNFIHS1CL2J/", "file_type_detailed": "reads (fastq)", "accession": "4DNFIHS1CL2J", "paired_end": "2", "display_title": "4DNFIHS1CL2J.fastq.gz", "file_type": "reads", "status": "released", "@type": ["FileFastq", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"display_title": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "status": "released", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric": {"@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4000000, "status": "released", "uuid": "82c81760-6eb4-4e27-bd01-7168b9b1d47c", "@id": "/quality-metrics-fastqc/82c81760-6eb4-4e27-bd01-7168b9b1d47c/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIFGO1P75/fastqc_report.html", "overall_quality_status": "PASS", "display_title": "QualityMetricFastqc from 2018-11-15", "Sequence length": "50", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"dbxrefs": ["SRA:SRR5939558"], "display_title": "4DNFIHS1CL2J.fastq.gz", "file_type_detailed": "reads (fastq)", "href": "/files-fastq/4DNFIHS1CL2J/@@download/4DNFIHS1CL2J.fastq.gz", "status": "released", "uuid": "126a6fa8-a936-4164-9c0c-d2dfb3b66388", "@type": ["FileFastq", "File", "Item"], "paired_end": "2", "@id": "/files-fastq/4DNFIHS1CL2J/", "file_classification": "raw file", "accession": "4DNFIHS1CL2J", "file_size": 185188588, "upload_key": "126a6fa8-a936-4164-9c0c-d2dfb3b66388/4DNFIHS1CL2J.fastq.gz", "file_type": "reads", "external_references": [{"ref": "SRA:SRR5939558", "uri": "https://www.ncbi.nlm.nih.gov/sra/?term=SRR5939558"}], "related_files": [{"relationship_type": "paired with", "file": {"uuid": "865e7cc8-0255-4431-b83f-408d821738ca", "@id": "/files-fastq/4DNFIFGO1P75/", "file_type_detailed": "reads (fastq)", "accession": "4DNFIFGO1P75", "paired_end": "1", "display_title": "4DNFIFGO1P75.fastq.gz", "file_type": "reads", "status": "released", "@type": ["FileFastq", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"display_title": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "status": "released", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric": {"@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4000000, "status": "released", "uuid": "fe88762e-d417-4c3e-801b-d4f30ba34f3e", "@id": "/quality-metrics-fastqc/fe88762e-d417-4c3e-801b-d4f30ba34f3e/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIHS1CL2J/fastqc_report.html", "overall_quality_status": "PASS", "display_title": "QualityMetricFastqc from 2018-11-15", "Sequence length": "50", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"dbxrefs": ["SRA:SRR5939559"], "display_title": "4DNFIIHQPUGD.fastq.gz", "file_type_detailed": "reads (fastq)", "href": "/files-fastq/4DNFIIHQPUGD/@@download/4DNFIIHQPUGD.fastq.gz", "status": "released", "uuid": "5b906294-5158-4ef7-9561-fb8c6d4956cf", "@type": ["FileFastq", "File", "Item"], "paired_end": "1", "@id": "/files-fastq/4DNFIIHQPUGD/", "file_classification": "raw file", "accession": "4DNFIIHQPUGD", "file_size": 190630214, "upload_key": "5b906294-5158-4ef7-9561-fb8c6d4956cf/4DNFIIHQPUGD.fastq.gz", "file_type": "reads", "external_references": [{"ref": "SRA:SRR5939559", "uri": "https://www.ncbi.nlm.nih.gov/sra/?term=SRR5939559"}], "related_files": [{"relationship_type": "paired with", "file": {"uuid": "44fd1699-c797-446b-9289-f44a37a68d65", "@id": "/files-fastq/4DNFIPYC9K5S/", "file_type_detailed": "reads (fastq)", "accession": "4DNFIPYC9K5S", "paired_end": "2", "display_title": "4DNFIPYC9K5S.fastq.gz", "file_type": "reads", "status": "released", "@type": ["FileFastq", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"display_title": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "status": "released", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric": {"@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4000000, "status": "released", "uuid": "73675f44-6e06-4868-b8ce-23486ca39294", "@id": "/quality-metrics-fastqc/73675f44-6e06-4868-b8ce-23486ca39294/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIIHQPUGD/fastqc_report.html", "overall_quality_status": "PASS", "display_title": "QualityMetricFastqc from 2018-11-15", "Sequence length": "50", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"dbxrefs": ["SRA:SRR5939559"], "display_title": "4DNFIPYC9K5S.fastq.gz", "file_type_detailed": "reads (fastq)", "href": "/files-fastq/4DNFIPYC9K5S/@@download/4DNFIPYC9K5S.fastq.gz", "status": "released", "uuid": "44fd1699-c797-446b-9289-f44a37a68d65", "@type": ["FileFastq", "File", "Item"], "paired_end": "2", "@id": "/files-fastq/4DNFIPYC9K5S/", "file_classification": "raw file", "accession": "4DNFIPYC9K5S", "file_size": 185208969, "upload_key": "44fd1699-c797-446b-9289-f44a37a68d65/4DNFIPYC9K5S.fastq.gz", "file_type": "reads", "external_references": [{"ref": "SRA:SRR5939559", "uri": "https://www.ncbi.nlm.nih.gov/sra/?term=SRR5939559"}], "related_files": [{"relationship_type": "paired with", "file": {"uuid": "5b906294-5158-4ef7-9561-fb8c6d4956cf", "@id": "/files-fastq/4DNFIIHQPUGD/", "file_type_detailed": "reads (fastq)", "accession": "4DNFIIHQPUGD", "paired_end": "1", "display_title": "4DNFIIHQPUGD.fastq.gz", "file_type": "reads", "status": "released", "@type": ["FileFastq", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"display_title": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "status": "released", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric": {"@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4000000, "status": "released", "uuid": "eaedf5e9-89d0-4f7f-b23f-5e3dd45e9878", "@id": "/quality-metrics-fastqc/eaedf5e9-89d0-4f7f-b23f-5e3dd45e9878/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIPYC9K5S/fastqc_report.html", "overall_quality_status": "PASS", "display_title": "QualityMetricFastqc from 2018-11-15", "Sequence length": "50", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"dbxrefs": ["SRA:SRR5939560"], "display_title": "4DNFIL6S2HI9.fastq.gz", "file_type_detailed": "reads (fastq)", "href": "/files-fastq/4DNFIL6S2HI9/@@download/4DNFIL6S2HI9.fastq.gz", "status": "released", "uuid": "bae8b8ff-f68a-4512-8478-0ba32d9d2f57", "@type": ["FileFastq", "File", "Item"], "paired_end": "1", "@id": "/files-fastq/4DNFIL6S2HI9/", "file_classification": "raw file", "accession": "4DNFIL6S2HI9", "file_size": 192674576, "upload_key": "bae8b8ff-f68a-4512-8478-0ba32d9d2f57/4DNFIL6S2HI9.fastq.gz", "file_type": "reads", "external_references": [{"ref": "SRA:SRR5939560", "uri": "https://www.ncbi.nlm.nih.gov/sra/?term=SRR5939560"}], "related_files": [{"relationship_type": "paired with", "file": {"uuid": "e18b7444-66ba-45eb-ad44-205502d0788d", "@id": "/files-fastq/4DNFI2T2X9Q9/", "file_type_detailed": "reads (fastq)", "accession": "4DNFI2T2X9Q9", "paired_end": "2", "display_title": "4DNFI2T2X9Q9.fastq.gz", "file_type": "reads", "status": "released", "@type": ["FileFastq", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"display_title": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "status": "released", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric": {"@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4000000, "status": "released", "uuid": "1e1bc4a1-e81d-4bae-8f63-4750a3d50954", "@id": "/quality-metrics-fastqc/1e1bc4a1-e81d-4bae-8f63-4750a3d50954/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIL6S2HI9/fastqc_report.html", "overall_quality_status": "PASS", "display_title": "QualityMetricFastqc from 2018-11-15", "Sequence length": "50", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"dbxrefs": ["SRA:SRR5939560"], "display_title": "4DNFI2T2X9Q9.fastq.gz", "file_type_detailed": "reads (fastq)", "href": "/files-fastq/4DNFI2T2X9Q9/@@download/4DNFI2T2X9Q9.fastq.gz", "status": "released", "uuid": "e18b7444-66ba-45eb-ad44-205502d0788d", "@type": ["FileFastq", "File", "Item"], "paired_end": "2", "@id": "/files-fastq/4DNFI2T2X9Q9/", "file_classification": "raw file", "accession": "4DNFI2T2X9Q9", "file_size": 187564549, "upload_key": "e18b7444-66ba-45eb-ad44-205502d0788d/4DNFI2T2X9Q9.fastq.gz", "file_type": "reads", "external_references": [{"ref": "SRA:SRR5939560", "uri": "https://www.ncbi.nlm.nih.gov/sra/?term=SRR5939560"}], "related_files": [{"relationship_type": "paired with", "file": {"uuid": "bae8b8ff-f68a-4512-8478-0ba32d9d2f57", "@id": "/files-fastq/4DNFIL6S2HI9/", "file_type_detailed": "reads (fastq)", "accession": "4DNFIL6S2HI9", "paired_end": "1", "display_title": "4DNFIL6S2HI9.fastq.gz", "file_type": "reads", "status": "released", "@type": ["FileFastq", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"display_title": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "status": "released", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric": {"@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4000000, "status": "released", "uuid": "02b59130-7cb8-4f6a-b188-1ba6fc9a79ef", "@id": "/quality-metrics-fastqc/02b59130-7cb8-4f6a-b188-1ba6fc9a79ef/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI2T2X9Q9/fastqc_report.html", "overall_quality_status": "PASS", "display_title": "QualityMetricFastqc from 2018-11-15", "Sequence length": "50", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"dbxrefs": ["SRA:SRR5939561"], "display_title": "4DNFIMRH3RRF.fastq.gz", "file_type_detailed": "reads (fastq)", "href": "/files-fastq/4DNFIMRH3RRF/@@download/4DNFIMRH3RRF.fastq.gz", "status": "released", "uuid": "5c0ee06e-5225-4139-afca-1a0811988e39", "@type": ["FileFastq", "File", "Item"], "paired_end": "1", "@id": "/files-fastq/4DNFIMRH3RRF/", "file_classification": "raw file", "accession": "4DNFIMRH3RRF", "file_size": 194649625, "upload_key": "5c0ee06e-5225-4139-afca-1a0811988e39/4DNFIMRH3RRF.fastq.gz", "file_type": "reads", "external_references": [{"ref": "SRA:SRR5939561", "uri": "https://www.ncbi.nlm.nih.gov/sra/?term=SRR5939561"}], "related_files": [{"relationship_type": "paired with", "file": {"uuid": "95bd9f91-d850-49a7-bfd2-271beeaf0668", "@id": "/files-fastq/4DNFI1VY8FWB/", "file_type_detailed": "reads (fastq)", "accession": "4DNFI1VY8FWB", "paired_end": "2", "display_title": "4DNFI1VY8FWB.fastq.gz", "file_type": "reads", "status": "released", "@type": ["FileFastq", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"display_title": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "status": "released", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric": {"@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4000000, "status": "released", "uuid": "32adc2cd-50a5-4923-b556-3604652428fb", "@id": "/quality-metrics-fastqc/32adc2cd-50a5-4923-b556-3604652428fb/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIMRH3RRF/fastqc_report.html", "overall_quality_status": "PASS", "display_title": "QualityMetricFastqc from 2018-11-15", "Sequence length": "50", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"dbxrefs": ["SRA:SRR5939561"], "display_title": "4DNFI1VY8FWB.fastq.gz", "file_type_detailed": "reads (fastq)", "href": "/files-fastq/4DNFI1VY8FWB/@@download/4DNFI1VY8FWB.fastq.gz", "status": "released", "uuid": "95bd9f91-d850-49a7-bfd2-271beeaf0668", "@type": ["FileFastq", "File", "Item"], "paired_end": "2", "@id": "/files-fastq/4DNFI1VY8FWB/", "file_classification": "raw file", "accession": "4DNFI1VY8FWB", "file_size": 189952564, "upload_key": "95bd9f91-d850-49a7-bfd2-271beeaf0668/4DNFI1VY8FWB.fastq.gz", "file_type": "reads", "external_references": [{"ref": "SRA:SRR5939561", "uri": "https://www.ncbi.nlm.nih.gov/sra/?term=SRR5939561"}], "related_files": [{"relationship_type": "paired with", "file": {"uuid": "5c0ee06e-5225-4139-afca-1a0811988e39", "@id": "/files-fastq/4DNFIMRH3RRF/", "file_type_detailed": "reads (fastq)", "accession": "4DNFIMRH3RRF", "paired_end": "1", "display_title": "4DNFIMRH3RRF.fastq.gz", "file_type": "reads", "status": "released", "@type": ["FileFastq", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"display_title": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "status": "released", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric": {"@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4000000, "status": "released", "uuid": "934fbfb7-372d-44ab-bb91-5bd23654c68b", "@id": "/quality-metrics-fastqc/934fbfb7-372d-44ab-bb91-5bd23654c68b/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI1VY8FWB/fastqc_report.html", "overall_quality_status": "PASS", "display_title": "QualityMetricFastqc from 2018-11-19", "Sequence length": "50", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"dbxrefs": ["SRA:SRR5939562"], "display_title": "4DNFIAM8G2NY.fastq.gz", "file_type_detailed": "reads (fastq)", "href": "/files-fastq/4DNFIAM8G2NY/@@download/4DNFIAM8G2NY.fastq.gz", "status": "released", "uuid": "ce21dcbb-30ed-404e-a95f-f05dc5e58de3", "@type": ["FileFastq", "File", "Item"], "paired_end": "1", "@id": "/files-fastq/4DNFIAM8G2NY/", "file_classification": "raw file", "accession": "4DNFIAM8G2NY", "file_size": 196172099, "upload_key": "ce21dcbb-30ed-404e-a95f-f05dc5e58de3/4DNFIAM8G2NY.fastq.gz", "file_type": "reads", "external_references": [{"ref": "SRA:SRR5939562", "uri": "https://www.ncbi.nlm.nih.gov/sra/?term=SRR5939562"}], "related_files": [{"relationship_type": "paired with", "file": {"uuid": "cc6f57ce-ce89-4aae-9b7f-b3d7efc1183b", "@id": "/files-fastq/4DNFIR7G6EUF/", "file_type_detailed": "reads (fastq)", "accession": "4DNFIR7G6EUF", "paired_end": "2", "display_title": "4DNFIR7G6EUF.fastq.gz", "file_type": "reads", "status": "released", "@type": ["FileFastq", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"display_title": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "status": "released", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric": {"@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4000000, "status": "released", "uuid": "aa008a83-73cb-49ef-a66a-209f044d866c", "@id": "/quality-metrics-fastqc/aa008a83-73cb-49ef-a66a-209f044d866c/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIAM8G2NY/fastqc_report.html", "overall_quality_status": "PASS", "display_title": "QualityMetricFastqc from 2018-11-15", "Sequence length": "50", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"dbxrefs": ["SRA:SRR5939562"], "display_title": "4DNFIR7G6EUF.fastq.gz", "file_type_detailed": "reads (fastq)", "href": "/files-fastq/4DNFIR7G6EUF/@@download/4DNFIR7G6EUF.fastq.gz", "status": "released", "uuid": "cc6f57ce-ce89-4aae-9b7f-b3d7efc1183b", "@type": ["FileFastq", "File", "Item"], "paired_end": "2", "@id": "/files-fastq/4DNFIR7G6EUF/", "file_classification": "raw file", "accession": "4DNFIR7G6EUF", "file_size": 191917746, "upload_key": "cc6f57ce-ce89-4aae-9b7f-b3d7efc1183b/4DNFIR7G6EUF.fastq.gz", "file_type": "reads", "external_references": [{"ref": "SRA:SRR5939562", "uri": "https://www.ncbi.nlm.nih.gov/sra/?term=SRR5939562"}], "related_files": [{"relationship_type": "paired with", "file": {"uuid": "ce21dcbb-30ed-404e-a95f-f05dc5e58de3", "@id": "/files-fastq/4DNFIAM8G2NY/", "file_type_detailed": "reads (fastq)", "accession": "4DNFIAM8G2NY", "paired_end": "1", "display_title": "4DNFIAM8G2NY.fastq.gz", "file_type": "reads", "status": "released", "@type": ["FileFastq", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"display_title": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "status": "released", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric": {"@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4000000, "status": "released", "uuid": "bdeec4da-dd5a-4bbe-93f3-1197204cef30", "@id": "/quality-metrics-fastqc/bdeec4da-dd5a-4bbe-93f3-1197204cef30/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIR7G6EUF/fastqc_report.html", "overall_quality_status": "PASS", "display_title": "QualityMetricFastqc from 2018-11-15", "Sequence length": "50", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"dbxrefs": ["SRA:SRR5939563"], "display_title": "4DNFILDT6HJM.fastq.gz", "file_type_detailed": "reads (fastq)", "href": "/files-fastq/4DNFILDT6HJM/@@download/4DNFILDT6HJM.fastq.gz", "status": "released", "uuid": "a732f4d4-badb-45e4-a5ad-c913b3f20333", "@type": ["FileFastq", "File", "Item"], "paired_end": "1", "@id": "/files-fastq/4DNFILDT6HJM/", "file_classification": "raw file", "accession": "4DNFILDT6HJM", "file_size": 87334289, "upload_key": "a732f4d4-badb-45e4-a5ad-c913b3f20333/4DNFILDT6HJM.fastq.gz", "file_type": "reads", "external_references": [{"ref": "SRA:SRR5939563", "uri": "https://www.ncbi.nlm.nih.gov/sra/?term=SRR5939563"}], "related_files": [{"relationship_type": "paired with", "file": {"uuid": "7f3ebacf-f74e-4194-8881-ab77da3ab1d4", "@id": "/files-fastq/4DNFI6KMC8VI/", "file_type_detailed": "reads (fastq)", "accession": "4DNFI6KMC8VI", "paired_end": "2", "display_title": "4DNFI6KMC8VI.fastq.gz", "file_type": "reads", "status": "released", "@type": ["FileFastq", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"display_title": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "status": "released", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric": {"@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 1771715, "status": "released", "uuid": "df597c0f-8a13-4b19-88c6-c21f4b71a972", "@id": "/quality-metrics-fastqc/df597c0f-8a13-4b19-88c6-c21f4b71a972/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFILDT6HJM/fastqc_report.html", "overall_quality_status": "PASS", "display_title": "QualityMetricFastqc from 2018-11-15", "Sequence length": "50", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"dbxrefs": ["SRA:SRR5939563"], "display_title": "4DNFI6KMC8VI.fastq.gz", "file_type_detailed": "reads (fastq)", "href": "/files-fastq/4DNFI6KMC8VI/@@download/4DNFI6KMC8VI.fastq.gz", "status": "released", "uuid": "7f3ebacf-f74e-4194-8881-ab77da3ab1d4", "@type": ["FileFastq", "File", "Item"], "paired_end": "2", "@id": "/files-fastq/4DNFI6KMC8VI/", "file_classification": "raw file", "accession": "4DNFI6KMC8VI", "file_size": 85636609, "upload_key": "7f3ebacf-f74e-4194-8881-ab77da3ab1d4/4DNFI6KMC8VI.fastq.gz", "file_type": "reads", "external_references": [{"ref": "SRA:SRR5939563", "uri": "https://www.ncbi.nlm.nih.gov/sra/?term=SRR5939563"}], "related_files": [{"relationship_type": "paired with", "file": {"uuid": "a732f4d4-badb-45e4-a5ad-c913b3f20333", "@id": "/files-fastq/4DNFILDT6HJM/", "file_type_detailed": "reads (fastq)", "accession": "4DNFILDT6HJM", "paired_end": "1", "display_title": "4DNFILDT6HJM.fastq.gz", "file_type": "reads", "status": "released", "@type": ["FileFastq", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"display_title": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "status": "released", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric": {"@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 1771715, "status": "released", "uuid": "106881c4-4eca-4fd7-883f-e8929a2b5f74", "@id": "/quality-metrics-fastqc/106881c4-4eca-4fd7-883f-e8929a2b5f74/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI6KMC8VI/fastqc_report.html", "overall_quality_status": "PASS", "display_title": "QualityMetricFastqc from 2018-11-15", "Sequence length": "50", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"dbxrefs": ["SRA:SRR5939564"], "display_title": "4DNFIHDTHXG4.fastq.gz", "file_type_detailed": "reads (fastq)", "href": "/files-fastq/4DNFIHDTHXG4/@@download/4DNFIHDTHXG4.fastq.gz", "status": "released", "uuid": "625a357f-89dc-4749-aca8-1237b43b1a7a", "@type": ["FileFastq", "File", "Item"], "paired_end": "1", "@id": "/files-fastq/4DNFIHDTHXG4/", "file_classification": "raw file", "accession": "4DNFIHDTHXG4", "file_size": 194753861, "upload_key": "625a357f-89dc-4749-aca8-1237b43b1a7a/4DNFIHDTHXG4.fastq.gz", "file_type": "reads", "external_references": [{"ref": "SRA:SRR5939564", "uri": "https://www.ncbi.nlm.nih.gov/sra/?term=SRR5939564"}], "related_files": [{"relationship_type": "paired with", "file": {"uuid": "76ababd8-8613-4050-890e-4c9da99e624f", "@id": "/files-fastq/4DNFI5E6PU47/", "file_type_detailed": "reads (fastq)", "accession": "4DNFI5E6PU47", "paired_end": "2", "display_title": "4DNFI5E6PU47.fastq.gz", "file_type": "reads", "status": "released", "@type": ["FileFastq", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"display_title": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "status": "released", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric": {"@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4000000, "status": "released", "uuid": "6687948f-ccf9-4ffd-a7e4-4296429a8525", "@id": "/quality-metrics-fastqc/6687948f-ccf9-4ffd-a7e4-4296429a8525/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIHDTHXG4/fastqc_report.html", "overall_quality_status": "PASS", "display_title": "QualityMetricFastqc from 2018-11-15", "Sequence length": "50", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"dbxrefs": ["SRA:SRR5939564"], "display_title": "4DNFI5E6PU47.fastq.gz", "file_type_detailed": "reads (fastq)", "href": "/files-fastq/4DNFI5E6PU47/@@download/4DNFI5E6PU47.fastq.gz", "status": "released", "uuid": "76ababd8-8613-4050-890e-4c9da99e624f", "@type": ["FileFastq", "File", "Item"], "paired_end": "2", "@id": "/files-fastq/4DNFI5E6PU47/", "file_classification": "raw file", "accession": "4DNFI5E6PU47", "file_size": 188696378, "upload_key": "76ababd8-8613-4050-890e-4c9da99e624f/4DNFI5E6PU47.fastq.gz", "file_type": "reads", "external_references": [{"ref": "SRA:SRR5939564", "uri": "https://www.ncbi.nlm.nih.gov/sra/?term=SRR5939564"}], "related_files": [{"relationship_type": "paired with", "file": {"uuid": "625a357f-89dc-4749-aca8-1237b43b1a7a", "@id": "/files-fastq/4DNFIHDTHXG4/", "file_type_detailed": "reads (fastq)", "accession": "4DNFIHDTHXG4", "paired_end": "1", "display_title": "4DNFIHDTHXG4.fastq.gz", "file_type": "reads", "status": "released", "@type": ["FileFastq", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"display_title": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "status": "released", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric": {"@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4000000, "status": "released", "uuid": "7e888f4c-46e9-4c4e-9f65-c0189a962a63", "@id": "/quality-metrics-fastqc/7e888f4c-46e9-4c4e-9f65-c0189a962a63/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI5E6PU47/fastqc_report.html", "overall_quality_status": "PASS", "display_title": "QualityMetricFastqc from 2018-11-19", "Sequence length": "50", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"dbxrefs": ["SRA:SRR5939565"], "display_title": "4DNFI2CAMBE6.fastq.gz", "file_type_detailed": "reads (fastq)", "href": "/files-fastq/4DNFI2CAMBE6/@@download/4DNFI2CAMBE6.fastq.gz", "status": "released", "uuid": "e2682aaf-5d62-4ca4-b12e-8df46e71e777", "@type": ["FileFastq", "File", "Item"], "paired_end": "1", "@id": "/files-fastq/4DNFI2CAMBE6/", "file_classification": "raw file", "accession": "4DNFI2CAMBE6", "file_size": 196823640, "upload_key": "e2682aaf-5d62-4ca4-b12e-8df46e71e777/4DNFI2CAMBE6.fastq.gz", "file_type": "reads", "external_references": [{"ref": "SRA:SRR5939565", "uri": "https://www.ncbi.nlm.nih.gov/sra/?term=SRR5939565"}], "related_files": [{"relationship_type": "paired with", "file": {"uuid": "8d5b9156-3fba-4683-b8e9-7dfacfe3dde9", "@id": "/files-fastq/4DNFIT9ZNZIH/", "file_type_detailed": "reads (fastq)", "accession": "4DNFIT9ZNZIH", "paired_end": "2", "display_title": "4DNFIT9ZNZIH.fastq.gz", "file_type": "reads", "status": "released", "@type": ["FileFastq", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"display_title": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "status": "released", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric": {"@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4000000, "status": "released", "uuid": "489ba4f3-0402-41e5-ac41-1594eecc797e", "@id": "/quality-metrics-fastqc/489ba4f3-0402-41e5-ac41-1594eecc797e/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI2CAMBE6/fastqc_report.html", "overall_quality_status": "PASS", "display_title": "QualityMetricFastqc from 2018-11-19", "Sequence length": "50", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"dbxrefs": ["SRA:SRR5939565"], "display_title": "4DNFIT9ZNZIH.fastq.gz", "file_type_detailed": "reads (fastq)", "href": "/files-fastq/4DNFIT9ZNZIH/@@download/4DNFIT9ZNZIH.fastq.gz", "status": "released", "uuid": "8d5b9156-3fba-4683-b8e9-7dfacfe3dde9", "@type": ["FileFastq", "File", "Item"], "paired_end": "2", "@id": "/files-fastq/4DNFIT9ZNZIH/", "file_classification": "raw file", "accession": "4DNFIT9ZNZIH", "file_size": 190996467, "upload_key": "8d5b9156-3fba-4683-b8e9-7dfacfe3dde9/4DNFIT9ZNZIH.fastq.gz", "file_type": "reads", "external_references": [{"ref": "SRA:SRR5939565", "uri": "https://www.ncbi.nlm.nih.gov/sra/?term=SRR5939565"}], "related_files": [{"relationship_type": "paired with", "file": {"uuid": "e2682aaf-5d62-4ca4-b12e-8df46e71e777", "@id": "/files-fastq/4DNFI2CAMBE6/", "file_type_detailed": "reads (fastq)", "accession": "4DNFI2CAMBE6", "paired_end": "1", "display_title": "4DNFI2CAMBE6.fastq.gz", "file_type": "reads", "status": "released", "@type": ["FileFastq", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"display_title": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "status": "released", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric": {"@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4000000, "status": "released", "uuid": "a51cc148-3582-4e5e-9b6a-ad758d38fdf3", "@id": "/quality-metrics-fastqc/a51cc148-3582-4e5e-9b6a-ad758d38fdf3/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIT9ZNZIH/fastqc_report.html", "overall_quality_status": "PASS", "display_title": "QualityMetricFastqc from 2018-11-15", "Sequence length": "50", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"dbxrefs": ["SRA:SRR5939567"], "display_title": "4DNFILLXMMHD.fastq.gz", "file_type_detailed": "reads (fastq)", "href": "/files-fastq/4DNFILLXMMHD/@@download/4DNFILLXMMHD.fastq.gz", "status": "released", "uuid": "e6e20a0a-e18d-4b2f-95e2-f1221d024d42", "@type": ["FileFastq", "File", "Item"], "paired_end": "1", "@id": "/files-fastq/4DNFILLXMMHD/", "file_classification": "raw file", "accession": "4DNFILLXMMHD", "file_size": 189919268, "upload_key": "e6e20a0a-e18d-4b2f-95e2-f1221d024d42/4DNFILLXMMHD.fastq.gz", "file_type": "reads", "external_references": [{"ref": "SRA:SRR5939567", "uri": "https://www.ncbi.nlm.nih.gov/sra/?term=SRR5939567"}], "related_files": [{"relationship_type": "paired with", "file": {"uuid": "015c0bae-1fd7-4ad5-bc56-b3a6920716c8", "@id": "/files-fastq/4DNFI65VHE77/", "file_type_detailed": "reads (fastq)", "accession": "4DNFI65VHE77", "paired_end": "2", "display_title": "4DNFI65VHE77.fastq.gz", "file_type": "reads", "status": "released", "@type": ["FileFastq", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"display_title": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "status": "released", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric": {"@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4000000, "status": "released", "uuid": "3a39ea37-45f4-4cdc-b322-7ddafc54bc75", "@id": "/quality-metrics-fastqc/3a39ea37-45f4-4cdc-b322-7ddafc54bc75/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFILLXMMHD/fastqc_report.html", "overall_quality_status": "PASS", "display_title": "QualityMetricFastqc from 2018-11-15", "Sequence length": "50", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"dbxrefs": ["SRA:SRR5939567"], "display_title": "4DNFI65VHE77.fastq.gz", "file_type_detailed": "reads (fastq)", "href": "/files-fastq/4DNFI65VHE77/@@download/4DNFI65VHE77.fastq.gz", "status": "released", "uuid": "015c0bae-1fd7-4ad5-bc56-b3a6920716c8", "@type": ["FileFastq", "File", "Item"], "paired_end": "2", "@id": "/files-fastq/4DNFI65VHE77/", "file_classification": "raw file", "accession": "4DNFI65VHE77", "file_size": 184123623, "upload_key": "015c0bae-1fd7-4ad5-bc56-b3a6920716c8/4DNFI65VHE77.fastq.gz", "file_type": "reads", "external_references": [{"ref": "SRA:SRR5939567", "uri": "https://www.ncbi.nlm.nih.gov/sra/?term=SRR5939567"}], "related_files": [{"relationship_type": "paired with", "file": {"uuid": "e6e20a0a-e18d-4b2f-95e2-f1221d024d42", "@id": "/files-fastq/4DNFILLXMMHD/", "file_type_detailed": "reads (fastq)", "accession": "4DNFILLXMMHD", "paired_end": "1", "display_title": "4DNFILLXMMHD.fastq.gz", "file_type": "reads", "status": "released", "@type": ["FileFastq", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"display_title": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "status": "released", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric": {"@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4000000, "status": "released", "uuid": "30c8bc84-8ade-4dd8-aab0-9158cf25eb04", "@id": "/quality-metrics-fastqc/30c8bc84-8ade-4dd8-aab0-9158cf25eb04/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI65VHE77/fastqc_report.html", "overall_quality_status": "PASS", "display_title": "QualityMetricFastqc from 2018-11-19", "Sequence length": "50", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"dbxrefs": ["SRA:SRR5939568"], "display_title": "4DNFIQLM2LFY.fastq.gz", "file_type_detailed": "reads (fastq)", "href": "/files-fastq/4DNFIQLM2LFY/@@download/4DNFIQLM2LFY.fastq.gz", "status": "released", "uuid": "b3689c91-ea81-4279-b825-9dadf557f68c", "@type": ["FileFastq", "File", "Item"], "paired_end": "1", "@id": "/files-fastq/4DNFIQLM2LFY/", "file_classification": "raw file", "accession": "4DNFIQLM2LFY", "file_size": 187630094, "upload_key": "b3689c91-ea81-4279-b825-9dadf557f68c/4DNFIQLM2LFY.fastq.gz", "file_type": "reads", "external_references": [{"ref": "SRA:SRR5939568", "uri": "https://www.ncbi.nlm.nih.gov/sra/?term=SRR5939568"}], "related_files": [{"relationship_type": "paired with", "file": {"uuid": "3e9350b9-6b2d-406b-ae4e-05e7a3a88fd3", "@id": "/files-fastq/4DNFIFFXJ94G/", "file_type_detailed": "reads (fastq)", "accession": "4DNFIFFXJ94G", "paired_end": "2", "display_title": "4DNFIFFXJ94G.fastq.gz", "file_type": "reads", "status": "released", "@type": ["FileFastq", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"display_title": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "status": "released", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric": {"@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4000000, "status": "released", "uuid": "4556a4c8-2129-4629-918b-2eeb5e5fb4ed", "@id": "/quality-metrics-fastqc/4556a4c8-2129-4629-918b-2eeb5e5fb4ed/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIQLM2LFY/fastqc_report.html", "overall_quality_status": "PASS", "display_title": "QualityMetricFastqc from 2018-11-19", "Sequence length": "50", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"dbxrefs": ["SRA:SRR5939568"], "display_title": "4DNFIFFXJ94G.fastq.gz", "file_type_detailed": "reads (fastq)", "href": "/files-fastq/4DNFIFFXJ94G/@@download/4DNFIFFXJ94G.fastq.gz", "status": "released", "uuid": "3e9350b9-6b2d-406b-ae4e-05e7a3a88fd3", "@type": ["FileFastq", "File", "Item"], "paired_end": "2", "@id": "/files-fastq/4DNFIFFXJ94G/", "file_classification": "raw file", "accession": "4DNFIFFXJ94G", "file_size": 181964390, "upload_key": "3e9350b9-6b2d-406b-ae4e-05e7a3a88fd3/4DNFIFFXJ94G.fastq.gz", "file_type": "reads", "external_references": [{"ref": "SRA:SRR5939568", "uri": "https://www.ncbi.nlm.nih.gov/sra/?term=SRR5939568"}], "related_files": [{"relationship_type": "paired with", "file": {"uuid": "b3689c91-ea81-4279-b825-9dadf557f68c", "@id": "/files-fastq/4DNFIQLM2LFY/", "file_type_detailed": "reads (fastq)", "accession": "4DNFIQLM2LFY", "paired_end": "1", "display_title": "4DNFIQLM2LFY.fastq.gz", "file_type": "reads", "status": "released", "@type": ["FileFastq", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"display_title": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "status": "released", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric": {"@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4000000, "status": "released", "uuid": "409d5263-9d8b-463d-a1fc-860b4ed50060", "@id": "/quality-metrics-fastqc/409d5263-9d8b-463d-a1fc-860b4ed50060/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIFFXJ94G/fastqc_report.html", "overall_quality_status": "PASS", "display_title": "QualityMetricFastqc from 2018-11-19", "Sequence length": "50", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"dbxrefs": ["SRA:SRR5939566"], "display_title": "4DNFIA1HJ7KT.fastq.gz", "file_type_detailed": "reads (fastq)", "href": "/files-fastq/4DNFIA1HJ7KT/@@download/4DNFIA1HJ7KT.fastq.gz", "status": "released", "uuid": "4ae7178a-1880-4a7c-b609-66ec03857e9a", "@type": ["FileFastq", "File", "Item"], "paired_end": "1", "@id": "/files-fastq/4DNFIA1HJ7KT/", "file_classification": "raw file", "accession": "4DNFIA1HJ7KT", "file_size": 198047718, "upload_key": "4ae7178a-1880-4a7c-b609-66ec03857e9a/4DNFIA1HJ7KT.fastq.gz", "file_type": "reads", "external_references": [{"ref": "SRA:SRR5939566", "uri": "https://www.ncbi.nlm.nih.gov/sra/?term=SRR5939566"}], "related_files": [{"relationship_type": "paired with", "file": {"uuid": "7a55debf-5416-48e4-9fc9-108dfbd1d52a", "@id": "/files-fastq/4DNFIYI8ARZ7/", "file_type_detailed": "reads (fastq)", "accession": "4DNFIYI8ARZ7", "paired_end": "2", "display_title": "4DNFIYI8ARZ7.fastq.gz", "file_type": "reads", "status": "released", "@type": ["FileFastq", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"display_title": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "status": "released", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric": {"@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4000000, "status": "released", "uuid": "0b6739c3-8135-4872-8137-661965e54b96", "@id": "/quality-metrics-fastqc/0b6739c3-8135-4872-8137-661965e54b96/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIA1HJ7KT/fastqc_report.html", "overall_quality_status": "PASS", "display_title": "QualityMetricFastqc from 2018-11-15", "Sequence length": "50", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"dbxrefs": ["SRA:SRR5939566"], "display_title": "4DNFIYI8ARZ7.fastq.gz", "file_type_detailed": "reads (fastq)", "href": "/files-fastq/4DNFIYI8ARZ7/@@download/4DNFIYI8ARZ7.fastq.gz", "status": "released", "uuid": "7a55debf-5416-48e4-9fc9-108dfbd1d52a", "@type": ["FileFastq", "File", "Item"], "paired_end": "2", "@id": "/files-fastq/4DNFIYI8ARZ7/", "file_classification": "raw file", "accession": "4DNFIYI8ARZ7", "file_size": 193264206, "upload_key": "7a55debf-5416-48e4-9fc9-108dfbd1d52a/4DNFIYI8ARZ7.fastq.gz", "file_type": "reads", "external_references": [{"ref": "SRA:SRR5939566", "uri": "https://www.ncbi.nlm.nih.gov/sra/?term=SRR5939566"}], "related_files": [{"relationship_type": "paired with", "file": {"uuid": "4ae7178a-1880-4a7c-b609-66ec03857e9a", "@id": "/files-fastq/4DNFIA1HJ7KT/", "file_type_detailed": "reads (fastq)", "accession": "4DNFIA1HJ7KT", "paired_end": "1", "display_title": "4DNFIA1HJ7KT.fastq.gz", "file_type": "reads", "status": "released", "@type": ["FileFastq", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"display_title": "fastq", "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "fastq", "status": "released", "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric": {"@type": ["QualityMetricFastqc", "QualityMetric", "Item"], "Total Sequences": 4000000, "status": "released", "uuid": "8ff51eb6-cca8-4c73-a28f-f19210d7298a", "@id": "/quality-metrics-fastqc/8ff51eb6-cca8-4c73-a28f-f19210d7298a/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIYI8ARZ7/fastqc_report.html", "overall_quality_status": "PASS", "display_title": "QualityMetricFastqc from 2018-11-15", "Sequence length": "50", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "status": "released", "aliases": ["4dn-dcic-lab:GSM2745866"], "dbxrefs": ["GEO:GSM2745866"], "protocol": {"status": "released", "display_title": "GSE102740_hic_protocol.pdf", "uuid": "e89ce7e7-92ba-4af4-b910-74b269c0e845", "@type": ["Protocol", "Item"], "@id": "/protocols/e89ce7e7-92ba-4af4-b910-74b269c0e845/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "accession": "4DNEX8T4SM7Q", "biosample": {"biosource_summary": "DT40 with random integration of GFP and AID-tagged SMC2 gene, random integration of X. laevis Cdk1, CDK1 disruption, random integration of SMC2 gene, SMC2 gene deletion", "biosample_type": "immortalized cells", "display_title": "4DNBSFHFOMYW", "modifications_summary": "None", "uuid": "97b5ce2e-ca26-4c8b-ab68-33f58ea8449e", "treatments_summary": "1NM-PP1 treatment (2.0 \u03bcM, 13.0h) and Auxin treatment (125 \u03bcM)", "status": "released", "@type": ["Biosample", "Item"], "accession": "4DNBSFHFOMYW", "@id": "/biosamples/4DNBSFHFOMYW/", "biosource": [{"lab": {"uuid": "3c577664-affb-41c4-bf27-9e21c2fc1554", "status": "current", "display_title": "Job Dekker, UMMS", "@id": "/labs/job-dekker-lab/", "@type": ["Lab", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.3c577664-affb-41c4-bf27-9e21c2fc1554"]}}, "award": {"status": "current", "@type": ["Award", "Item"], "display_title": "EXTERNAL AWARD", "uuid": "12a92962-8265-4fc0-b2f8-cf14f05db58b", "@id": "/awards/external-award/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "status": "released", "tissue": {"display_title": "bursa of Fabricius", "uuid": "1bfd1088-3311-4711-8c41-83dbed3db972", "term_id": "UBERON:0003903", "slim_terms": [{"status": "released", "@type": ["OntologyTerm", "Item"], "display_title": "digestive system", "uuid": "111129bc-8535-4448-903e-854af460a233", "@id": "/ontology-terms/UBERON:0001007/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"status": "released", "@type": ["OntologyTerm", "Item"], "display_title": "mesoderm", "uuid": "111120bc-8535-4448-903e-854af460a233", "@id": "/ontology-terms/UBERON:0000926/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "@id": "/ontology-terms/UBERON:0003903/", "status": "released", "term_name": "bursa of Fabricius", "@type": ["OntologyTerm", "Item"], "preferred_name": "bursa of Fabricius", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "aliases": ["4dn-dcic-lab:DT40-SMC2-AID-GFP-Cdk1as"], "accession": "4DNSR3WXVNWC", "cell_line": {"@type": ["OntologyTerm", "Item"], "term_id": "EFO:0006274", "display_title": "DT40", "term_name": "DT40", "uuid": "fd057734-0765-4007-b7eb-d71ac7cbef65", "@id": "/ontology-terms/EFO:0006274/", "slim_terms": [{"status": "current", "@id": "/ontology-terms/GO:0005623/", "@type": ["OntologyTerm", "Item"], "display_title": "cell", "uuid": "72e16a19-eef3-46ca-a1b8-20e646e69675", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"status": "released", "@id": "/ontology-terms/CL:0000000/", "@type": ["OntologyTerm", "Item"], "display_title": "cell", "uuid": "45d2b02e-130b-40db-8bf2-2288c6c57dcf", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "status": "released", "preferred_name": "DT40", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "individual": {"@type": ["IndividualChicken", "Individual", "Item"], "uuid": "836856fd-a0f7-4daf-afb2-4a098df8e8fc", "@id": "/individuals-chicken/4DNINYWTTO3D/", "status": "released", "display_title": "4DNINYWTTO3D", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "description": "SMC2-AID expressing chicken cell line, expressing Cdk1as, a mutant sensitive to inhibition by 1NM-PP2", "date_created": "2018-10-30T15:04:13.816632+00:00", "submitted_by": {"error": "no view permissions"}, "last_modified": {"modified_by": {"error": "no view permissions"}, "date_modified": "2019-10-11T22:24:13.651645+00:00"}, "modifications": [{"status": "released", "display_title": "random integration of GFP and AID-tagged SMC2 gene", "@type": ["Modification", "Item"], "@id": "/modifications/ac4c579a-2e35-495d-98be-4cd1d925f004/", "uuid": "ac4c579a-2e35-495d-98be-4cd1d925f004", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"status": "released", "display_title": "random integration of X. laevis Cdk1", "@type": ["Modification", "Item"], "@id": "/modifications/4dca1ddb-ab74-44f5-ac84-738b0198886d/", "uuid": "4dca1ddb-ab74-44f5-ac84-738b0198886d", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"status": "released", "display_title": "Crispr disruption for CDK1 chicken gene", "@type": ["Modification", "Item"], "@id": "/modifications/fb27fdf6-4199-4179-8bb0-6101b1404aee/", "uuid": "fb27fdf6-4199-4179-8bb0-6101b1404aee", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"status": "released", "display_title": "random integration of SMC2 gene", "@type": ["Modification", "Item"], "@id": "/modifications/893eef07-449c-4887-a61e-d29d67f4ab96/", "uuid": "893eef07-449c-4887-a61e-d29d67f4ab96", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"status": "released", "display_title": "SMC2 gene deletion", "@type": ["Modification", "Item"], "@id": "/modifications/1cfc32df-0464-49ee-93e3-3d77af0581c2/", "uuid": "1cfc32df-0464-49ee-93e3-3d77af0581c2", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "biosource_type": "immortalized cell line", "cell_line_tier": "Unclassified", "public_release": "2019-10-11", "schema_version": "2", "project_release": "2019-10-11", "@id": "/biosources/4DNSR3WXVNWC/", "@type": ["Biosource", "Item"], "uuid": "ef807f51-66c2-47d2-b5bb-a2c39f3bf430", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "display_title": "DT40 with random integration of GFP and AID-tagged SMC2 gene, random integration of X. laevis Cdk1, CDK1 disruption, random integration of SMC2 gene, SMC2 gene deletion - 4DNSR3WXVNWC", "external_references": [], "biosource_name": "DT40 with random integration of GFP and AID-tagged SMC2 gene, random integration of X. laevis Cdk1, CDK1 disruption, random integration of SMC2 gene, SMC2 gene deletion", "biosource_category": ["Other"], "organism": {"display_title": "G. gallus", "@type": ["Organism", "Item"], "status": "released", "name": "chicken", "uuid": "fed8c206-762f-497f-821b-1c8ff7900bd2", "@id": "/organisms/9031/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "treatments": [{"duration": 13.0, "treatment_type": "Chemical", "concentration": 2.0, "@type": ["TreatmentAgent", "Treatment", "Item"], "display_title": "1NM-PP1 treatment (2.0 \u03bcM, 13.0h)", "concentration_units": "\u03bcM", "status": "released", "chemical": "1NM-PP1", "duration_units": "hour", "description": "Synchronization with 1NM-PP1 fo 13 hours", "uuid": "697bc0a7-d8d3-4991-8e88-fa4953ad8abd", "@id": "/treatments-agent/697bc0a7-d8d3-4991-8e88-fa4953ad8abd/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"treatment_type": "Chemical", "concentration": 125, "@type": ["TreatmentAgent", "Treatment", "Item"], "display_title": "Auxin treatment (125 \u03bcM)", "concentration_units": "\u03bcM", "status": "released", "chemical": "Auxin", "description": "Auxin treatment to induce degradation of auxin-inducible degron (AID) tagged protein", "uuid": "75df7ccb-dd0e-4c45-bc39-2b094108fadd", "@id": "/treatments-agent/75df7ccb-dd0e-4c45-bc39-2b094108fadd/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "badges": [{"messages": ["Biosample missing Cell Culture Details"], "badge": {"title": "Biosample Metadata Incomplete", "display_title": "Biosample Metadata Incomplete", "status": "released", "description": "Biosample is missing metadata information required as part of the standards implemented by the 4DN Samples working group.", "badge_classification": "Warning", "@id": "/badges/biosample-metadata-incomplete/", "badge_icon": "/static/img/badges/biosample-icon.svg", "uuid": "2b2cc7ff-b7a8-4138-9a6c-22884fc71690", "@type": ["Badge", "Item"], "warning": "Biosample Metadata Incomplete", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "description": "20150814-10m-R2", "sop_mapping": {"has_sop": "No"}, "date_created": "2018-10-30T15:05:27.158267+00:00", "submitted_by": {"error": "no view permissions"}, "last_modified": {"modified_by": {"error": "no view permissions"}, "date_modified": "2019-10-11T20:55:00.471422+00:00"}, "ligation_time": 240.0, "biotin_removed": "Yes", "digestion_time": 960.0, "public_release": "2019-10-11", "schema_version": "2", "tagging_method": "biotin-dCTP", "experiment_type": {"title": "Dilution Hi-C", "status": "released", "assay_subclass_short": "Hi-C", "display_title": "Dilution Hi-C", "experiment_category": "Sequencing", "uuid": "832b7989-69ab-4bb6-97b9-195d5dd965ea", "@type": ["ExperimentType", "Item"], "@id": "/experiment-types/dilution-hi-c/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "processed_files": [{"file_type_detailed": "alignments (bam)", "@id": "/files-processed/4DNFIFDTJSX5/", "file_size": 19945103407, "display_title": "4DNFIFDTJSX5.bam", "accession": "4DNFIFDTJSX5", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "display_title": "bam", "@type": ["FileFormat", "Item"], "@id": "/file-formats/bam/", "status": "released", "file_format": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "status": "released", "upload_key": "60b5060b-4e9e-4524-84f0-013d9df63970/4DNFIFDTJSX5.bam", "href": "/files-processed/4DNFIFDTJSX5/@@download/4DNFIFDTJSX5.bam", "file_type": "alignments", "@type": ["FileProcessed", "File", "Item"], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/60b5060b-4e9e-4524-84f0-013d9df63970/4DNFIFDTJSX5.bam", "file_classification": "processed file", "uuid": "60b5060b-4e9e-4524-84f0-013d9df63970", "quality_metric": {"@id": "/quality-metrics-bamqc/8e1fc956-c606-467a-8df4-6e90602195db/", "overall_quality_status": "PASS", "uuid": "8e1fc956-c606-467a-8df4-6e90602195db", "status": "released", "@type": ["QualityMetricBamqc", "QualityMetric", "Item"], "display_title": "QualityMetricBamqc from 2020-01-16", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric_summary": [{"title": "Total Reads", "value": "177771715", "numberType": "integer"}, {"title": "Unmapped Reads", "value": "19.77", "tooltip": "Percent of total reads (=35.15m)", "numberType": "percent"}, {"title": "Multimapped Reads", "value": "9.193", "tooltip": "Percent of total reads (=16.34m)", "numberType": "percent"}, {"title": "Duplicate Reads", "value": "18.94", "tooltip": "Percent of total reads (=33.67m)", "numberType": "percent"}, {"title": "Walks", "value": "0.002", "tooltip": "Percent of total reads (=0.0m)", "numberType": "percent"}, {"title": "Minor Contigs", "value": "0.281", "tooltip": "Percent of total reads (=0.5m)", "numberType": "percent"}]}, "external_references": [], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Job Dekker, UMMS", "experiment_type": "Dilution Hi-C", "experiment_bucket": "processed file", "assay_info": "HindIII", "dataset": "HiC on unsorted sync. SMC2-AID chicken cells", "condition": "prophase (10m), SMC2-", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "DT40 with random integration of GFP and AID-tagged SMC2 gene, random integration of X. laevis Cdk1, CDK1 disruption, random integration of SMC2 gene, SMC2 gene deletion", "lab_name": "4DN DCIC, HMS"}}, {"file_type_detailed": "contact list-replicate (pairs)", "@id": "/files-processed/4DNFIEHRBC4K/", "file_size": 1706444652, "display_title": "4DNFIEHRBC4K.pairs.gz", "accession": "4DNFIEHRBC4K", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b2c", "display_title": "pairs", "@type": ["FileFormat", "Item"], "@id": "/file-formats/pairs/", "status": "released", "file_format": "pairs", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "status": "released", "upload_key": "a9f12bdd-ef93-4afd-b227-2192ac8f731d/4DNFIEHRBC4K.pairs.gz", "href": "/files-processed/4DNFIEHRBC4K/@@download/4DNFIEHRBC4K.pairs.gz", "file_type": "contact list-replicate", "@type": ["FileProcessed", "File", "Item"], "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/a9f12bdd-ef93-4afd-b227-2192ac8f731d/4DNFIEHRBC4K.pairs.gz", "file_classification": "processed file", "uuid": "a9f12bdd-ef93-4afd-b227-2192ac8f731d", "quality_metric": {"@id": "/quality-metrics-pairsqc/69667ae1-dd4e-48ec-aad5-9dfb88c8636b/", "overall_quality_status": "PASS", "uuid": "69667ae1-dd4e-48ec-aad5-9dfb88c8636b", "status": "released", "@type": ["QualityMetricPairsqc", "QualityMetric", "Item"], "Total reads": 92610417, "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIEHRBC4K/pairsqc_report.html", "display_title": "QualityMetricPairsqc from 2019-02-11", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric_summary": [{"title": "Filtered Reads", "value": "92610417", "numberType": "integer"}, {"title": "Cis reads (>20kb)", "value": "26.723", "tooltip": "Percent of filtered reads (=24.75m)", "numberType": "percent"}, {"title": "Short cis reads", "value": "31.918", "tooltip": "Percent of filtered reads (=29.56m)", "numberType": "percent"}, {"title": "Trans Reads", "value": "41.359", "tooltip": "Percent of filtered reads (=38.3m)", "numberType": "percent"}]}, "external_references": [], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "track_and_facet_info": {"experimental_lab": "Job Dekker, UMMS", "experiment_type": "Dilution Hi-C", "experiment_bucket": "processed file", "assay_info": "HindIII", "dataset": "HiC on unsorted sync. SMC2-AID chicken cells", "condition": "prophase (10m), SMC2-", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "DT40 with random integration of GFP and AID-tagged SMC2 gene, random integration of X. laevis Cdk1, CDK1 disruption, random integration of SMC2 gene, SMC2 gene deletion", "lab_name": "4DN DCIC, HMS"}}], "project_release": "2019-10-11", "digestion_enzyme": {"@id": "/enzymes/HindIII/", "status": "released", "uuid": "2ace2f00-c913-4bac-a6ef-0b316bc2108e", "name": "HindIII", "display_title": "HindIII", "@type": ["Enzyme", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "crosslinking_time": 10.0, "biosample_quantity": 12000000.0, "crosslinking_method": "1% Formaldehyde", "fragment_size_range": "150-350", "fragmentation_method": "sonication", "ligation_temperature": 16.0, "digestion_temperature": 37.0, "biosample_quantity_units": "cells", "crosslinking_temperature": 23.0, "library_preparation_date": "2015-08-14", "fragment_size_selection_method": "SPRI beads", "@id": "/experiments-hi-c/4DNEX8T4SM7Q/", "@type": ["ExperimentHiC", "Experiment", "Item"], "uuid": "6288b9c6-775a-4e4c-bf69-cff76b63dfc4", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "display_title": "Dilution Hi-C on DT40 with random integration of GFP and AID-tagged SMC2 gene, random integration of X. laevis Cdk1, CDK1 disruption, random integration of SMC2 gene, SMC2 gene deletion with HindIII - 4DNEX8T4SM7Q", "external_references": [{"ref": "GEO:GSM2745866", "uri": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM2745866"}], "experiment_sets": [{"accession": "4DNES5GUEFXM", "@id": "/experiment-set-replicates/4DNES5GUEFXM/", "experimentset_type": "replicate", "@type": ["ExperimentSetReplicate", "ExperimentSet", "Item"], "status": "released", "uuid": "bbead23a-a92f-4803-b404-b9ae7f78e0fd", "display_title": "4DNES5GUEFXM", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "produced_in_pub": {"display_title": "Gibcus JH et al. (2018) PMID:29348367", "@id": "/publications/84fa5633-aac7-4cb3-b53b-0f0234ea06dd/", "status": "current", "uuid": "84fa5633-aac7-4cb3-b53b-0f0234ea06dd", "journal": "Science (New York, N.Y.)", "abstract": "Mitotic chromosomes fold as compact arrays of chromatin loops. To identify the pathway of mitotic chromosome formation, we combined imaging and Hi-C analysis of synchronous DT40 cell cultures with polymer simulations. Here we show that in prophase, the interphase organization is rapidly lost in a condensin-dependent manner, and arrays of consecutive 60-kilobase (kb) loops are formed. During prometaphase, ~80-kb inner loops are nested within ~400-kb outer loops. The loop  array acquires a helical arrangement with consecutive loops emanating from a central \"spiral staircase\" condensin scaffold. The size of helical turns progressively increases to ~12 megabases during prometaphase. Acute depletion of  condensin I or II shows that nested loops form by differential action of the two  condensins, whereas condensin II is required for helical winding.", "short_attribution": "Gibcus JH et al. (2018)", "ID": "PMID:29348367", "date_published": "2018-02-09", "authors": ["Gibcus JH", "Samejima K", "Goloborodko A", "Samejima I", "Naumova N", "Nuebler J", "Kanemaki MT", "Xie L", "Paulson JR", "Earnshaw WC", "Mirny LA", "Dekker J"], "title": "A pathway for mitotic chromosome formation.", "@type": ["Publication", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "publications_of_exp": [{"uuid": "84fa5633-aac7-4cb3-b53b-0f0234ea06dd", "@id": "/publications/84fa5633-aac7-4cb3-b53b-0f0234ea06dd/", "ID": "PMID:29348367", "display_title": "Gibcus JH et al. (2018) PMID:29348367", "journal": "Science (New York, N.Y.)", "@type": ["Publication", "Item"], "short_attribution": "Gibcus JH et al. (2018)", "date_published": "2018-02-09", "title": "A pathway for mitotic chromosome formation.", "abstract": "Mitotic chromosomes fold as compact arrays of chromatin loops. To identify the pathway of mitotic chromosome formation, we combined imaging and Hi-C analysis of synchronous DT40 cell cultures with polymer simulations. Here we show that in prophase, the interphase organization is rapidly lost in a condensin-dependent manner, and arrays of consecutive 60-kilobase (kb) loops are formed. During prometaphase, ~80-kb inner loops are nested within ~400-kb outer loops. The loop  array acquires a helical arrangement with consecutive loops emanating from a central \"spiral staircase\" condensin scaffold. The size of helical turns progressively increases to ~12 megabases during prometaphase. Acute depletion of  condensin I or II shows that nested loops form by differential action of the two  condensins, whereas condensin II is required for helical winding.", "authors": ["Gibcus JH", "Samejima K", "Goloborodko A", "Samejima I", "Naumova N", "Nuebler J", "Kanemaki MT", "Xie L", "Paulson JR", "Earnshaw WC", "Mirny LA", "Dekker J"], "status": "current", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "experiment_categorizer": {"field": "Enzyme", "value": "HindIII", "combined": "Enzyme: HindIII"}, "experiment_summary": "Dilution Hi-C on DT40 with random integration of GFP and AID-tagged SMC2 gene, random integration of X. laevis Cdk1, CDK1 disruption, random integration of SMC2 gene, SMC2 gene deletion with HindIII", "@context": "/terms/", "aggregated-items": {"badges": [{"parent": "/biosamples/4DNBSFHFOMYW/", "embedded_path": "biosample.badges", "item": {"messages": ["Biosample missing Cell Culture Details"], "badge": {"commendation": null, "warning": "Biosample Metadata Incomplete", "uuid": "2b2cc7ff-b7a8-4138-9a6c-22884fc71690", "@id": "/badges/biosample-metadata-incomplete/", "badge_icon": "/static/img/badges/biosample-icon.svg", "description": "Biosample is missing metadata information required as part of the standards implemented by the 4DN Samples working group."}}}]}, "validation-errors": []}