{"lab": {"status": "current", "@id": "/labs/4dn-dcic-lab/", "correspondence": [{"contact_email": "cGV0ZXJfcGFya0BobXMuaGFydmFyZC5lZHU=", "@id": "/users/fb287a31-e765-41c5-8c1d-665f8e9f025b/", "display_title": "Peter Park"}], "title": "4DN DCIC, HMS", "@type": ["Lab", "Item"], "display_title": "4DN DCIC, HMS", "uuid": "828cd4fe-ebb0-4b36-a94a-d2e3a36cc989", "pi": {"error": "no view permissions"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.828cd4fe-ebb0-4b36-a94a-d2e3a36cc989"]}}, "award": {"@id": "/awards/1U01CA200059-01/", "display_title": "4D NUCLEOME NETWORK DATA COORDINATION AND INTEGRATION CENTER - PHASE I", "status": "current", "uuid": "b0b9c607-f8b4-4f02-93f4-9895b461334b", "description": "DCIC: The goals of the 4D Nucleome (4DN) Data Coordination and Integration Center (DCIC) are to collect, store, curate, display, and analyze data generated in the 4DN Network. We have assembled a team of investigators with a strong track record in analysis of chromatin interaction data, image processing and three-dimensional data visualization, integrative analysis of genomic and epigenomic data, data portal development, large-scale computing, and development of secure and flexible cloud technologies. In Aim 1, we will develop efficient submission pipelines for data and metadata from 4DN data production groups. We will define data/metadata requirements and quality metrics in conjunction with the production groups and ensure that high-quality, well- annotated data become available to the wider scientific community in a timely manner. In Aim 2, we will develop a user-friendly data portal for the broad scientific community. This portal will provide an easy-to-navigate interface for accessing raw and intermediate data files, allow for programmatic access via APIs, and will incorporate novel analysis and visualization tools developed by DCIC as well as other Network members. For computing and storage scalability and cost-effectiveness, significant efforts will be devoted to development and deployment of cloud-based technology. We will conduct tutorials and workshops to facilitate the use of 4DN data and tools by external investigators. In Aim 3, we will coordinate and assist in conducting integrative analysis of the multiple data types. These efforts will examine key questions in higher-order chromatin organization using both sequence and image data, and the tools and algorithms developed here will be incorporated into the data portal for use by other investigators. These three aims will ensure that the data generated in 4DN will have maximal impact for the scientific community.", "project": "4DN", "name": "1U01CA200059-01", "center_title": "DCIC - DCIC", "@type": ["Award", "Item"], "pi": {"error": "no view permissions"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "md5sum": "22ea42e881c5a6f4d44334d9928fb5b8", "status": "released", "accession": "4DNFILEWWANZ", "file_size": 2205367054, "file_type": "contact list-replicate", "description": "This is an output file of the Hi-C processing pipeline", "extra_files": [{"href": "/files-processed/4DNFILEWWANZ/@@download/4DNFILEWWANZ.pairs.gz.px2", "uuid": "fac9617a-33cc-4764-a78c-e6e8fdc46624", "md5sum": "25b49c1b7c2c227f8cfc73bea5c375d9", "status": "released", "filename": "4DNFILEWWANZ", "accession": "4DNFILEWWANZ", "file_size": 24514298, "upload_key": "fac9617a-33cc-4764-a78c-e6e8fdc46624/4DNFILEWWANZ.pairs.gz.px2", "file_format": {"@id": "/file-formats/pairs_px2/", "@type": ["FileFormat", "Item"], "display_title": "pairs_px2", "status": "released", "uuid": "d13d06cf-218e-4f61-aaf0-91f226348b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"@type": ["FileFormat", "Item"], "display_title": "pairs", "status": "released", "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "pairs", "@id": "/file-formats/pairs/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "date_created": "2018-10-17T14:34:04.482272+00:00", "submitted_by": {"error": "no view permissions"}, "last_modified": {"modified_by": {"error": "no view permissions"}, "date_modified": "2021-05-17T21:55:43.340616+00:00"}, "public_release": "2018-11-05", "quality_metric": {"@id": "/quality-metrics-pairsqc/444aff77-2799-47b8-bfb2-d0e159307a1e/", "Trans reads": 30247242, "uuid": "444aff77-2799-47b8-bfb2-d0e159307a1e", "Total reads": 113867816, "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFILEWWANZ/pairsqc_report.html", "status": "released", "display_title": "QualityMetricPairsqc from 2018-10-18", "@type": ["QualityMetricPairsqc", "QualityMetric", "Item"], "Short cis reads (<20kb)": 39522380, "Cis reads (>20kb)": 44098194, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric_summary": [{"title": "Filtered Reads", "value": "113867816", "numberType": "integer"}, {"title": "Cis reads (>20kb)", "value": "38.728", "tooltip": "Percent of filtered reads (=44.1m)", "numberType": "percent"}, {"title": "Short cis reads", "value": "34.709", "tooltip": "Percent of filtered reads (=39.52m)", "numberType": "percent"}, {"title": "Trans Reads", "value": "26.563", "tooltip": "Percent of filtered reads (=30.25m)", "numberType": "percent"}]}, "schema_version": "3", "genome_assembly": "GRCh38", "project_release": "2018-11-05", "contributing_labs": [{"uuid": "3c577664-affb-41c4-bf27-9e21c2fc1554", "display_title": "Job Dekker, UMMS", "correspondence": [{"contact_email": "am9iLmRla2tlckB1bWFzc21lZC5lZHU=", "@id": "/users/83b5073a-069b-4162-9b30-6f42d5551e34/", "display_title": "Job Dekker"}], "@id": "/labs/job-dekker-lab/", "@type": ["Lab", "Item"], "status": "current", "pi": {"error": "no view permissions"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.3c577664-affb-41c4-bf27-9e21c2fc1554"]}}], "source_experiments": ["41cc5487-1558-47b6-b40a-7e02e4d0a6e4"], "file_classification": "processed file", "@id": "/files-processed/4DNFILEWWANZ/", "@type": ["FileProcessed", "File", "Item"], "uuid": "fac9617a-33cc-4764-a78c-e6e8fdc46624", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "display_title": "4DNFILEWWANZ.pairs.gz", "external_references": [], "experiments": [{"status": "released", "display_title": "Dilution Hi-C on ACHN with HindIII - 4DNEX1HJ66AS", "@id": "/experiments-hi-c/4DNEX1HJ66AS/", "uuid": "41cc5487-1558-47b6-b40a-7e02e4d0a6e4", "accession": "4DNEX1HJ66AS", "@type": ["ExperimentHiC", "Experiment", "Item"], "experiment_sets": [{"display_title": "4DNESKJERU1C", "experimentset_type": "replicate", "@type": ["ExperimentSetReplicate", "ExperimentSet", "Item"], "status": "released", "uuid": "b3b3969c-8d6b-4b87-b113-bb976d028174", "accession": "4DNESKJERU1C", "@id": "/experiment-set-replicates/4DNESKJERU1C/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "biosample": {"@id": "/biosamples/4DNBSFSA71Y4/", "display_title": "4DNBSFSA71Y4", "@type": ["Biosample", "Item"], "status": "released", "treatments_summary": "None", "modifications_summary": "None", "uuid": "52e28793-4e3b-4843-8572-b0d32ec19315", "biosource_summary": "ACHN", "accession": "4DNBSFSA71Y4", "biosource": [{"@id": "/biosources/4DNSRCVJWF6N/", "biosource_type": "primary cell", "@type": ["Biosource", "Item"], "cell_line_tier": "Unclassified", "status": "released", "uuid": "007b911f-3016-48d6-97d4-65a34882f9b2", "display_title": "ACHN - 4DNSRCVJWF6N", "individual": {"protected_data": false, "@id": "/individuals-human/4DNINWRKCB4D/", "display_title": "4DNINWRKCB4D", "@type": ["IndividualHuman", "Individual", "Item"], "uuid": "7830f2a7-d168-4d39-b8eb-da0854e559bf", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "tissue": {"term_name": "kidney", "term_id": "UBERON:0002113", "display_title": "kidney", "preferred_name": "kidney", "@id": "/ontology-terms/UBERON:0002113/", "status": "released", "uuid": "111167bc-8535-4448-903e-854af460a233", "@type": ["OntologyTerm", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "organism": {"display_title": "H. sapiens", "scientific_name": "Homo sapiens", "uuid": "7745b647-ff15-4ff3-9ced-b897d4e2983c", "@type": ["Organism", "Item"], "name": "human", "status": "released", "@id": "/organisms/9606/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "cell_line": {"uuid": "0cfbf9bd-34b3-4fca-8bd8-a540fa882067", "@id": "/ontology-terms/EFO:0002108/", "status": "released", "term_name": "ACHN", "preferred_name": "ACHN", "term_id": "EFO:0002108", "display_title": "ACHN", "@type": ["OntologyTerm", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "cell_culture_details": [{"status": "released", "uuid": "9ac52783-2378-4ef6-9e89-9bb1eda9ac4c", "@id": "/biosample-cell-cultures/9ac52783-2378-4ef6-9e89-9bb1eda9ac4c/", "display_title": "BiosampleCellCulture from 2018-10-04", "@type": ["BiosampleCellCulture", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "experiment_type": {"@id": "/experiment-types/dilution-hi-c/", "uuid": "832b7989-69ab-4bb6-97b9-195d5dd965ea", "title": "Dilution Hi-C", "status": "released", "@type": ["ExperimentType", "Item"], "display_title": "Dilution Hi-C", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "digestion_enzyme": {"name": "HindIII", "display_title": "HindIII", "@type": ["Enzyme", "Item"], "@id": "/enzymes/HindIII/", "uuid": "2ace2f00-c913-4bac-a6ef-0b316bc2108e", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "last_modified": {"date_modified": "2019-04-24T16:09:44.484940+00:00"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "file_type_detailed": "contact list-replicate (pairs)", "track_and_facet_info": {"experimental_lab": "Job Dekker, UMMS", "experiment_type": "Dilution Hi-C", "experiment_bucket": "processed file", "assay_info": "HindIII", "dataset": "Hi-C on ENCODE3 cell lines", "condition": "ACHN", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "ACHN", "lab_name": "4DN DCIC, HMS"}, "title": "4DNFILEWWANZ", "href": "/files-processed/4DNFILEWWANZ/@@download/4DNFILEWWANZ.pairs.gz", "upload_key": "fac9617a-33cc-4764-a78c-e6e8fdc46624/4DNFILEWWANZ.pairs.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/fac9617a-33cc-4764-a78c-e6e8fdc46624/4DNFILEWWANZ.pairs.gz", "tsv_notes": "", "workflow_run_inputs": [{"uuid": "ab5ee6ac-967c-4875-af2b-bbdb20dd82c9", "display_title": "pairsqc-single 0.2.6 run 2018-10-18 16:03:23.702287", "@id": "/workflow-runs-awsem/ab5ee6ac-967c-4875-af2b-bbdb20dd82c9/", "@type": ["WorkflowRunAwsem", "WorkflowRun", "Item"], "status": "released", "output_files": [{"workflow_argument_name": "report", "value_qc": {"url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFILEWWANZ/pairsqc_report.html", "overall_quality_status": "PASS", "@type": ["QualityMetricPairsqc", "QualityMetric", "Item"], "display_title": "QualityMetricPairsqc from 2018-10-18", "uuid": "444aff77-2799-47b8-bfb2-d0e159307a1e", "status": "released", "@id": "/quality-metrics-pairsqc/444aff77-2799-47b8-bfb2-d0e159307a1e/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "input_files": [{"workflow_argument_name": "input_pairs", "value": {"uuid": "fac9617a-33cc-4764-a78c-e6e8fdc46624", "@id": "/files-processed/4DNFILEWWANZ/", "@type": ["FileProcessed", "File", "Item"], "display_title": "4DNFILEWWANZ.pairs.gz", "accession": "4DNFILEWWANZ", "status": "released", "file_format": {"@id": "/file-formats/pairs/", "status": "released", "file_format": "pairs", "display_title": "pairs", "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b2c", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "chromsizes", "value": {"uuid": "4a6d10ee-2edb-4402-a98f-0edb1d58f5e9", "@id": "/files-reference/4DNFI823LSII/", "filename": "hg38.mainonly.chrom.sizes", "@type": ["FileReference", "File", "Item"], "display_title": "4DNFI823LSII.chrom.sizes", "accession": "4DNFI823LSII", "status": "released", "file_format": {"@id": "/file-formats/chromsizes/", "status": "released", "file_format": "chromsizes", "display_title": "chromsizes", "uuid": "d13d06cf-218e-4f61-55f0-93f226248b2c", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "workflow": {"title": "PairsQC 0.2.6", "uuid": "b8c533e0-f8c0-4510-b4a1-ac35158e27c3", "@id": "/workflows/4DNWFHB26CID/", "@type": ["Workflow", "Item"], "display_title": "PairsQC 0.2.6 - 4DNWFHB26CID", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"uuid": "16260ba0-ac4a-4e60-af53-d1aefdb1ef5a", "display_title": "hi-c-processing-pairs 0.2.6 run 2018-10-18 19:15:05.428842", "@id": "/workflow-runs-awsem/16260ba0-ac4a-4e60-af53-d1aefdb1ef5a/", "@type": ["WorkflowRunAwsem", "WorkflowRun", "Item"], "status": "released", "output_files": [{"workflow_argument_name": "merged_pairs", "value": {"@id": "/files-processed/4DNFICIK4Y8I/", "@type": ["FileProcessed", "File", "Item"], "status": "released", "display_title": "4DNFICIK4Y8I.pairs.gz", "uuid": "e5e1e9f4-37f0-4b32-bb8a-8ce411ad32b2", "accession": "4DNFICIK4Y8I", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"file_format": "pairs", "@type": ["FileFormat", "Item"], "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/pairs/", "status": "released", "display_title": "pairs", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}, {"workflow_argument_name": "hic", "value": {"@id": "/files-processed/4DNFI2DGL7LH/", "@type": ["FileProcessed", "File", "Item"], "status": "released", "display_title": "4DNFI2DGL7LH.hic", "uuid": "38f77979-5eb7-4b6f-9a60-c2451185db98", "accession": "4DNFI2DGL7LH", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"file_format": "hic", "@type": ["FileFormat", "Item"], "uuid": "d13d11cf-218e-4f61-bbf0-91f226248b2c", "@id": "/file-formats/hic/", "status": "released", "display_title": "hic", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}, {"workflow_argument_name": "mcool", "value": {"@id": "/files-processed/4DNFI2DQTKBA/", "@type": ["FileProcessed", "File", "Item"], "status": "released", "display_title": "4DNFI2DQTKBA.mcool", "uuid": "0e154f75-f6a7-43f7-9e51-0f9c8933b099", "accession": "4DNFI2DQTKBA", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"file_format": "mcool", "@type": ["FileFormat", "Item"], "uuid": "d13d06cf-218e-4f61-ccf0-91f226248b2c", "@id": "/file-formats/mcool/", "status": "released", "display_title": "mcool", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}, {"workflow_argument_name": "cooler_normvector", "value": {"@id": "/files-processed/4DNFILP2V3UL/", "@type": ["FileProcessed", "File", "Item"], "status": "released", "display_title": "4DNFILP2V3UL.normvector.juicerformat.gz", "uuid": "ec6ae615-6ba1-41ec-8876-1ff69ef80c70", "accession": "4DNFILP2V3UL", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"file_format": "normvector_juicerformat", "@type": ["FileFormat", "Item"], "uuid": "d13d06cf-218e-4f61-55f0-94f226118b2c", "@id": "/file-formats/normvector_juicerformat/", "status": "released", "display_title": "normvector_juicerformat", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "input_files": [{"workflow_argument_name": "input_pairs", "value": {"uuid": "fac9617a-33cc-4764-a78c-e6e8fdc46624", "@id": "/files-processed/4DNFILEWWANZ/", "@type": ["FileProcessed", "File", "Item"], "display_title": "4DNFILEWWANZ.pairs.gz", "accession": "4DNFILEWWANZ", "status": "released", "file_format": {"@id": "/file-formats/pairs/", "status": "released", "file_format": "pairs", "display_title": "pairs", "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b2c", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_pairs", "value": {"uuid": "54d4b499-5e8d-4627-b144-8122957fbfdf", "@id": "/files-processed/4DNFIDIOB1IS/", "@type": ["FileProcessed", "File", "Item"], "display_title": "4DNFIDIOB1IS.pairs.gz", "accession": "4DNFIDIOB1IS", "status": "released", "file_format": {"@id": "/file-formats/pairs/", "status": "released", "file_format": "pairs", "display_title": "pairs", "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b2c", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "restriction_file", "value": {"uuid": "595763c6-58d3-4ec4-8f04-3dbb88ed4736", "@id": "/files-reference/4DNFI823MBKE/", "filename": "GRCh38_HindIII_new.txt", "@type": ["FileReference", "File", "Item"], "display_title": "4DNFI823MBKE.txt", "accession": "4DNFI823MBKE", "status": "released", "file_format": {"@id": "/file-formats/juicer_format_restriction_site_file/", "status": "released", "file_format": "juicer_format_restriction_site_file", "display_title": "juicer_format_restriction_site_file", "uuid": "d13d06cf-218e-4f61-55f0-94f226248b2c", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "chromsizes", "value": {"uuid": "4a6d10ee-2edb-4402-a98f-0edb1d58f5e9", "@id": "/files-reference/4DNFI823LSII/", "filename": "hg38.mainonly.chrom.sizes", "@type": ["FileReference", "File", "Item"], "display_title": "4DNFI823LSII.chrom.sizes", "accession": "4DNFI823LSII", "status": "released", "file_format": {"@id": "/file-formats/chromsizes/", "status": "released", "file_format": "chromsizes", "display_title": "chromsizes", "uuid": "d13d06cf-218e-4f61-55f0-93f226248b2c", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "workflow": {"title": "Generation of multiresolution Hi-C contact matrices from a set of contact lists 0.2.6", "uuid": "c9e0e6f7-b0ed-4a42-9466-cadc2dd84df0", "@id": "/workflows/4DNWFTKI1QLK/", "@type": ["Workflow", "Item"], "display_title": "Generation of multiresolution Hi-C contact matrices from a set of contact lists 0.2.6 - 4DNWFTKI1QLK", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "workflow_run_outputs": [{"display_title": "hi-c-processing-bam 0.2.6 run 2018-10-17 14:34:04.887373", "@id": "/workflow-runs-awsem/7b75fd09-8aa0-4f8b-9e68-be7ba9f89335/", "status": "released", "@type": ["WorkflowRunAwsem", "WorkflowRun", "Item"], "uuid": "7b75fd09-8aa0-4f8b-9e68-be7ba9f89335", "input_files": [{"workflow_argument_name": "input_bams", "value": {"@id": "/files-processed/4DNFIJ1H8838/", "accession": "4DNFIJ1H8838", "display_title": "4DNFIJ1H8838.bam", "uuid": "1870f342-e7f0-4de1-aaca-bc37a04f264e", "@type": ["FileProcessed", "File", "Item"], "status": "released", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "@type": ["FileFormat", "Item"], "@id": "/file-formats/bam/", "file_format": "bam", "display_title": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"@id": "/files-processed/4DNFI4ALFAHI/", "accession": "4DNFI4ALFAHI", "display_title": "4DNFI4ALFAHI.bam", "uuid": "8caad1ae-2f79-4b42-9598-6ab2301cfcf3", "@type": ["FileProcessed", "File", "Item"], "status": "released", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "@type": ["FileFormat", "Item"], "@id": "/file-formats/bam/", "file_format": "bam", "display_title": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"@id": "/files-processed/4DNFIO88TA7Q/", "accession": "4DNFIO88TA7Q", "display_title": "4DNFIO88TA7Q.bam", "uuid": "53cf620a-ee0d-45ee-89f0-574a15730280", "@type": ["FileProcessed", "File", "Item"], "status": "released", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "@type": ["FileFormat", "Item"], "@id": "/file-formats/bam/", "file_format": "bam", "display_title": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"@id": "/files-processed/4DNFI9SZEYIM/", "accession": "4DNFI9SZEYIM", "display_title": "4DNFI9SZEYIM.bam", "uuid": "75f57d2b-ecd9-4fab-b0ee-714f47b79ac8", "@type": ["FileProcessed", "File", "Item"], "status": "released", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "@type": ["FileFormat", "Item"], "@id": "/file-formats/bam/", "file_format": "bam", "display_title": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"@id": "/files-processed/4DNFIR5MHI57/", "accession": "4DNFIR5MHI57", "display_title": "4DNFIR5MHI57.bam", "uuid": "830c7021-4a53-4522-9970-9e56b84ed43f", "@type": ["FileProcessed", "File", "Item"], "status": "released", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "@type": ["FileFormat", "Item"], "@id": "/file-formats/bam/", "file_format": "bam", "display_title": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"@id": "/files-processed/4DNFITDGCLZ3/", "accession": "4DNFITDGCLZ3", "display_title": "4DNFITDGCLZ3.bam", "uuid": "e216cfb6-9077-4772-82c6-9d84f9457d8c", "@type": ["FileProcessed", "File", "Item"], "status": "released", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "@type": ["FileFormat", "Item"], "@id": "/file-formats/bam/", "file_format": "bam", "display_title": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"@id": "/files-processed/4DNFISLZZ4X4/", "accession": "4DNFISLZZ4X4", "display_title": "4DNFISLZZ4X4.bam", "uuid": "e5866113-19d3-40a5-97a9-ac9981fd2944", "@type": ["FileProcessed", "File", "Item"], "status": "released", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "@type": ["FileFormat", "Item"], "@id": "/file-formats/bam/", "file_format": "bam", "display_title": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"@id": "/files-processed/4DNFIBQ4ZGDP/", "accession": "4DNFIBQ4ZGDP", "display_title": "4DNFIBQ4ZGDP.bam", "uuid": "c72808cf-9571-4895-b48e-b07dcfd1f6d5", "@type": ["FileProcessed", "File", "Item"], "status": "released", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "@type": ["FileFormat", "Item"], "@id": "/file-formats/bam/", "file_format": "bam", "display_title": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"@id": "/files-processed/4DNFIWLXE1TA/", "accession": "4DNFIWLXE1TA", "display_title": "4DNFIWLXE1TA.bam", "uuid": "61a6f8fa-ae14-4c3a-ae25-c86a5d252bc9", "@type": ["FileProcessed", "File", "Item"], "status": "released", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "@type": ["FileFormat", "Item"], "@id": "/file-formats/bam/", "file_format": "bam", "display_title": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"@id": "/files-processed/4DNFIGRLM2PQ/", "accession": "4DNFIGRLM2PQ", "display_title": "4DNFIGRLM2PQ.bam", "uuid": "81636bd6-6227-47c2-b72c-306cc429a5ae", "@type": ["FileProcessed", "File", "Item"], "status": "released", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "@type": ["FileFormat", "Item"], "@id": "/file-formats/bam/", "file_format": "bam", "display_title": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"@id": "/files-processed/4DNFICGB6BBX/", "accession": "4DNFICGB6BBX", "display_title": "4DNFICGB6BBX.bam", "uuid": "56503c48-45ab-4fbe-be80-0ff429136e39", "@type": ["FileProcessed", "File", "Item"], "status": "released", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "@type": ["FileFormat", "Item"], "@id": "/file-formats/bam/", "file_format": "bam", "display_title": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"@id": "/files-processed/4DNFI2VUQBXA/", "accession": "4DNFI2VUQBXA", "display_title": "4DNFI2VUQBXA.bam", "uuid": "fcc1b5d3-1ded-4701-9cce-31dc6cbccc85", "@type": ["FileProcessed", "File", "Item"], "status": "released", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "@type": ["FileFormat", "Item"], "@id": "/file-formats/bam/", "file_format": "bam", "display_title": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"@id": "/files-processed/4DNFI4Q2XZT5/", "accession": "4DNFI4Q2XZT5", "display_title": "4DNFI4Q2XZT5.bam", "uuid": "c4bf85dc-f777-4ecc-9e4b-a3e90f4f2b3c", "@type": ["FileProcessed", "File", "Item"], "status": "released", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "@type": ["FileFormat", "Item"], "@id": "/file-formats/bam/", "file_format": "bam", "display_title": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"@id": "/files-processed/4DNFI1H999H7/", "accession": "4DNFI1H999H7", "display_title": "4DNFI1H999H7.bam", "uuid": "32f06bb7-dc02-4d80-b47c-d8b88efaf0b7", "@type": ["FileProcessed", "File", "Item"], "status": "released", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "@type": ["FileFormat", "Item"], "@id": "/file-formats/bam/", "file_format": "bam", "display_title": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"@id": "/files-processed/4DNFICQSBFI5/", "accession": "4DNFICQSBFI5", "display_title": "4DNFICQSBFI5.bam", "uuid": "6ccbb098-338e-412b-a955-89b6ecf8148e", "@type": ["FileProcessed", "File", "Item"], "status": "released", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "@type": ["FileFormat", "Item"], "@id": "/file-formats/bam/", "file_format": "bam", "display_title": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"@id": "/files-processed/4DNFIDKR4RP6/", "accession": "4DNFIDKR4RP6", "display_title": "4DNFIDKR4RP6.bam", "uuid": "9593504f-2c27-443b-9f43-f909a4952967", "@type": ["FileProcessed", "File", "Item"], "status": "released", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "@type": ["FileFormat", "Item"], "@id": "/file-formats/bam/", "file_format": "bam", "display_title": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"@id": "/files-processed/4DNFILZVYN2T/", "accession": "4DNFILZVYN2T", "display_title": "4DNFILZVYN2T.bam", "uuid": "f66bd126-db89-4077-958b-c5341276c526", "@type": ["FileProcessed", "File", "Item"], "status": "released", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "@type": ["FileFormat", "Item"], "@id": "/file-formats/bam/", "file_format": "bam", "display_title": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"@id": "/files-processed/4DNFI9K1UDJH/", "accession": "4DNFI9K1UDJH", "display_title": "4DNFI9K1UDJH.bam", "uuid": "47b84f8f-0229-49a4-bbe7-850c650c30dc", "@type": ["FileProcessed", "File", "Item"], "status": "released", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "@type": ["FileFormat", "Item"], "@id": "/file-formats/bam/", "file_format": "bam", "display_title": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"@id": "/files-processed/4DNFIH2QLKR3/", "accession": "4DNFIH2QLKR3", "display_title": "4DNFIH2QLKR3.bam", "uuid": "bb48b38b-5bf0-4e3b-ab11-8fdb9f9ce2fa", "@type": ["FileProcessed", "File", "Item"], "status": "released", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "@type": ["FileFormat", "Item"], "@id": "/file-formats/bam/", "file_format": "bam", "display_title": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"@id": "/files-processed/4DNFI7P4WAKI/", "accession": "4DNFI7P4WAKI", "display_title": "4DNFI7P4WAKI.bam", "uuid": "036de921-ac79-4d98-a7ad-8b0686611649", "@type": ["FileProcessed", "File", "Item"], "status": "released", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "@type": ["FileFormat", "Item"], "@id": "/file-formats/bam/", "file_format": "bam", "display_title": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"@id": "/files-processed/4DNFIPBO4Z26/", "accession": "4DNFIPBO4Z26", "display_title": "4DNFIPBO4Z26.bam", "uuid": "02403aef-905d-4e2c-a0ba-1d88dda9d3ba", "@type": ["FileProcessed", "File", "Item"], "status": "released", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "@type": ["FileFormat", "Item"], "@id": "/file-formats/bam/", "file_format": "bam", "display_title": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"@id": "/files-processed/4DNFIJB1CAHJ/", "accession": "4DNFIJB1CAHJ", "display_title": "4DNFIJB1CAHJ.bam", "uuid": "c8af94fd-2668-4565-95e9-92f0e2ab0ae7", "@type": ["FileProcessed", "File", "Item"], "status": "released", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "@type": ["FileFormat", "Item"], "@id": "/file-formats/bam/", "file_format": "bam", "display_title": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"@id": "/files-processed/4DNFIGR31UIO/", "accession": "4DNFIGR31UIO", "display_title": "4DNFIGR31UIO.bam", "uuid": "a73da49b-e013-4378-b2c5-aeadf65ce0f1", "@type": ["FileProcessed", "File", "Item"], "status": "released", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "@type": ["FileFormat", "Item"], "@id": "/file-formats/bam/", "file_format": "bam", "display_title": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"@id": "/files-processed/4DNFIQVADPXM/", "accession": "4DNFIQVADPXM", "display_title": "4DNFIQVADPXM.bam", "uuid": "1c242468-8d17-47c2-a1e5-cfbe95a63fad", "@type": ["FileProcessed", "File", "Item"], "status": "released", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "@type": ["FileFormat", "Item"], "@id": "/file-formats/bam/", "file_format": "bam", "display_title": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"@id": "/files-processed/4DNFIZW6H9LM/", "accession": "4DNFIZW6H9LM", "display_title": "4DNFIZW6H9LM.bam", "uuid": "5259850f-8387-4017-97a6-d9cf1626cfc8", "@type": ["FileProcessed", "File", "Item"], "status": "released", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "@type": ["FileFormat", "Item"], "@id": "/file-formats/bam/", "file_format": "bam", "display_title": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"@id": "/files-processed/4DNFIC2FWOXO/", "accession": "4DNFIC2FWOXO", "display_title": "4DNFIC2FWOXO.bam", "uuid": "32a91f25-5210-486d-90f3-642fe56e51ea", "@type": ["FileProcessed", "File", "Item"], "status": "released", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "@type": ["FileFormat", "Item"], "@id": "/file-formats/bam/", "file_format": "bam", "display_title": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"@id": "/files-processed/4DNFILJKSMWL/", "accession": "4DNFILJKSMWL", "display_title": "4DNFILJKSMWL.bam", "uuid": "2d46a1bc-27ec-4a6b-9209-74548520dbbf", "@type": ["FileProcessed", "File", "Item"], "status": "released", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "@type": ["FileFormat", "Item"], "@id": "/file-formats/bam/", "file_format": "bam", "display_title": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"@id": "/files-processed/4DNFIRFMSEBL/", "accession": "4DNFIRFMSEBL", "display_title": "4DNFIRFMSEBL.bam", "uuid": "fc62dce3-98c2-4b2d-82fd-aae59e75f8d1", "@type": ["FileProcessed", "File", "Item"], "status": "released", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "@type": ["FileFormat", "Item"], "@id": "/file-formats/bam/", "file_format": "bam", "display_title": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"@id": "/files-processed/4DNFINPUR778/", "accession": "4DNFINPUR778", "display_title": "4DNFINPUR778.bam", "uuid": "4fc9989f-8104-464d-9858-0745da32237a", "@type": ["FileProcessed", "File", "Item"], "status": "released", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "@type": ["FileFormat", "Item"], "@id": "/file-formats/bam/", "file_format": "bam", "display_title": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"@id": "/files-processed/4DNFI1AT8FS1/", "accession": "4DNFI1AT8FS1", "display_title": "4DNFI1AT8FS1.bam", "uuid": "f677d196-20b1-4336-b21b-831049f7a1c6", "@type": ["FileProcessed", "File", "Item"], "status": "released", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "@type": ["FileFormat", "Item"], "@id": "/file-formats/bam/", "file_format": "bam", "display_title": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"@id": "/files-processed/4DNFIPHBA9BB/", "accession": "4DNFIPHBA9BB", "display_title": "4DNFIPHBA9BB.bam", "uuid": "2e553af4-b8c1-4524-a00c-383ceaa5e458", "@type": ["FileProcessed", "File", "Item"], "status": "released", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "@type": ["FileFormat", "Item"], "@id": "/file-formats/bam/", "file_format": "bam", "display_title": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"@id": "/files-processed/4DNFIPICP4VT/", "accession": "4DNFIPICP4VT", "display_title": "4DNFIPICP4VT.bam", "uuid": "a288fa24-c752-4777-976c-288c5eb30b27", "@type": ["FileProcessed", "File", "Item"], "status": "released", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "@type": ["FileFormat", "Item"], "@id": "/file-formats/bam/", "file_format": "bam", "display_title": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"@id": "/files-processed/4DNFIWDS4VZE/", "accession": "4DNFIWDS4VZE", "display_title": "4DNFIWDS4VZE.bam", "uuid": "6d129e18-41d6-4058-95d8-336b4977be67", "@type": ["FileProcessed", "File", "Item"], "status": "released", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "@type": ["FileFormat", "Item"], "@id": "/file-formats/bam/", "file_format": "bam", "display_title": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"@id": "/files-processed/4DNFIPXU1KLG/", "accession": "4DNFIPXU1KLG", "display_title": "4DNFIPXU1KLG.bam", "uuid": "033db918-af19-4d56-b691-6928a66d07c2", "@type": ["FileProcessed", "File", "Item"], "status": "released", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "@type": ["FileFormat", "Item"], "@id": "/file-formats/bam/", "file_format": "bam", "display_title": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"@id": "/files-processed/4DNFIQQQWXNT/", "accession": "4DNFIQQQWXNT", "display_title": "4DNFIQQQWXNT.bam", "uuid": "44e74652-26fe-4cf5-8d61-d0d2208b0126", "@type": ["FileProcessed", "File", "Item"], "status": "released", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "@type": ["FileFormat", "Item"], "@id": "/file-formats/bam/", "file_format": "bam", "display_title": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"@id": "/files-processed/4DNFIX69GIWM/", "accession": "4DNFIX69GIWM", "display_title": "4DNFIX69GIWM.bam", "uuid": "6ef72b0d-bf76-43e2-bcb7-b4139629802a", "@type": ["FileProcessed", "File", "Item"], "status": "released", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "@type": ["FileFormat", "Item"], "@id": "/file-formats/bam/", "file_format": "bam", "display_title": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"@id": "/files-processed/4DNFINVZJWRF/", "accession": "4DNFINVZJWRF", "display_title": "4DNFINVZJWRF.bam", "uuid": "35230921-7ec0-456a-8cfc-6113ab6b630b", "@type": ["FileProcessed", "File", "Item"], "status": "released", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "@type": ["FileFormat", "Item"], "@id": "/file-formats/bam/", "file_format": "bam", "display_title": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"@id": "/files-processed/4DNFI75VGQQ9/", "accession": "4DNFI75VGQQ9", "display_title": "4DNFI75VGQQ9.bam", "uuid": "94f5ddfa-f4e1-4e7b-9c32-af68be6df666", "@type": ["FileProcessed", "File", "Item"], "status": "released", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "@type": ["FileFormat", "Item"], "@id": "/file-formats/bam/", "file_format": "bam", "display_title": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"@id": "/files-processed/4DNFI6AQHNFJ/", "accession": "4DNFI6AQHNFJ", "display_title": "4DNFI6AQHNFJ.bam", "uuid": "1ff545a9-1dc2-47f6-8d7c-d849a33d0dfd", "@type": ["FileProcessed", "File", "Item"], "status": "released", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "@type": ["FileFormat", "Item"], "@id": "/file-formats/bam/", "file_format": "bam", "display_title": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"@id": "/files-processed/4DNFIL3XEUOG/", "accession": "4DNFIL3XEUOG", "display_title": "4DNFIL3XEUOG.bam", "uuid": "094885b7-c77f-4f0c-8c88-2ca14ce8eb19", "@type": ["FileProcessed", "File", "Item"], "status": "released", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "@type": ["FileFormat", "Item"], "@id": "/file-formats/bam/", "file_format": "bam", "display_title": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"@id": "/files-processed/4DNFIC517NGS/", "accession": "4DNFIC517NGS", "display_title": "4DNFIC517NGS.bam", "uuid": "81ffeccb-16e6-4017-a041-20102a6c5bbf", "@type": ["FileProcessed", "File", "Item"], "status": "released", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "@type": ["FileFormat", "Item"], "@id": "/file-formats/bam/", "file_format": "bam", "display_title": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"@id": "/files-processed/4DNFICNNI1D4/", "accession": "4DNFICNNI1D4", "display_title": "4DNFICNNI1D4.bam", "uuid": "ec12b5c3-a5d8-41f2-9e87-385667e3d075", "@type": ["FileProcessed", "File", "Item"], "status": "released", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "@type": ["FileFormat", "Item"], "@id": "/file-formats/bam/", "file_format": "bam", "display_title": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"@id": "/files-processed/4DNFIN5ICI4H/", "accession": "4DNFIN5ICI4H", "display_title": "4DNFIN5ICI4H.bam", "uuid": "e89129ff-6398-4341-85e0-a64959870852", "@type": ["FileProcessed", "File", "Item"], "status": "released", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "@type": ["FileFormat", "Item"], "@id": "/file-formats/bam/", "file_format": "bam", "display_title": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"@id": "/files-processed/4DNFIE1G7533/", "accession": "4DNFIE1G7533", "display_title": "4DNFIE1G7533.bam", "uuid": "4d73836a-dbf4-4d6a-a1fa-7f63b45eccc4", "@type": ["FileProcessed", "File", "Item"], "status": "released", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "@type": ["FileFormat", "Item"], "@id": "/file-formats/bam/", "file_format": "bam", "display_title": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"@id": "/files-processed/4DNFIYTIYTAO/", "accession": "4DNFIYTIYTAO", "display_title": "4DNFIYTIYTAO.bam", "uuid": "664a9524-7ef7-440f-be52-e4e795347c27", "@type": ["FileProcessed", "File", "Item"], "status": "released", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "@type": ["FileFormat", "Item"], "@id": "/file-formats/bam/", "file_format": "bam", "display_title": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"@id": "/files-processed/4DNFI4KTXLJP/", "accession": "4DNFI4KTXLJP", "display_title": "4DNFI4KTXLJP.bam", "uuid": "7f5479c4-ec50-4b7e-a863-24991bfa8c34", "@type": ["FileProcessed", "File", "Item"], "status": "released", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "@type": ["FileFormat", "Item"], "@id": "/file-formats/bam/", "file_format": "bam", "display_title": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"@id": "/files-processed/4DNFITSGM7MK/", "accession": "4DNFITSGM7MK", "display_title": "4DNFITSGM7MK.bam", "uuid": "18b51a77-5f8e-4fb3-943c-bb361b146d65", "@type": ["FileProcessed", "File", "Item"], "status": "released", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "@type": ["FileFormat", "Item"], "@id": "/file-formats/bam/", "file_format": "bam", "display_title": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "chromsize", "value": {"@id": "/files-reference/4DNFI823LSII/", "accession": "4DNFI823LSII", "display_title": "4DNFI823LSII.chrom.sizes", "uuid": "4a6d10ee-2edb-4402-a98f-0edb1d58f5e9", "@type": ["FileReference", "File", "Item"], "filename": "hg38.mainonly.chrom.sizes", "status": "released", "file_format": {"uuid": "d13d06cf-218e-4f61-55f0-93f226248b2c", "status": "released", "@type": ["FileFormat", "Item"], "@id": "/file-formats/chromsizes/", "file_format": "chromsizes", "display_title": "chromsizes", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "output_files": [{"workflow_argument_name": "annotated_bam", "value": {"accession": "4DNFIAXPJ49T", "@type": ["FileProcessed", "File", "Item"], "status": "released", "uuid": "a852f48a-b45e-4269-b612-8bea939ef4d5", "display_title": "4DNFIAXPJ49T.bam", "@id": "/files-processed/4DNFIAXPJ49T/", "file_format": {"file_format": "bam", "status": "released", "@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "display_title": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "filtered_pairs", "value": {"accession": "4DNFILEWWANZ", "@type": ["FileProcessed", "File", "Item"], "status": "released", "uuid": "fac9617a-33cc-4764-a78c-e6e8fdc46624", "display_title": "4DNFILEWWANZ.pairs.gz", "@id": "/files-processed/4DNFILEWWANZ/", "file_format": {"file_format": "pairs", "status": "released", "@id": "/file-formats/pairs/", "@type": ["FileFormat", "Item"], "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b2c", "display_title": "pairs", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "workflow": {"status": "released", "@type": ["Workflow", "Item"], "uuid": "023bfb3e-9a8b-42b9-a9d4-216079526f68", "display_title": "Hi-C Post-alignment Processing 0.2.6 - 4DNWFT69RBY4", "@id": "/workflows/4DNWFT69RBY4/", "title": "Hi-C Post-alignment Processing 0.2.6", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "experiment_sets": [], "pairsqc_table": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFILEWWANZ/4DNFILEWWANZ.plot_table.out", "source_experiment_sets": [{"display_title": "4DNESKJERU1C", "status": "released", "uuid": "b3b3969c-8d6b-4b87-b113-bb976d028174", "@type": ["ExperimentSetReplicate", "ExperimentSet", "Item"], "@id": "/experiment-set-replicates/4DNESKJERU1C/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "@context": "/terms/", "aggregated-items": {"last_modified": [{"parent": "/experiments-hi-c/4DNEX1HJ66AS/", "embedded_path": "experiments.last_modified", "item": {"date_modified": "2019-04-24T16:09:44.484940+00:00"}}, {"parent": "/files-processed/4DNFILEWWANZ/", "embedded_path": "last_modified", "item": {"date_modified": "2021-05-17T21:55:43.340616+00:00"}}]}, "validation-errors": []}