{"lab": {"@type": ["Lab", "Item"], "uuid": "8c95312f-afa0-49ee-9d3c-e30849c74e50", "status": "current", "@id": "/labs/wei-xie-lab/", "title": "Wei Xie, TSINGHUA", "display_title": "Wei Xie, TSINGHUA", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.8c95312f-afa0-49ee-9d3c-e30849c74e50"]}}, "award": {"project": "External", "description": "Funding source is from outside 4DN.", "uuid": "12a92962-8265-4fc0-b2f8-cf14f05db58b", "display_title": "EXTERNAL AWARD", "name": "external-award", "center": "External", "status": "current", "@type": ["Award", "Item"], "center_title": "External", "@id": "/awards/external-award/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "md5sum": "685040a4697633c63a7f491b83f869c5", "status": "released", "accession": "4DNFI3JD3XNX", "file_size": 1173653713, "file_type": "contact list-replicate", "description": "This is an output file of the Hi-C processing pipeline", "extra_files": [{"href": "/files-processed/4DNFI3JD3XNX/@@download/4DNFI3JD3XNX.pairs.gz.px2", "uuid": "580703fb-8935-4b0b-8a48-f0831f1f5de1", "md5sum": "16cd26a48b3fab7d1e85c5e1454777ff", "status": "released", "filename": "4DNFI3JD3XNX", "accession": "4DNFI3JD3XNX", "file_size": 16905933, "upload_key": "580703fb-8935-4b0b-8a48-f0831f1f5de1/4DNFI3JD3XNX.pairs.gz.px2", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226348b2c", "@type": ["FileFormat", "Item"], "@id": "/file-formats/pairs_px2/", "display_title": "pairs_px2", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"file_format": "pairs", "@id": "/file-formats/pairs/", "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b2c", "display_title": "pairs", "@type": ["FileFormat", "Item"], "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "date_created": "2020-01-24T08:01:20.767305+00:00", "submitted_by": {"error": "no view permissions"}, "last_modified": {"modified_by": {"error": "no view permissions"}, "date_modified": "2021-04-06T20:18:59.567227+00:00"}, "public_release": "2020-02-07", "quality_metric": {"uuid": "1df74917-d450-400a-ac1d-6a7c3df482cd", "status": "released", "display_title": "QualityMetricPairsqc from 2020-01-25", "Cis reads (>20kb)": 27975222, "Trans reads": 10275818, "@id": "/quality-metrics-pairsqc/1df74917-d450-400a-ac1d-6a7c3df482cd/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI3JD3XNX/pairsqc_report.html", "@type": ["QualityMetricPairsqc", "QualityMetric", "Item"], "Total reads": 55615317, "Short cis reads (<20kb)": 17364277, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric_summary": [{"title": "Filtered Reads", "value": "55615317", "numberType": "integer"}, {"title": "Cis reads (>20kb)", "value": "50.301", "tooltip": "Percent of filtered reads (=27.98m)", "numberType": "percent"}, {"title": "Short cis reads", "value": "31.222", "tooltip": "Percent of filtered reads (=17.36m)", "numberType": "percent"}, {"title": "Trans Reads", "value": "18.477", "tooltip": "Percent of filtered reads (=10.28m)", "numberType": "percent"}]}, "schema_version": "3", "genome_assembly": "GRCm38", "project_release": "2020-02-07", "source_experiments": ["c20f8f65-01f6-48ce-b406-54b564c8fb61"], "file_classification": "processed file", "@id": "/files-processed/4DNFI3JD3XNX/", "@type": ["FileProcessed", "File", "Item"], "uuid": "580703fb-8935-4b0b-8a48-f0831f1f5de1", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "display_title": "4DNFI3JD3XNX.pairs.gz", "external_references": [], "experiments": [{"accession": "4DNEXXZOPUC2", "@id": "/experiments-hi-c/4DNEXXZOPUC2/", "@type": ["ExperimentHiC", "Experiment", "Item"], "uuid": "c20f8f65-01f6-48ce-b406-54b564c8fb61", "status": "released", "display_title": "in situ Hi-C on PN5 stage zygote with MboI - 4DNEXXZOPUC2", "experiment_sets": [{"experimentset_type": "replicate", "display_title": "4DNES1J8MC4Q", "accession": "4DNES1J8MC4Q", "status": "released", "uuid": "3a7a6bb8-2d32-4a92-8e29-77444f88da43", "@type": ["ExperimentSetReplicate", "ExperimentSet", "Item"], "@id": "/experiment-set-replicates/4DNES1J8MC4Q/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "biosample": {"accession": "4DNBSLO4EZ5U", "modifications_summary": "None", "@id": "/biosamples/4DNBSLO4EZ5U/", "status": "released", "uuid": "965a7d23-2cb0-4f1a-8cf9-93f90b97bcb2", "@type": ["Biosample", "Item"], "treatments_summary": "None", "biosource_summary": "PN5 stage zygote", "display_title": "4DNBSLO4EZ5U", "biosource": [{"cell_line_tier": "Unclassified", "biosource_type": "primary cell", "display_title": "PN5 stage zygote - 4DNSRAFSS6H3", "@type": ["Biosource", "Item"], "override_biosource_name": "PN5 stage zygote", "status": "released", "uuid": "7729de0a-b025-4ec1-b9a9-6ea27692bf72", "@id": "/biosources/4DNSRAFSS6H3/", "cell_line": {"@id": "/ontology-terms/CL:0000365/", "term_name": "animal zygote", "preferred_name": "animal zygote", "term_id": "CL:0000365", "@type": ["OntologyTerm", "Item"], "status": "released", "display_title": "animal zygote", "uuid": "083776ff-12aa-4a1e-bddd-bbd2a2c96362", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "organism": {"name": "mouse", "scientific_name": "Mus musculus", "@type": ["Organism", "Item"], "uuid": "3413218c-3d86-498b-a0a2-9a406638e786", "status": "released", "display_title": "M. musculus", "@id": "/organisms/10090/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "individual": {"@type": ["IndividualMouse", "Individual", "Item"], "display_title": "4DNINNKVDPKM", "status": "released", "uuid": "15556aef-771d-4338-9ed9-6cc0be87a0ea", "@id": "/individuals-mouse/4DNINNKVDPKM/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "digestion_enzyme": {"uuid": "d8da42d0-bc20-40e5-bacf-c263b8603e03", "@id": "/enzymes/MboI/", "@type": ["Enzyme", "Item"], "name": "MboI", "status": "released", "display_title": "MboI", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "experiment_type": {"uuid": "a2920a38-cdba-4ff0-b4f0-c6bb53257747", "@type": ["ExperimentType", "Item"], "@id": "/experiment-types/in-situ-hi-c/", "title": "in situ Hi-C", "status": "released", "display_title": "in situ Hi-C", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "last_modified": {"date_modified": "2024-07-19T12:45:17.439538+00:00"}}], "file_type_detailed": "contact list-replicate (pairs)", "track_and_facet_info": {"experimental_lab": "Wei Xie, TSINGHUA", "experiment_type": "in situ Hi-C", "experiment_bucket": "processed file", "assay_info": "MboI", "dataset": "sisHi-C during early embryonic development", "condition": "Zygotes in pronuclear stage 5", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "PN5 stage zygote", "lab_name": "Wei Xie, TSINGHUA"}, "title": "4DNFI3JD3XNX", "href": "/files-processed/4DNFI3JD3XNX/@@download/4DNFI3JD3XNX.pairs.gz", "upload_key": "580703fb-8935-4b0b-8a48-f0831f1f5de1/4DNFI3JD3XNX.pairs.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/580703fb-8935-4b0b-8a48-f0831f1f5de1/4DNFI3JD3XNX.pairs.gz", "tsv_notes": "", "workflow_run_inputs": [{"status": "released", "@id": "/workflow-runs-awsem/f9b344c7-3149-4345-a5dc-2d162334af1e/", "uuid": "f9b344c7-3149-4345-a5dc-2d162334af1e", "@type": ["WorkflowRunAwsem", "WorkflowRun", "Item"], "display_title": "hi-c-processing-pairs 0.2.7 run 2020-01-25 03:01:22.806456", "output_files": [{"workflow_argument_name": "merged_pairs", "value": {"display_title": "4DNFIZ59RT2J.pairs.gz", "status": "released", "@id": "/files-processed/4DNFIZ59RT2J/", "accession": "4DNFIZ59RT2J", "uuid": "a5b723f3-5999-4edd-a2a7-1242ea45fae4", "@type": ["FileProcessed", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "pairs", "@id": "/file-formats/pairs/", "status": "released", "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "pairs", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}, {"workflow_argument_name": "hic", "value": {"display_title": "4DNFI1EYIGOC.hic", "status": "released", "@id": "/files-processed/4DNFI1EYIGOC/", "accession": "4DNFI1EYIGOC", "uuid": "1181c0c4-afb7-4b6a-9fdc-d868fb2253fc", "@type": ["FileProcessed", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "hic", "@id": "/file-formats/hic/", "status": "released", "uuid": "d13d11cf-218e-4f61-bbf0-91f226248b2c", "file_format": "hic", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}, {"workflow_argument_name": "mcool", "value": {"display_title": "4DNFIDFYUWC3.mcool", "status": "released", "@id": "/files-processed/4DNFIDFYUWC3/", "accession": "4DNFIDFYUWC3", "uuid": "320a0ff5-c23d-4b30-ba82-bb2cf8fdf9c2", "@type": ["FileProcessed", "File", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"display_title": "mcool", "@id": "/file-formats/mcool/", "status": "released", "uuid": "d13d06cf-218e-4f61-ccf0-91f226248b2c", "file_format": "mcool", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "input_files": [{"workflow_argument_name": "chromsizes", "value": {"accession": "4DNFI3UBJ3HZ", "status": "released", "uuid": "bd0784a5-2a3d-42f0-ba9c-d9b3dc0539c6", "display_title": "4DNFI3UBJ3HZ.chrom.sizes", "filename": "mm10.mainonly.chrom.sizes", "@type": ["FileReference", "File", "Item"], "@id": "/files-reference/4DNFI3UBJ3HZ/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"file_format": "chromsizes", "uuid": "d13d06cf-218e-4f61-55f0-93f226248b2c", "@id": "/file-formats/chromsizes/", "status": "released", "@type": ["FileFormat", "Item"], "display_title": "chromsizes", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}, {"workflow_argument_name": "input_pairs", "value": {"accession": "4DNFI3JD3XNX", "status": "released", "uuid": "580703fb-8935-4b0b-8a48-f0831f1f5de1", "display_title": "4DNFI3JD3XNX.pairs.gz", "@type": ["FileProcessed", "File", "Item"], "@id": "/files-processed/4DNFI3JD3XNX/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"file_format": "pairs", "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/pairs/", "status": "released", "@type": ["FileFormat", "Item"], "display_title": "pairs", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}, {"workflow_argument_name": "input_pairs", "value": {"accession": "4DNFI4T1IM11", "status": "released", "uuid": "dac8c84a-f9f1-4d5d-bb07-39de9a85200e", "display_title": "4DNFI4T1IM11.pairs.gz", "@type": ["FileProcessed", "File", "Item"], "@id": "/files-processed/4DNFI4T1IM11/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"file_format": "pairs", "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/pairs/", "status": "released", "@type": ["FileFormat", "Item"], "display_title": "pairs", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}, {"workflow_argument_name": "input_pairs", "value": {"accession": "4DNFITQXLWSM", "status": "released", "uuid": "344a8411-5639-48a0-bf59-65367d6ed4f1", "display_title": "4DNFITQXLWSM.pairs.gz", "@type": ["FileProcessed", "File", "Item"], "@id": "/files-processed/4DNFITQXLWSM/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"file_format": "pairs", "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/pairs/", "status": "released", "@type": ["FileFormat", "Item"], "display_title": "pairs", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}, {"workflow_argument_name": "input_pairs", "value": {"accession": "4DNFIS45KZF6", "status": "released", "uuid": "4af3cbf7-1b83-4bdb-b8c0-8222e2a7e854", "display_title": "4DNFIS45KZF6.pairs.gz", "@type": ["FileProcessed", "File", "Item"], "@id": "/files-processed/4DNFIS45KZF6/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"file_format": "pairs", "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/pairs/", "status": "released", "@type": ["FileFormat", "Item"], "display_title": "pairs", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}, {"workflow_argument_name": "restriction_file", "value": {"accession": "4DNFIONK4G14", "status": "released", "uuid": "cb3c293b-b5fe-4f47-9373-a29399ea1edc", "display_title": "4DNFIONK4G14.txt", "filename": "mm10_MboI.txt", "@type": ["FileReference", "File", "Item"], "@id": "/files-reference/4DNFIONK4G14/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"file_format": "juicer_format_restriction_site_file", "uuid": "d13d06cf-218e-4f61-55f0-94f226248b2c", "@id": "/file-formats/juicer_format_restriction_site_file/", "status": "released", "@type": ["FileFormat", "Item"], "display_title": "juicer_format_restriction_site_file", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "workflow": {"status": "released", "@id": "/workflows/4DNWF2YBHXQM/", "uuid": "23bd6d73-4190-496d-837c-21bcdb3802ed", "display_title": "Generation of multiresolution Hi-C contact matrices from a set of contact lists 0.2.7 - 4DNWF2YBHXQM", "@type": ["Workflow", "Item"], "title": "Generation of multiresolution Hi-C contact matrices from a set of contact lists 0.2.7", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"status": "released", "@id": "/workflow-runs-awsem/1e6500d3-1c5e-427e-b724-b05722a17ce6/", "uuid": "1e6500d3-1c5e-427e-b724-b05722a17ce6", "@type": ["WorkflowRunAwsem", "WorkflowRun", "Item"], "display_title": "pairsqc-single 0.2.6 run 2020-01-25 03:01:22.063572", "output_files": [{"workflow_argument_name": "report", "value_qc": {"status": "released", "uuid": "1df74917-d450-400a-ac1d-6a7c3df482cd", "@type": ["QualityMetricPairsqc", "QualityMetric", "Item"], "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI3JD3XNX/pairsqc_report.html", "@id": "/quality-metrics-pairsqc/1df74917-d450-400a-ac1d-6a7c3df482cd/", "overall_quality_status": "PASS", "display_title": "QualityMetricPairsqc from 2020-01-25", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "input_files": [{"workflow_argument_name": "chromsizes", "value": {"accession": "4DNFI3UBJ3HZ", "status": "released", "uuid": "bd0784a5-2a3d-42f0-ba9c-d9b3dc0539c6", "display_title": "4DNFI3UBJ3HZ.chrom.sizes", "filename": "mm10.mainonly.chrom.sizes", "@type": ["FileReference", "File", "Item"], "@id": "/files-reference/4DNFI3UBJ3HZ/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"file_format": "chromsizes", "uuid": "d13d06cf-218e-4f61-55f0-93f226248b2c", "@id": "/file-formats/chromsizes/", "status": "released", "@type": ["FileFormat", "Item"], "display_title": "chromsizes", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}, {"workflow_argument_name": "input_pairs", "value": {"accession": "4DNFI3JD3XNX", "status": "released", "uuid": "580703fb-8935-4b0b-8a48-f0831f1f5de1", "display_title": "4DNFI3JD3XNX.pairs.gz", "@type": ["FileProcessed", "File", "Item"], "@id": "/files-processed/4DNFI3JD3XNX/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"file_format": "pairs", "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/pairs/", "status": "released", "@type": ["FileFormat", "Item"], "display_title": "pairs", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "workflow": {"status": "released", "@id": "/workflows/4DNWFHB26CID/", "uuid": "b8c533e0-f8c0-4510-b4a1-ac35158e27c3", "display_title": "PairsQC 0.2.6 - 4DNWFHB26CID", "@type": ["Workflow", "Item"], "title": "PairsQC 0.2.6", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "workflow_run_outputs": [{"@id": "/workflow-runs-awsem/96c44239-13a0-48b7-b22b-5dd4ec2ba938/", "display_title": "hi-c-processing-bam 0.2.6 run 2020-01-24 08:01:22.218687", "uuid": "96c44239-13a0-48b7-b22b-5dd4ec2ba938", "@type": ["WorkflowRunAwsem", "WorkflowRun", "Item"], "status": "released", "input_files": [{"workflow_argument_name": "chromsize", "value": {"status": "released", "@type": ["FileReference", "File", "Item"], "display_title": "4DNFI3UBJ3HZ.chrom.sizes", "filename": "mm10.mainonly.chrom.sizes", "@id": "/files-reference/4DNFI3UBJ3HZ/", "uuid": "bd0784a5-2a3d-42f0-ba9c-d9b3dc0539c6", "accession": "4DNFI3UBJ3HZ", "file_format": {"uuid": "d13d06cf-218e-4f61-55f0-93f226248b2c", "display_title": "chromsizes", "status": "released", "@id": "/file-formats/chromsizes/", "file_format": "chromsizes", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"status": "released", "@type": ["FileProcessed", "File", "Item"], "display_title": "4DNFICW9AG52.bam", "@id": "/files-processed/4DNFICW9AG52/", "uuid": "c2b75236-382b-46b8-bd95-33788ba4b33d", "accession": "4DNFICW9AG52", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "display_title": "bam", "status": "released", "@id": "/file-formats/bam/", "file_format": "bam", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"status": "released", "@type": ["FileProcessed", "File", "Item"], "display_title": "4DNFIAFI42RM.bam", "@id": "/files-processed/4DNFIAFI42RM/", "uuid": "564b5be3-9921-45e8-b7b9-2125482f443b", "accession": "4DNFIAFI42RM", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "display_title": "bam", "status": "released", "@id": "/file-formats/bam/", "file_format": "bam", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "output_files": [{"workflow_argument_name": "annotated_bam", "value": {"display_title": "4DNFIHRC63BD.bam", "uuid": "be82f6de-2b0f-49da-8190-81339f511dab", "accession": "4DNFIHRC63BD", "@type": ["FileProcessed", "File", "Item"], "status": "released", "@id": "/files-processed/4DNFIHRC63BD/", "file_format": {"file_format": "bam", "display_title": "bam", "@type": ["FileFormat", "Item"], "@id": "/file-formats/bam/", "status": "released", "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "filtered_pairs", "value": {"display_title": "4DNFI3JD3XNX.pairs.gz", "uuid": "580703fb-8935-4b0b-8a48-f0831f1f5de1", "accession": "4DNFI3JD3XNX", "@type": ["FileProcessed", "File", "Item"], "status": "released", "@id": "/files-processed/4DNFI3JD3XNX/", "file_format": {"file_format": "pairs", "display_title": "pairs", "@type": ["FileFormat", "Item"], "@id": "/file-formats/pairs/", "status": "released", "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "workflow": {"title": "Hi-C Post-alignment Processing 0.2.6", "status": "released", "@id": "/workflows/4DNWFT69RBY4/", "@type": ["Workflow", "Item"], "display_title": "Hi-C Post-alignment Processing 0.2.6 - 4DNWFT69RBY4", "uuid": "023bfb3e-9a8b-42b9-a9d4-216079526f68", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "experiment_sets": [], "pairsqc_table": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFI3JD3XNX/4DNFI3JD3XNX.plot_table.out", "source_experiment_sets": [{"display_title": "4DNES1J8MC4Q", "@id": "/experiment-set-replicates/4DNES1J8MC4Q/", "@type": ["ExperimentSetReplicate", "ExperimentSet", "Item"], "uuid": "3a7a6bb8-2d32-4a92-8e29-77444f88da43", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "@context": "/terms/", "aggregated-items": {"last_modified": [{"parent": "/experiments-hi-c/4DNEXXZOPUC2/", "embedded_path": "experiments.last_modified", "item": {"date_modified": "2024-07-19T12:45:17.439538+00:00"}}, {"parent": "/files-processed/4DNFI3JD3XNX/", "embedded_path": "last_modified", "item": {"date_modified": "2021-04-06T20:18:59.567227+00:00"}}]}, "validation-errors": []}