{"lab": {"@type": ["Lab", "Item"], "@id": "/labs/ahilya-sawh-lab/", "uuid": "fe7249ca-3622-469a-ad9d-e5a85441bf52", "title": "Ahilya Sawh Lab", "display_title": "Ahilya Sawh Lab", "status": "current", "correspondence": [{"contact_email": "YWhpbHlhLnNhd2hAZ21haWwuY29t", "@id": "/users/a3b6e5d9-34ea-4997-a4cb-e4204c90bac5/", "display_title": "Ahilya Sawh"}], "pi": {"error": "no view permissions"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.fe7249ca-3622-469a-ad9d-e5a85441bf52"]}}, "award": {"display_title": "EXTERNAL AWARD", "name": "external-award", "status": "current", "project": "External", "center": "External", "uuid": "12a92962-8265-4fc0-b2f8-cf14f05db58b", "@type": ["Award", "Item"], "description": "Funding source is from outside 4DN.", "center_title": "External", "@id": "/awards/external-award/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "md5sum": "64fcd402ab13dd45309a7d68df45d382", "status": "released", "aliases": ["external-lab:fileproc_multiplexed_fish_c_elegans_chrV_rightarm"], "filename": "chrV_rightarm.csv", "accession": "4DNFIA88J8BF", "file_size": 1106114, "file_type": "FOF-CT - DNA-spot/trace core", "file_format": {"@type": ["FileFormat", "Item"], "status": "released", "uuid": "d13d06cf-218e-4f61-55f0-94f336118b2c", "display_title": "csv", "@id": "/file-formats/csv/", "file_format": "csv", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "date_created": "2025-04-08T16:16:28.461903+00:00", "submitted_by": {"error": "no view permissions"}, "last_modified": {"modified_by": {"error": "no view permissions"}, "date_modified": "2025-05-16T15:05:11.490479+00:00"}, "content_md5sum": "64fcd402ab13dd45309a7d68df45d382", "public_release": "2025-04-21", "schema_version": "3", "project_release": "2025-04-21", "contributing_labs": [{"status": "current", "correspondence": [{"contact_email": "c3VzYW4ubWFuZ29AdW5pYmFzLmNo", "@id": "/users/8b7b64e6-0e32-4635-8d23-568b29ddda6a/", "display_title": "Susan Mango"}], "@id": "/labs/susan-mango-lab/", "display_title": "Susan Mango", "uuid": "9827adc7-c9a9-44ae-a689-c83e09fee179", "@type": ["Lab", "Item"], "pi": {"error": "no view permissions"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.9827adc7-c9a9-44ae-a689-c83e09fee179"]}}], "file_classification": "processed file", "@id": "/files-processed/4DNFIA88J8BF/", "@type": ["FileProcessed", "File", "Item"], "uuid": "65edd8f6-52d5-4f20-9b12-310a00f12d6a", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "display_title": "4DNFIA88J8BF.csv", "external_references": [], "experiments": [{"accession": "4DNEXCFTLSKH", "@id": "/experiments-mic/4DNEXCFTLSKH/", "uuid": "b19571b7-9e52-4df9-847d-db2c20035bc5", "status": "released", "display_title": "multiplexed FISH on multicellular organism - 4DNEXCFTLSKH", "@type": ["ExperimentMic", "Experiment", "Item"], "biosample": {"biosource_summary": "multicellular organism", "uuid": "204833f8-00f7-4068-a5f8-2bd012209a13", "treatments_summary": "None", "@id": "/biosamples/4DNBS5G94GPO/", "modifications_summary": "None", "status": "released", "@type": ["Biosample", "Item"], "accession": "4DNBS5G94GPO", "display_title": "4DNBS5G94GPO", "biosource": [{"biosource_type": "multicellular organism", "display_title": "multicellular organism - 4DNSR6C4W4UN", "uuid": "c2d6f8b2-7f2f-4a6b-a6f2-791259101dde", "cell_line_tier": "Unclassified", "@type": ["Biosource", "Item"], "status": "released", "@id": "/biosources/4DNSR6C4W4UN/", "tissue": {"@type": ["OntologyTerm", "Item"], "term_id": "CL:0002321", "display_title": "embryonic cell", "preferred_name": "embryonic cell", "uuid": "a6ac6357-508d-4816-8064-039e04b678e8", "@id": "/ontology-terms/CL:0002321/", "term_name": "embryonic cell", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "organism": {"uuid": "9cdb2352-bb4c-457c-9823-1a6b8e89186a", "@id": "/organisms/6239/", "display_title": "C. elegans", "name": "c-elegans", "@type": ["Organism", "Item"], "scientific_name": "Caenorhabditis elegans", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "last_modified": {"date_modified": "2025-04-21T17:18:27.533230+00:00"}, "experiment_type": {"display_title": "multiplexed FISH", "@type": ["ExperimentType", "Item"], "status": "released", "title": "multiplexed FISH", "uuid": "bcdda46a-489d-4d22-be80-c9c21552c915", "@id": "/experiment-types/multiplexed-fish/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "experiment_sets": [{"accession": "4DNESMSZ4F9I", "uuid": "00f7bcc7-175d-4717-8c82-17c245830499", "@id": "/experiment-set-replicates/4DNESMSZ4F9I/", "experimentset_type": "replicate", "status": "released", "display_title": "4DNESMSZ4F9I", "@type": ["ExperimentSetReplicate", "ExperimentSet", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "file_type_detailed": "FOF-CT - DNA-spot/trace core (csv)", "track_and_facet_info": {"experimental_lab": "Ahilya Sawh Lab", "experiment_type": "multiplexed FISH", "experiment_bucket": "processed file", "assay_info": "3 TADs on ChrV (right-arm) (roundworm)", "dataset": "Multiplexed FISH in C. elegans", "condition": "ChrV - right arm, Wild type", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "multicellular organism", "lab_name": "Ahilya Sawh Lab"}, "title": "4DNFIA88J8BF", "href": "/files-processed/4DNFIA88J8BF/@@download/4DNFIA88J8BF.csv", "upload_key": "65edd8f6-52d5-4f20-9b12-310a00f12d6a/4DNFIA88J8BF.csv", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/65edd8f6-52d5-4f20-9b12-310a00f12d6a/4DNFIA88J8BF.csv", "tsv_notes": "", "workflow_run_inputs": [{"display_title": "md5 0.2.6 run 2025-04-08 17:27:12.624033", "uuid": "f7f1ac5d-3aa8-4a17-87f6-f32776552966", "@type": ["WorkflowRunAwsem", "WorkflowRun", "Item"], "@id": "/workflow-runs-awsem/f7f1ac5d-3aa8-4a17-87f6-f32776552966/", "status": "released", "output_files": [{"workflow_argument_name": "report"}], "workflow": {"@type": ["Workflow", "Item"], "title": "md5 0.2.6", "uuid": "c77a117b-9a58-477e-aaa5-291a109a99f6", "@id": "/workflows/4DNWF2HFF82B/", "status": "released", "display_title": "md5 0.2.6 - 4DNWF2HFF82B", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "input_files": [{"workflow_argument_name": "input_file", "value": {"@id": "/files-processed/4DNFIA88J8BF/", "status": "released", "filename": "chrV_rightarm.csv", "display_title": "4DNFIA88J8BF.csv", "uuid": "65edd8f6-52d5-4f20-9b12-310a00f12d6a", "accession": "4DNFIA88J8BF", "@type": ["FileProcessed", "File", "Item"], "file_format": {"@type": ["FileFormat", "Item"], "file_format": "csv", "@id": "/file-formats/csv/", "status": "released", "uuid": "d13d06cf-218e-4f61-55f0-94f336118b2c", "display_title": "csv", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "workflow_run_outputs": [], "experiment_sets": [], "source_experiment_sets": [{"status": "released", "display_title": "4DNESMSZ4F9I", "@id": "/experiment-set-replicates/4DNESMSZ4F9I/", "@type": ["ExperimentSetReplicate", "ExperimentSet", "Item"], "uuid": "00f7bcc7-175d-4717-8c82-17c245830499", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "@context": "/terms/", "aggregated-items": {"last_modified": [{"parent": "/experiments-mic/4DNEXCFTLSKH/", "embedded_path": "experiments.last_modified", "item": {"date_modified": "2025-04-21T17:18:27.533230+00:00"}}, {"parent": "/files-processed/4DNFIA88J8BF/", "embedded_path": "last_modified", "item": {"date_modified": "2025-05-16T15:05:11.490479+00:00"}}]}, "validation-errors": []}