{"lab": {"uuid": "d111721a-0880-4795-a5d5-835e3c318769", "status": "current", "display_title": "Deplancke Lab", "@id": "/labs/bart-deplancke-lab/", "correspondence": [{"contact_email": "IGJhcnQuZGVwbGFuY2tlQGVwZmwuY2g=", "@id": "/users/a1a6b714-436a-4bb7-9f7b-4d9fe6cac9be/", "display_title": "Bart Deplancke"}], "title": "Deplancke Lab", "@type": ["Lab", "Item"], "pi": {"error": "no view permissions"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.d111721a-0880-4795-a5d5-835e3c318769"]}}, "award": {"@type": ["Award", "Item"], "name": "external-award", "description": "Funding source is from outside 4DN.", "@id": "/awards/external-award/", "center_title": "External", "project": "External", "center": "External", "uuid": "12a92962-8265-4fc0-b2f8-cf14f05db58b", "status": "current", "display_title": "EXTERNAL AWARD", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "md5sum": "4f00a280f33fee36b77b35ac3e85637b", "status": "released", "aliases": ["bart-deplancke-lab:exp_lcl_homozygous_B2_T1_trace"], "filename": "LCLA_B2_T1_trace.csv", "accession": "4DNFI8TFEFP1", "file_size": 35535, "file_type": "FOF-CT - trace data", "file_format": {"@id": "/file-formats/csv/", "display_title": "csv", "file_format": "csv", "uuid": "d13d06cf-218e-4f61-55f0-94f336118b2c", "status": "released", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "date_created": "2025-07-08T14:40:48.738629+00:00", "submitted_by": {"error": "no view permissions"}, "last_modified": {"modified_by": {"error": "no view permissions"}, "date_modified": "2025-09-05T17:18:46.173848+00:00"}, "content_md5sum": "4f00a280f33fee36b77b35ac3e85637b", "public_release": "2025-07-10", "schema_version": "3", "genome_assembly": "GRCh38", "project_release": "2025-07-10", "file_classification": "processed file", "@id": "/files-processed/4DNFI8TFEFP1/", "@type": ["FileProcessed", "File", "Item"], "uuid": "06c0a48b-a4f5-4483-af3a-77a716ea4ac6", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "display_title": "4DNFI8TFEFP1.csv", "external_references": [], "experiments": [{"display_title": "multiplexed FISH on B-lymphocyte - 4DNEX5ICQCRY", "status": "released", "@id": "/experiments-mic/4DNEX5ICQCRY/", "accession": "4DNEX5ICQCRY", "@type": ["ExperimentMic", "Experiment", "Item"], "uuid": "b61ee99e-ed3c-4b41-923c-3a0a66cd1be1", "biosample": {"@id": "/biosamples/4DNBSQFLSWT1/", "status": "released", "@type": ["Biosample", "Item"], "display_title": "4DNBSQFLSWT1", "biosource_summary": "B-lymphocyte", "modifications_summary": "None", "accession": "4DNBSQFLSWT1", "treatments_summary": "None", "uuid": "0894a39a-9612-4c31-8e7f-a3907593957e", "biosource": [{"display_title": "B-lymphocyte - 4DNSR2VO3WVV", "status": "released", "biosource_type": "primary cell", "uuid": "f306c98f-3502-4128-95d8-ecca84216c65", "@id": "/biosources/4DNSR2VO3WVV/", "cell_line_tier": "Unclassified", "@type": ["Biosource", "Item"], "individual": {"display_title": "4DNINZ7F4OCV", "protected_data": true, "status": "released", "uuid": "63cb6a62-0dae-4720-8177-a7e09bccd558", "@id": "/individuals-human/4DNINZ7F4OCV/", "@type": ["IndividualHuman", "Individual", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "cell_line": {"status": "released", "term_name": "lymphocyte of B lineage", "display_title": "B-lymphocyte", "@id": "/ontology-terms/CL:0000945/", "@type": ["OntologyTerm", "Item"], "term_id": "CL:0000945", "preferred_name": "B-lymphocyte", "uuid": "0c98ef0b-9a03-43f3-b409-fb091e62e2f8", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "organism": {"scientific_name": "Homo sapiens", "@type": ["Organism", "Item"], "name": "human", "display_title": "H. sapiens", "@id": "/organisms/9606/", "status": "released", "uuid": "7745b647-ff15-4ff3-9ced-b897d4e2983c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "tissue": {"uuid": "111147bc-8535-4448-903e-854af460a233", "@type": ["OntologyTerm", "Item"], "display_title": "blood", "@id": "/ontology-terms/UBERON:0000178/", "status": "released", "term_id": "UBERON:0000178", "preferred_name": "blood", "term_name": "blood", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "experiment_type": {"@type": ["ExperimentType", "Item"], "display_title": "multiplexed FISH", "status": "released", "uuid": "bcdda46a-489d-4d22-be80-c9c21552c915", "@id": "/experiment-types/multiplexed-fish/", "title": "multiplexed FISH", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "experiment_sets": [{"accession": "4DNESFAJCG4W", "status": "released", "uuid": "13165dd3-956d-4244-b509-a5319a19b41f", "experimentset_type": "replicate", "display_title": "4DNESFAJCG4W", "@type": ["ExperimentSetReplicate", "ExperimentSet", "Item"], "@id": "/experiment-set-replicates/4DNESFAJCG4W/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "last_modified": {"date_modified": "2025-08-21T15:14:44.036372+00:00"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "file_type_detailed": "FOF-CT - trace data (csv)", "track_and_facet_info": {"experimental_lab": "Deplancke Lab", "experiment_type": "multiplexed FISH", "experiment_bucket": "processed file", "assay_info": "GRCh38:17:63486119-63686118 region", "dataset": "Multiplexed FISH in lymphoblastoid cell line", "condition": "homozygous reference", "replicate_info": "Biorep 2, Techrep 1", "biosource_name": "B-lymphocyte", "lab_name": "Deplancke Lab"}, "title": "4DNFI8TFEFP1", "href": "/files-processed/4DNFI8TFEFP1/@@download/4DNFI8TFEFP1.csv", "upload_key": "06c0a48b-a4f5-4483-af3a-77a716ea4ac6/4DNFI8TFEFP1.csv", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/06c0a48b-a4f5-4483-af3a-77a716ea4ac6/4DNFI8TFEFP1.csv", "tsv_notes": "", "workflow_run_inputs": [{"status": "released", "uuid": "aa1cbe59-1027-49d6-99e1-6e82d4b07d56", "display_title": "md5 0.2.6 run 2025-07-08 15:27:33.001662", "@type": ["WorkflowRunAwsem", "WorkflowRun", "Item"], "@id": "/workflow-runs-awsem/aa1cbe59-1027-49d6-99e1-6e82d4b07d56/", "output_files": [{"workflow_argument_name": "report"}], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "workflow": {"display_title": "md5 0.2.6 - 4DNWF2HFF82B", "status": "released", "title": "md5 0.2.6", "uuid": "c77a117b-9a58-477e-aaa5-291a109a99f6", "@type": ["Workflow", "Item"], "@id": "/workflows/4DNWF2HFF82B/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "input_files": [{"workflow_argument_name": "input_file", "value": {"accession": "4DNFI8TFEFP1", "filename": "LCLA_B2_T1_trace.csv", "@type": ["FileProcessed", "File", "Item"], "status": "released", "display_title": "4DNFI8TFEFP1.csv", "uuid": "06c0a48b-a4f5-4483-af3a-77a716ea4ac6", "@id": "/files-processed/4DNFI8TFEFP1/", "file_format": {"file_format": "csv", "@type": ["FileFormat", "Item"], "display_title": "csv", "uuid": "d13d06cf-218e-4f61-55f0-94f336118b2c", "status": "released", "@id": "/file-formats/csv/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}]}], "workflow_run_outputs": [], "experiment_sets": [], "source_experiment_sets": [{"display_title": "4DNESFAJCG4W", "uuid": "13165dd3-956d-4244-b509-a5319a19b41f", "@type": ["ExperimentSetReplicate", "ExperimentSet", "Item"], "@id": "/experiment-set-replicates/4DNESFAJCG4W/", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "@context": "/terms/", "aggregated-items": {"last_modified": [{"parent": "/experiments-mic/4DNEX5ICQCRY/", "embedded_path": "experiments.last_modified", "item": {"date_modified": "2025-08-21T15:14:44.036372+00:00"}}, {"parent": "/files-processed/4DNFI8TFEFP1/", "embedded_path": "last_modified", "item": {"date_modified": "2025-09-05T17:18:46.173848+00:00"}}]}, "validation-errors": []}