{"lab": {"status": "current", "@type": ["Lab", "Item"], "@id": "/labs/4dn-dcic-lab/", "uuid": "828cd4fe-ebb0-4b36-a94a-d2e3a36cc989", "display_title": "4DN DCIC, HMS", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.828cd4fe-ebb0-4b36-a94a-d2e3a36cc989"]}}, "url": "http://maq.sourceforge.net/fastq.shtml", "award": {"status": "current", "uuid": "b0b9c607-f8b4-4f02-93f4-9895b461334b", "@type": ["Award", "Item"], "display_title": "4D NUCLEOME NETWORK DATA COORDINATION AND INTEGRATION CENTER - PHASE I", "@id": "/awards/1U01CA200059-01/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "status": "released", "assay_types": ["Sequencing"], "description": "Fastq files are the most common type of raw files from sequencing instruments. Some sequencers, specifically some Nanopore sequencers, use fast5 as a raw format, but these will be converted to fastq before submission to the 4DN data portal. Each read in a fastq file contains a read id or header, the sequence, a line containing '+' and then a per-base quality score. On the 4DN data portal, fastq files are generally unfiltered and unclipped/untrimmed. ", "file_format": "fastq", "date_created": "2018-09-18T02:52:38.192920+00:00", "file_content": "reads", "submitted_by": {"error": "no view permissions"}, "last_modified": {"modified_by": {"error": "no view permissions"}, "date_modified": "2020-11-02T15:59:50.507461+00:00"}, "schema_version": "1", "valid_item_types": ["FileFastq", "FileProcessed"], "standard_file_extension": "fastq.gz", "other_allowed_extensions": ["fq.gz"], "@id": "/file-formats/fastq/", "@type": ["FileFormat", "Item"], "uuid": "c13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "display_title": "fastq", "external_references": [], "@context": "/terms/", "aggregated-items": {}, "validation-errors": []}