{"lab": {"status": "current", "display_title": "Ahilya Sawh Lab", "@id": "/labs/ahilya-sawh-lab/", "@type": ["Lab", "Item"], "correspondence": [{"contact_email": "YWhpbHlhLnNhd2hAZ21haWwuY29t", "@id": "/users/a3b6e5d9-34ea-4997-a4cb-e4204c90bac5/", "display_title": "Ahilya Sawh"}], "title": "Ahilya Sawh Lab", "uuid": "fe7249ca-3622-469a-ad9d-e5a85441bf52", "pi": {"error": "no view permissions"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.fe7249ca-3622-469a-ad9d-e5a85441bf52"]}}, "award": {"uuid": "12a92962-8265-4fc0-b2f8-cf14f05db58b", "center_title": "External", "name": "external-award", "@id": "/awards/external-award/", "status": "current", "center": "External", "@type": ["Award", "Item"], "project": "External", "description": "Funding source is from outside 4DN.", "display_title": "EXTERNAL AWARD", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "md5sum": "a8aa60a3e684fd7b5e7496756fec2bf7", "status": "released", "aliases": ["external-lab:fileproc_multiplexed_fish_c_elegans_chrV_cec4"], "filename": "chrV_cec4.csv", "accession": "4DNFIBEPPRZB", "file_size": 275762, "file_type": "FOF-CT - DNA-spot/trace core", "file_format": {"@type": ["FileFormat", "Item"], "display_title": "csv", "file_format": "csv", "status": "released", "@id": "/file-formats/csv/", "uuid": "d13d06cf-218e-4f61-55f0-94f336118b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "date_created": "2025-04-08T16:16:19.353558+00:00", "submitted_by": {"error": "no view permissions"}, "last_modified": {"modified_by": {"error": "no view permissions"}, "date_modified": "2025-05-16T15:05:19.692440+00:00"}, "content_md5sum": "a8aa60a3e684fd7b5e7496756fec2bf7", "public_release": "2025-04-21", "schema_version": "3", "project_release": "2025-04-21", "contributing_labs": [{"@type": ["Lab", "Item"], "correspondence": [{"contact_email": "c3VzYW4ubWFuZ29AdW5pYmFzLmNo", "@id": "/users/8b7b64e6-0e32-4635-8d23-568b29ddda6a/", "display_title": "Susan Mango"}], "status": "current", "display_title": "Susan Mango", "uuid": "9827adc7-c9a9-44ae-a689-c83e09fee179", "@id": "/labs/susan-mango-lab/", "pi": {"error": "no view permissions"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.9827adc7-c9a9-44ae-a689-c83e09fee179"]}}], "file_classification": "processed file", "@id": "/files-processed/4DNFIBEPPRZB/", "@type": ["FileProcessed", "File", "Item"], "uuid": "54e428e6-9db9-4a17-8347-5d0c7c749aeb", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "display_title": "4DNFIBEPPRZB.csv", "external_references": [], "experiments": [{"uuid": "481f5197-f767-4a61-a69d-fee94201dae2", "status": "released", "@id": "/experiments-mic/4DNEXM7ZBJGM/", "@type": ["ExperimentMic", "Experiment", "Item"], "display_title": "multiplexed FISH on multicellular organism - 4DNEXM7ZBJGM", "accession": "4DNEXM7ZBJGM", "experiment_type": {"title": "multiplexed FISH", "@type": ["ExperimentType", "Item"], "status": "released", "display_title": "multiplexed FISH", "uuid": "bcdda46a-489d-4d22-be80-c9c21552c915", "@id": "/experiment-types/multiplexed-fish/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "biosample": {"uuid": "8099ca66-8f3f-4a46-bb00-f968699fce58", "status": "released", "display_title": "4DNBSEQXIUNW", "treatments_summary": "None", "accession": "4DNBSEQXIUNW", "@type": ["Biosample", "Item"], "biosource_summary": "multicellular organism", "@id": "/biosamples/4DNBSEQXIUNW/", "modifications_summary": "None", "biosource": [{"biosource_type": "multicellular organism", "@id": "/biosources/4DNSRHP9UI22/", "display_title": "multicellular organism - 4DNSRHP9UI22", "uuid": "46278e68-5f81-437e-9681-9e7719db268e", "@type": ["Biosource", "Item"], "cell_line_tier": "Unclassified", "status": "released", "tissue": {"term_id": "CL:0002321", "@type": ["OntologyTerm", "Item"], "term_name": "embryonic cell", "@id": "/ontology-terms/CL:0002321/", "display_title": "embryonic cell", "status": "released", "preferred_name": "embryonic cell", "uuid": "a6ac6357-508d-4816-8064-039e04b678e8", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "organism": {"@type": ["Organism", "Item"], "status": "released", "name": "c-elegans", "uuid": "9cdb2352-bb4c-457c-9823-1a6b8e89186a", "scientific_name": "Caenorhabditis elegans", "@id": "/organisms/6239/", "display_title": "C. elegans", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "experiment_sets": [{"@id": "/experiment-set-replicates/4DNES6N36I1G/", "status": "released", "uuid": "36b05cb3-df1f-4943-9b1c-503b1e589e41", "@type": ["ExperimentSetReplicate", "ExperimentSet", "Item"], "accession": "4DNES6N36I1G", "display_title": "4DNES6N36I1G", "experimentset_type": "replicate", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "last_modified": {"date_modified": "2025-04-21T17:18:28.959995+00:00"}}], "file_type_detailed": "FOF-CT - DNA-spot/trace core (csv)", "track_and_facet_info": {"experimental_lab": "Ahilya Sawh Lab", "experiment_type": "multiplexed FISH", "experiment_bucket": "processed file", "assay_info": "22 TADs on ChrV (roundworm)", "dataset": "Multiplexed FISH in C. elegans", "condition": "ChrV - Cec4 mutant", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "multicellular organism", "lab_name": "Ahilya Sawh Lab"}, "title": "4DNFIBEPPRZB", "href": "/files-processed/4DNFIBEPPRZB/@@download/4DNFIBEPPRZB.csv", "upload_key": "54e428e6-9db9-4a17-8347-5d0c7c749aeb/4DNFIBEPPRZB.csv", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/54e428e6-9db9-4a17-8347-5d0c7c749aeb/4DNFIBEPPRZB.csv", "tsv_notes": "", "workflow_run_inputs": [{"display_title": "md5 0.2.6 run 2025-04-08 17:27:17.586452", "uuid": "b5173c73-fea6-4ded-93e2-e3f4c89d672b", "status": "released", "@type": ["WorkflowRunAwsem", "WorkflowRun", "Item"], "@id": "/workflow-runs-awsem/b5173c73-fea6-4ded-93e2-e3f4c89d672b/", "input_files": [{"workflow_argument_name": "input_file", "value": {"@type": ["FileProcessed", "File", "Item"], "accession": "4DNFIBEPPRZB", "display_title": "4DNFIBEPPRZB.csv", "uuid": "54e428e6-9db9-4a17-8347-5d0c7c749aeb", "filename": "chrV_cec4.csv", "@id": "/files-processed/4DNFIBEPPRZB/", "status": "released", "file_format": {"@type": ["FileFormat", "Item"], "display_title": "csv", "uuid": "d13d06cf-218e-4f61-55f0-94f336118b2c", "file_format": "csv", "status": "released", "@id": "/file-formats/csv/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "output_files": [{"workflow_argument_name": "report"}], "workflow": {"title": "md5 0.2.6", "@id": "/workflows/4DNWF2HFF82B/", "uuid": "c77a117b-9a58-477e-aaa5-291a109a99f6", "display_title": "md5 0.2.6 - 4DNWF2HFF82B", "@type": ["Workflow", "Item"], "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "workflow_run_outputs": [], "experiment_sets": [], "source_experiment_sets": [{"@type": ["ExperimentSetReplicate", "ExperimentSet", "Item"], "display_title": "4DNES6N36I1G", "@id": "/experiment-set-replicates/4DNES6N36I1G/", "status": "released", "uuid": "36b05cb3-df1f-4943-9b1c-503b1e589e41", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "@context": "/terms/", "aggregated-items": {"last_modified": [{"parent": "/experiments-mic/4DNEXM7ZBJGM/", "embedded_path": "experiments.last_modified", "item": {"date_modified": "2025-04-21T17:18:28.959995+00:00"}}, {"parent": "/files-processed/4DNFIBEPPRZB/", "embedded_path": "last_modified", "item": {"date_modified": "2025-05-16T15:05:19.692440+00:00"}}]}, "validation-errors": []}