ExperimentHiC in situ Hi-C on K562 (Tier 2) with HindIII

in situ Hi-C4DNEXIR22VYP
released
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Nuclei were purify from K562 cells , and then incubated in 1XNEB3.1 buffer at 37C for 240mins before using Hi-C 2.0 HindIII enzyme for digestion.

   June 4th, 2019 at 2:11pm

Properties  

Experiment Type 
in situ Hi-C
Follows SOP 
No
Biosample 
4DNBS442CMMA
Digestion Enzyme 
HindIII
Biosample Modifications 
None
Biosample Treatments 
None
Biosample Biosource 
K562 (Tier 2) - 4DNSRWQFKJYO

2 Processed Files

Experiment
File
File Type
File Size
Experiment
4DNEXIR22VYP
in situ Hi-C on K562 (Tier 2) with HindIII
File
4DNFI751Y3QE
alignments (bam)
20.5 GB
File
4DNFI55PKDYG
contact list-replicate (pairs)
1.94 GB

Quality Metrics

Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXIR22VYP
in situ Hi-C on K562 (Tier 2) with HindIII
File
Alignments (bam)
4DNFI751Y3QE
173.98m
13.562%
14.969%
9.598%
0.01%
0.118%
Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Details
Experiment
4DNEXIR22VYP
in situ Hi-C on K562 (Tier 2) with HindIII
File
Contact List-replicate (pairs)
4DNFI55PKDYG
107.62m
44.953%
23.25%
31.797%