{"lab": {"uuid": "828cd4fe-ebb0-4b36-a94a-d2e3a36cc989", "correspondence": [{"contact_email": "cGV0ZXJfcGFya0BobXMuaGFydmFyZC5lZHU=", "@id": "/users/fb287a31-e765-41c5-8c1d-665f8e9f025b/", "display_title": "Peter Park"}], "title": "4DN DCIC, HMS", "display_title": "4DN DCIC, HMS", "@type": ["Lab", "Item"], "status": "current", "@id": "/labs/4dn-dcic-lab/", "pi": {"error": "no view permissions"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.828cd4fe-ebb0-4b36-a94a-d2e3a36cc989"]}}, "award": {"center_title": "DCIC - DCIC", "uuid": "b0b9c607-f8b4-4f02-93f4-9895b461334b", "name": "1U01CA200059-01", "@id": "/awards/1U01CA200059-01/", "status": "current", "description": "DCIC: The goals of the 4D Nucleome (4DN) Data Coordination and Integration Center (DCIC) are to collect, store, curate, display, and analyze data generated in the 4DN Network. We have assembled a team of investigators with a strong track record in analysis of chromatin interaction data, image processing and three-dimensional data visualization, integrative analysis of genomic and epigenomic data, data portal development, large-scale computing, and development of secure and flexible cloud technologies. In Aim 1, we will develop efficient submission pipelines for data and metadata from 4DN data production groups. We will define data/metadata requirements and quality metrics in conjunction with the production groups and ensure that high-quality, well- annotated data become available to the wider scientific community in a timely manner. In Aim 2, we will develop a user-friendly data portal for the broad scientific community. This portal will provide an easy-to-navigate interface for accessing raw and intermediate data files, allow for programmatic access via APIs, and will incorporate novel analysis and visualization tools developed by DCIC as well as other Network members. For computing and storage scalability and cost-effectiveness, significant efforts will be devoted to development and deployment of cloud-based technology. We will conduct tutorials and workshops to facilitate the use of 4DN data and tools by external investigators. In Aim 3, we will coordinate and assist in conducting integrative analysis of the multiple data types. These efforts will examine key questions in higher-order chromatin organization using both sequence and image data, and the tools and algorithms developed here will be incorporated into the data portal for use by other investigators. These three aims will ensure that the data generated in 4DN will have maximal impact for the scientific community.", "@type": ["Award", "Item"], "project": "4DN", "display_title": "4D NUCLEOME NETWORK DATA COORDINATION AND INTEGRATION CENTER - PHASE I", "pi": {"error": "no view permissions"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "md5sum": "ca691be203d22b92195225394659dd0c", "status": "released", "accession": "4DNFIPGEFYVN", "file_size": 1291974318, "file_type": "contact list-replicate", "description": "This is an output file of the Hi-C processing pipeline", "extra_files": [{"href": "/files-processed/4DNFIPGEFYVN/@@download/4DNFIPGEFYVN.pairs.gz.px2", "uuid": "706dcb6c-90d4-4f59-934c-39f47766df8c", "md5sum": "bc76415677610a3c1af1813752dc5078", "status": "released", "filename": "4DNFIPGEFYVN", "accession": "4DNFIPGEFYVN", "file_size": 12813952, "upload_key": "706dcb6c-90d4-4f59-934c-39f47766df8c/4DNFIPGEFYVN.pairs.gz.px2", "file_format": {"@type": ["FileFormat", "Item"], "status": "released", "uuid": "d13d06cf-218e-4f61-aaf0-91f226348b2c", "@id": "/file-formats/pairs_px2/", "display_title": "pairs_px2", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/pairs/", "display_title": "pairs", "@type": ["FileFormat", "Item"], "file_format": "pairs", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "date_created": "2018-12-04T12:24:38.657247+00:00", "submitted_by": {"error": "no view permissions"}, "last_modified": {"modified_by": {"error": "no view permissions"}, "date_modified": "2021-05-17T21:46:55.326994+00:00"}, "public_release": "2019-10-11", "quality_metric": {"display_title": "QualityMetricPairsqc from 2019-02-11", "Cis reads (>20kb)": 12115629, "Total reads": 69844784, "@type": ["QualityMetricPairsqc", "QualityMetric", "Item"], "@id": "/quality-metrics-pairsqc/eb53b331-fa8f-4fa8-af90-fa398e5cc15e/", "uuid": "eb53b331-fa8f-4fa8-af90-fa398e5cc15e", "Trans reads": 31554819, "status": "released", "Short cis reads (<20kb)": 26174336, "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIPGEFYVN/pairsqc_report.html", "quality_metric_summary": [{"title": "Filtered Reads", "value": "69844784", "numberType": "integer"}, {"title": "Cis reads (>20kb)", "value": "17.347", "tooltip": "Percent of filtered reads (=12.12m)", "numberType": "percent"}, {"title": "Short cis reads", "value": "37.475", "tooltip": "Percent of filtered reads (=26.17m)", "numberType": "percent"}, {"title": "Trans Reads", "value": "45.178", "tooltip": "Percent of filtered reads (=31.55m)", "numberType": "percent"}], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "schema_version": "3", "genome_assembly": "galGal5", "project_release": "2019-10-11", "contributing_labs": [{"uuid": "3c577664-affb-41c4-bf27-9e21c2fc1554", "@id": "/labs/job-dekker-lab/", "status": "current", "@type": ["Lab", "Item"], "display_title": "Job Dekker, UMMS", "correspondence": [{"contact_email": "am9iLmRla2tlckB1bWFzc21lZC5lZHU=", "@id": "/users/83b5073a-069b-4162-9b30-6f42d5551e34/", "display_title": "Job Dekker"}], "pi": {"error": "no view permissions"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.3c577664-affb-41c4-bf27-9e21c2fc1554"]}}], "source_experiments": ["9cdfa023-16ba-4687-afa4-3ace835e5287"], "file_classification": "processed file", "@id": "/files-processed/4DNFIPGEFYVN/", "@type": ["FileProcessed", "File", "Item"], "uuid": "706dcb6c-90d4-4f59-934c-39f47766df8c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "display_title": "4DNFIPGEFYVN.pairs.gz", "external_references": [], "experiments": [{"status": "released", "display_title": "Dilution Hi-C on DT40 with random integration of X. laevis Cdk1, CDK1 disruption with HindIII - 4DNEXZ1XWPPX", "@id": "/experiments-hi-c/4DNEXZ1XWPPX/", "@type": ["ExperimentHiC", "Experiment", "Item"], "uuid": "9cdfa023-16ba-4687-afa4-3ace835e5287", "accession": "4DNEXZ1XWPPX", "biosample": {"biosource_summary": "DT40 with random integration of X. laevis Cdk1, CDK1 disruption", "display_title": "4DNBSALC85HG", "@type": ["Biosample", "Item"], "@id": "/biosamples/4DNBSALC85HG/", "treatments_summary": "1NM-PP1 treatment (2.0 \u03bcM, 10.0h) and nocodazole treatment (0.5 \u03bcg/mL)", "accession": "4DNBSALC85HG", "status": "released", "uuid": "71a2ad79-7ecc-41df-9191-bd73ec32caa9", "modifications_summary": "None", "biosource": [{"@type": ["Biosource", "Item"], "status": "released", "@id": "/biosources/4DNSRFB455CY/", "display_title": "DT40 with random integration of X. laevis Cdk1, CDK1 disruption - 4DNSRFB455CY", "cell_line_tier": "Unclassified", "biosource_type": "immortalized cell line", "uuid": "bdb9d92e-1f52-4e84-a484-78e595791e5e", "tissue": {"status": "released", "term_name": "bursa of Fabricius", "@type": ["OntologyTerm", "Item"], "uuid": "1bfd1088-3311-4711-8c41-83dbed3db972", "preferred_name": "bursa of Fabricius", "@id": "/ontology-terms/UBERON:0003903/", "display_title": "bursa of Fabricius", "term_id": "UBERON:0003903", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "modifications": [{"display_title": "random integration of X. laevis Cdk1", "@type": ["Modification", "Item"], "override_modification_name": "random integration of X. laevis Cdk1", "genomic_change": "insertion", "modification_type": "Stable Transfection", "@id": "/modifications/4dca1ddb-ab74-44f5-ac84-738b0198886d/", "status": "released", "uuid": "4dca1ddb-ab74-44f5-ac84-738b0198886d", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"display_title": "Crispr disruption for CDK1 chicken gene", "@type": ["Modification", "Item"], "genomic_change": "disruption", "modification_type": "Crispr", "@id": "/modifications/fb27fdf6-4199-4179-8bb0-6101b1404aee/", "status": "released", "uuid": "fb27fdf6-4199-4179-8bb0-6101b1404aee", "target_of_mod": [{"@type": ["BioFeature", "Item"], "uuid": "03ca1ef3-0276-46ce-b277-13c123c9e520", "organism_name": "chicken", "display_title": "CDK1 chicken gene", "status": "released", "@id": "/bio-features/03ca1ef3-0276-46ce-b277-13c123c9e520/", "relevant_genes": [{"display_title": "CDK1", "@id": "/genes/396252/", "@type": ["Gene", "Item"], "uuid": "ecf839a7-e4fb-4703-a47b-b36d8562ea2c", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "feature_type": {"@type": ["OntologyTerm", "Item"], "uuid": "0231da78-1adc-4b8a-89b9-4f91908412a3", "status": "released", "@id": "/ontology-terms/SO:0000704/", "display_title": "gene", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "cell_line": {"status": "released", "term_id": "EFO:0006274", "term_name": "DT40", "display_title": "DT40", "preferred_name": "DT40", "@id": "/ontology-terms/EFO:0006274/", "@type": ["OntologyTerm", "Item"], "uuid": "fd057734-0765-4007-b7eb-d71ac7cbef65", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "individual": {"display_title": "4DNINYWTTO3D", "uuid": "836856fd-a0f7-4daf-afb2-4a098df8e8fc", "@id": "/individuals-chicken/4DNINYWTTO3D/", "@type": ["IndividualChicken", "Individual", "Item"], "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "organism": {"status": "released", "@id": "/organisms/9031/", "uuid": "fed8c206-762f-497f-821b-1c8ff7900bd2", "@type": ["Organism", "Item"], "name": "chicken", "scientific_name": "Gallus gallus", "display_title": "G. gallus", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "experiment_sets": [{"accession": "4DNESXDOBP9L", "@id": "/experiment-set-replicates/4DNESXDOBP9L/", "display_title": "4DNESXDOBP9L", "status": "released", "experimentset_type": "replicate", "uuid": "c00aa095-4d00-4936-9936-29dabd5d6655", "@type": ["ExperimentSetReplicate", "ExperimentSet", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "experiment_type": {"display_title": "Dilution Hi-C", "status": "released", "title": "Dilution Hi-C", "uuid": "832b7989-69ab-4bb6-97b9-195d5dd965ea", "@id": "/experiment-types/dilution-hi-c/", "@type": ["ExperimentType", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "digestion_enzyme": {"@type": ["Enzyme", "Item"], "display_title": "HindIII", "name": "HindIII", "status": "released", "@id": "/enzymes/HindIII/", "uuid": "2ace2f00-c913-4bac-a6ef-0b316bc2108e", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "last_modified": {"date_modified": "2019-10-11T20:54:52.669547+00:00"}}], "file_type_detailed": "contact list-replicate (pairs)", "track_and_facet_info": {"experimental_lab": "Job Dekker, UMMS", "experiment_type": "Dilution Hi-C", "experiment_bucket": "processed file", "assay_info": "HindIII", "dataset": "HiC on sorted sync. chicken cells", "condition": "prometaphase block (30m)", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "DT40 with random integration of X. laevis Cdk1, CDK1 disruption", "lab_name": "4DN DCIC, HMS"}, "title": "4DNFIPGEFYVN", "href": "/files-processed/4DNFIPGEFYVN/@@download/4DNFIPGEFYVN.pairs.gz", "upload_key": "706dcb6c-90d4-4f59-934c-39f47766df8c/4DNFIPGEFYVN.pairs.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/706dcb6c-90d4-4f59-934c-39f47766df8c/4DNFIPGEFYVN.pairs.gz", "tsv_notes": "", "workflow_run_inputs": [{"@type": ["WorkflowRunAwsem", "WorkflowRun", "Item"], "status": "released", "@id": "/workflow-runs-awsem/ebad50d0-9742-4d56-ad8b-ac23b85fd519/", "display_title": "pairsqc-single 0.2.6 run 2019-02-11 16:40:04.351520", "uuid": "ebad50d0-9742-4d56-ad8b-ac23b85fd519", "input_files": [{"workflow_argument_name": "chromsizes", "value": {"@id": "/files-reference/4DNFIQFZW4DX/", "@type": ["FileReference", "File", "Item"], "filename": "galGal5.chrom.sizes", "status": "released", "uuid": "a863a0f9-327d-4db5-857a-110997ffc307", "display_title": "4DNFIQFZW4DX.chrom.sizes", "accession": "4DNFIQFZW4DX", "file_format": {"status": "released", "@type": ["FileFormat", "Item"], "uuid": "d13d06cf-218e-4f61-55f0-93f226248b2c", "file_format": "chromsizes", "@id": "/file-formats/chromsizes/", "display_title": "chromsizes", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_pairs", "value": {"@id": "/files-processed/4DNFIPGEFYVN/", "@type": ["FileProcessed", "File", "Item"], "status": "released", "uuid": "706dcb6c-90d4-4f59-934c-39f47766df8c", "display_title": "4DNFIPGEFYVN.pairs.gz", "accession": "4DNFIPGEFYVN", "file_format": {"status": "released", "@type": ["FileFormat", "Item"], "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "pairs", "@id": "/file-formats/pairs/", "display_title": "pairs", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "output_files": [{"workflow_argument_name": "report", "value_qc": {"overall_quality_status": "PASS", "display_title": "QualityMetricPairsqc from 2019-02-11", "status": "released", "uuid": "eb53b331-fa8f-4fa8-af90-fa398e5cc15e", "@type": ["QualityMetricPairsqc", "QualityMetric", "Item"], "@id": "/quality-metrics-pairsqc/eb53b331-fa8f-4fa8-af90-fa398e5cc15e/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIPGEFYVN/pairsqc_report.html", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "workflow": {"@id": "/workflows/4DNWFHB26CID/", "title": "PairsQC 0.2.6", "uuid": "b8c533e0-f8c0-4510-b4a1-ac35158e27c3", "display_title": "PairsQC 0.2.6 - 4DNWFHB26CID", "@type": ["Workflow", "Item"], "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"@type": ["WorkflowRunAwsem", "WorkflowRun", "Item"], "status": "released", "@id": "/workflow-runs-awsem/603256fd-1c63-4377-803e-d6d18952931b/", "display_title": "hi-c-processing-pairs 0.2.7 run 2019-04-03 17:04:15.849555", "uuid": "603256fd-1c63-4377-803e-d6d18952931b", "input_files": [{"workflow_argument_name": "chromsizes", "value": {"@id": "/files-reference/4DNFIQFZW4DX/", "@type": ["FileReference", "File", "Item"], "filename": "galGal5.chrom.sizes", "status": "released", "uuid": "a863a0f9-327d-4db5-857a-110997ffc307", "display_title": "4DNFIQFZW4DX.chrom.sizes", "accession": "4DNFIQFZW4DX", "file_format": {"status": "released", "@type": ["FileFormat", "Item"], "uuid": "d13d06cf-218e-4f61-55f0-93f226248b2c", "file_format": "chromsizes", "@id": "/file-formats/chromsizes/", "display_title": "chromsizes", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_pairs", "value": {"@id": "/files-processed/4DNFIPGEFYVN/", "@type": ["FileProcessed", "File", "Item"], "status": "released", "uuid": "706dcb6c-90d4-4f59-934c-39f47766df8c", "display_title": "4DNFIPGEFYVN.pairs.gz", "accession": "4DNFIPGEFYVN", "file_format": {"status": "released", "@type": ["FileFormat", "Item"], "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "pairs", "@id": "/file-formats/pairs/", "display_title": "pairs", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "restriction_file", "value": {"@id": "/files-reference/4DNFITPCJFWJ/", "@type": ["FileReference", "File", "Item"], "filename": "galGal5_HindIII.txt", "status": "released", "uuid": "d035b8af-194d-41d6-ada2-6903299752f3", "display_title": "4DNFITPCJFWJ.txt", "accession": "4DNFITPCJFWJ", "file_format": {"status": "released", "@type": ["FileFormat", "Item"], "uuid": "d13d06cf-218e-4f61-55f0-94f226248b2c", "file_format": "juicer_format_restriction_site_file", "@id": "/file-formats/juicer_format_restriction_site_file/", "display_title": "juicer_format_restriction_site_file", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "output_files": [{"workflow_argument_name": "merged_pairs", "value": {"@id": "/files-processed/4DNFIQZFT8P3/", "accession": "4DNFIQZFT8P3", "@type": ["FileProcessed", "File", "Item"], "display_title": "4DNFIQZFT8P3.pairs.gz", "status": "released", "uuid": "e1eaa6c0-5132-49ba-88cd-f16e7035e60d", "file_format": {"@type": ["FileFormat", "Item"], "display_title": "pairs", "status": "released", "@id": "/file-formats/pairs/", "file_format": "pairs", "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "hic", "value": {"@id": "/files-processed/4DNFIVBWPFD7/", "accession": "4DNFIVBWPFD7", "@type": ["FileProcessed", "File", "Item"], "display_title": "4DNFIVBWPFD7.hic", "status": "released", "uuid": "17f7dc63-a1bc-4970-b389-87d9ee93b753", "file_format": {"@type": ["FileFormat", "Item"], "display_title": "hic", "status": "released", "@id": "/file-formats/hic/", "file_format": "hic", "uuid": "d13d11cf-218e-4f61-bbf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "mcool", "value": {"@id": "/files-processed/4DNFI1EG6RS3/", "accession": "4DNFI1EG6RS3", "@type": ["FileProcessed", "File", "Item"], "display_title": "4DNFI1EG6RS3.mcool", "status": "released", "uuid": "928abe70-0206-4a04-b90d-0b04e1295cb1", "file_format": {"@type": ["FileFormat", "Item"], "display_title": "mcool", "status": "released", "@id": "/file-formats/mcool/", "file_format": "mcool", "uuid": "d13d06cf-218e-4f61-ccf0-91f226248b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "workflow": {"@id": "/workflows/4DNWF2YBHXQM/", "title": "Generation of multiresolution Hi-C contact matrices from a set of contact lists 0.2.7", "uuid": "23bd6d73-4190-496d-837c-21bcdb3802ed", "display_title": "Generation of multiresolution Hi-C contact matrices from a set of contact lists 0.2.7 - 4DNWF2YBHXQM", "@type": ["Workflow", "Item"], "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "workflow_run_outputs": [{"status": "released", "uuid": "2fbd6ae4-0fe8-4e7c-8910-714a2b2ddbcd", "@type": ["WorkflowRunAwsem", "WorkflowRun", "Item"], "@id": "/workflow-runs-awsem/2fbd6ae4-0fe8-4e7c-8910-714a2b2ddbcd/", "display_title": "hi-c-processing-bam 0.2.6 run 2018-12-04 12:24:38.910036", "output_files": [{"workflow_argument_name": "annotated_bam", "value": {"status": "released", "accession": "4DNFIPKHJGHX", "uuid": "3f7c5580-3d1e-4e2f-9e01-d154686b51a7", "@type": ["FileProcessed", "File", "Item"], "@id": "/files-processed/4DNFIPKHJGHX/", "display_title": "4DNFIPKHJGHX.bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "file_format": "bam", "status": "released", "display_title": "bam", "@type": ["FileFormat", "Item"], "@id": "/file-formats/bam/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}, {"workflow_argument_name": "filtered_pairs", "value": {"status": "released", "accession": "4DNFIPGEFYVN", "uuid": "706dcb6c-90d4-4f59-934c-39f47766df8c", "@type": ["FileProcessed", "File", "Item"], "@id": "/files-processed/4DNFIPGEFYVN/", "display_title": "4DNFIPGEFYVN.pairs.gz", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "pairs", "status": "released", "display_title": "pairs", "@type": ["FileFormat", "Item"], "@id": "/file-formats/pairs/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}}], "workflow": {"display_title": "Hi-C Post-alignment Processing 0.2.6 - 4DNWFT69RBY4", "@id": "/workflows/4DNWFT69RBY4/", "@type": ["Workflow", "Item"], "title": "Hi-C Post-alignment Processing 0.2.6", "uuid": "023bfb3e-9a8b-42b9-a9d4-216079526f68", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "input_files": [{"workflow_argument_name": "chromsize", "value": {"accession": "4DNFIQFZW4DX", "@type": ["FileReference", "File", "Item"], "@id": "/files-reference/4DNFIQFZW4DX/", "uuid": "a863a0f9-327d-4db5-857a-110997ffc307", "filename": "galGal5.chrom.sizes", "display_title": "4DNFIQFZW4DX.chrom.sizes", "status": "released", "file_format": {"@id": "/file-formats/chromsizes/", "@type": ["FileFormat", "Item"], "display_title": "chromsizes", "uuid": "d13d06cf-218e-4f61-55f0-93f226248b2c", "status": "released", "file_format": "chromsizes", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"accession": "4DNFI8GJ7LKM", "@type": ["FileProcessed", "File", "Item"], "@id": "/files-processed/4DNFI8GJ7LKM/", "uuid": "4114d401-5314-43f7-82a8-bc3119e9d0bf", "display_title": "4DNFI8GJ7LKM.bam", "status": "released", "file_format": {"@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "display_title": "bam", "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "file_format": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"accession": "4DNFI9AAE7AI", "@type": ["FileProcessed", "File", "Item"], "@id": "/files-processed/4DNFI9AAE7AI/", "uuid": "767471c4-2513-474a-97dd-aa8ef81868cb", "display_title": "4DNFI9AAE7AI.bam", "status": "released", "file_format": {"@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "display_title": "bam", "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "file_format": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"accession": "4DNFI85GXW3Q", "@type": ["FileProcessed", "File", "Item"], "@id": "/files-processed/4DNFI85GXW3Q/", "uuid": "176c6fc9-9ade-4de0-8f0f-32bdb91cd150", "display_title": "4DNFI85GXW3Q.bam", "status": "released", "file_format": {"@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "display_title": "bam", "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "file_format": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"accession": "4DNFIRC2LKFF", "@type": ["FileProcessed", "File", "Item"], "@id": "/files-processed/4DNFIRC2LKFF/", "uuid": "cce0076d-c57a-40c3-a9dd-db37687605ee", "display_title": "4DNFIRC2LKFF.bam", "status": "released", "file_format": {"@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "display_title": "bam", "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "file_format": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"accession": "4DNFIGYCP79C", "@type": ["FileProcessed", "File", "Item"], "@id": "/files-processed/4DNFIGYCP79C/", "uuid": "c10dc902-af60-46a8-8f2e-3451c34bf95e", "display_title": "4DNFIGYCP79C.bam", "status": "released", "file_format": {"@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "display_title": "bam", "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "file_format": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"accession": "4DNFIVS1VVTM", "@type": ["FileProcessed", "File", "Item"], "@id": "/files-processed/4DNFIVS1VVTM/", "uuid": "6f33d6dd-395d-411b-9637-888d2a67cb3b", "display_title": "4DNFIVS1VVTM.bam", "status": "released", "file_format": {"@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "display_title": "bam", "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "file_format": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"accession": "4DNFISOVOTGZ", "@type": ["FileProcessed", "File", "Item"], "@id": "/files-processed/4DNFISOVOTGZ/", "uuid": "dece4e19-85ca-4dda-be90-1ea7880b3847", "display_title": "4DNFISOVOTGZ.bam", "status": "released", "file_format": {"@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "display_title": "bam", "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "file_format": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"accession": "4DNFIIDPHVQU", "@type": ["FileProcessed", "File", "Item"], "@id": "/files-processed/4DNFIIDPHVQU/", "uuid": "16fcae84-d014-4fad-873e-7c4a6aa9da88", "display_title": "4DNFIIDPHVQU.bam", "status": "released", "file_format": {"@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "display_title": "bam", "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "file_format": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"accession": "4DNFI5PYSMF1", "@type": ["FileProcessed", "File", "Item"], "@id": "/files-processed/4DNFI5PYSMF1/", "uuid": "d4f79c9a-c53d-4c92-8fa8-d4ef012dfdb3", "display_title": "4DNFI5PYSMF1.bam", "status": "released", "file_format": {"@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "display_title": "bam", "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "file_format": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"accession": "4DNFILXDLNEF", "@type": ["FileProcessed", "File", "Item"], "@id": "/files-processed/4DNFILXDLNEF/", "uuid": "88fbc6f2-7b0b-4b4a-b7c2-9ab4a1828d01", "display_title": "4DNFILXDLNEF.bam", "status": "released", "file_format": {"@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "display_title": "bam", "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "file_format": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"accession": "4DNFIJX9HXJU", "@type": ["FileProcessed", "File", "Item"], "@id": "/files-processed/4DNFIJX9HXJU/", "uuid": "85171fff-23e9-4173-98f6-d214f83ac9fb", "display_title": "4DNFIJX9HXJU.bam", "status": "released", "file_format": {"@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "display_title": "bam", "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "file_format": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"accession": "4DNFII1F2R3D", "@type": ["FileProcessed", "File", "Item"], "@id": "/files-processed/4DNFII1F2R3D/", "uuid": "56ea41a7-efd2-453b-975b-f075ee01c37d", "display_title": "4DNFII1F2R3D.bam", "status": "released", "file_format": {"@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "display_title": "bam", "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "file_format": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"accession": "4DNFIYO8YVI2", "@type": ["FileProcessed", "File", "Item"], "@id": "/files-processed/4DNFIYO8YVI2/", "uuid": "224d162c-46af-403a-92ac-af87c73cd9a5", "display_title": "4DNFIYO8YVI2.bam", "status": "released", "file_format": {"@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "display_title": "bam", "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "file_format": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"accession": "4DNFIOUHXRNF", "@type": ["FileProcessed", "File", "Item"], "@id": "/files-processed/4DNFIOUHXRNF/", "uuid": "7ee6d71d-a4cf-489f-bc90-f7b03e1e56f3", "display_title": "4DNFIOUHXRNF.bam", "status": "released", "file_format": {"@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "display_title": "bam", "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "file_format": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"accession": "4DNFITWZ23N7", "@type": ["FileProcessed", "File", "Item"], "@id": "/files-processed/4DNFITWZ23N7/", "uuid": "49f2cb20-84e2-472b-b25d-095704e28fab", "display_title": "4DNFITWZ23N7.bam", "status": "released", "file_format": {"@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "display_title": "bam", "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "file_format": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"accession": "4DNFI8MHD9JF", "@type": ["FileProcessed", "File", "Item"], "@id": "/files-processed/4DNFI8MHD9JF/", "uuid": "cc5564af-a07d-4c69-b79e-83fea336072b", "display_title": "4DNFI8MHD9JF.bam", "status": "released", "file_format": {"@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "display_title": "bam", "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "file_format": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"accession": "4DNFI1ARXHQC", "@type": ["FileProcessed", "File", "Item"], "@id": "/files-processed/4DNFI1ARXHQC/", "uuid": "ed5883c5-8078-409d-b9f7-379d413ddf57", "display_title": "4DNFI1ARXHQC.bam", "status": "released", "file_format": {"@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "display_title": "bam", "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "file_format": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"accession": "4DNFIMABQDNT", "@type": ["FileProcessed", "File", "Item"], "@id": "/files-processed/4DNFIMABQDNT/", "uuid": "d115ff20-eeea-441c-8d78-81a7dbd3a9df", "display_title": "4DNFIMABQDNT.bam", "status": "released", "file_format": {"@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "display_title": "bam", "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "file_format": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"accession": "4DNFIMTEIVES", "@type": ["FileProcessed", "File", "Item"], "@id": "/files-processed/4DNFIMTEIVES/", "uuid": "507821b3-0e20-42b8-bc50-6257cfe5887a", "display_title": "4DNFIMTEIVES.bam", "status": "released", "file_format": {"@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "display_title": "bam", "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "file_format": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"accession": "4DNFI48BD4MU", "@type": ["FileProcessed", "File", "Item"], "@id": "/files-processed/4DNFI48BD4MU/", "uuid": "1cec59f7-1859-40a4-a7f3-a8f43c399610", "display_title": "4DNFI48BD4MU.bam", "status": "released", "file_format": {"@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "display_title": "bam", "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "file_format": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"accession": "4DNFIENGWXR8", "@type": ["FileProcessed", "File", "Item"], "@id": "/files-processed/4DNFIENGWXR8/", "uuid": "c032026c-8953-46f8-93f1-46b9ce827f27", "display_title": "4DNFIENGWXR8.bam", "status": "released", "file_format": {"@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "display_title": "bam", "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "file_format": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"accession": "4DNFI8EUGEX4", "@type": ["FileProcessed", "File", "Item"], "@id": "/files-processed/4DNFI8EUGEX4/", "uuid": "bd6a6d39-14f3-4469-a865-4e5737e686a6", "display_title": "4DNFI8EUGEX4.bam", "status": "released", "file_format": {"@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "display_title": "bam", "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "file_format": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"accession": "4DNFIPS3RF9J", "@type": ["FileProcessed", "File", "Item"], "@id": "/files-processed/4DNFIPS3RF9J/", "uuid": "66ae7222-4e7d-4caa-b374-66118c68f7c7", "display_title": "4DNFIPS3RF9J.bam", "status": "released", "file_format": {"@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "display_title": "bam", "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "file_format": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"accession": "4DNFICHT5JQQ", "@type": ["FileProcessed", "File", "Item"], "@id": "/files-processed/4DNFICHT5JQQ/", "uuid": "49184fbb-65e1-4a9b-8f57-fb130429ad46", "display_title": "4DNFICHT5JQQ.bam", "status": "released", "file_format": {"@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "display_title": "bam", "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "file_format": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"accession": "4DNFI98JL38Z", "@type": ["FileProcessed", "File", "Item"], "@id": "/files-processed/4DNFI98JL38Z/", "uuid": "594a1f5f-d01b-45e6-825a-7ae7e11c498b", "display_title": "4DNFI98JL38Z.bam", "status": "released", "file_format": {"@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "display_title": "bam", "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "file_format": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"accession": "4DNFIMMSYMC5", "@type": ["FileProcessed", "File", "Item"], "@id": "/files-processed/4DNFIMMSYMC5/", "uuid": "f1fdae88-d7fd-4b9b-9780-bf21d17dd00f", "display_title": "4DNFIMMSYMC5.bam", "status": "released", "file_format": {"@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "display_title": "bam", "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "file_format": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"accession": "4DNFI851HKOO", "@type": ["FileProcessed", "File", "Item"], "@id": "/files-processed/4DNFI851HKOO/", "uuid": "ecdc421c-742a-4423-a54b-6c210f4e889e", "display_title": "4DNFI851HKOO.bam", "status": "released", "file_format": {"@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "display_title": "bam", "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "file_format": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"accession": "4DNFIKFWW4YH", "@type": ["FileProcessed", "File", "Item"], "@id": "/files-processed/4DNFIKFWW4YH/", "uuid": "48d28927-3e7c-4e26-809c-30c5c50197c2", "display_title": "4DNFIKFWW4YH.bam", "status": "released", "file_format": {"@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "display_title": "bam", "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "file_format": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"accession": "4DNFITK9Y4OT", "@type": ["FileProcessed", "File", "Item"], "@id": "/files-processed/4DNFITK9Y4OT/", "uuid": "12633888-f20b-4263-9bbf-1c2321ed41a8", "display_title": "4DNFITK9Y4OT.bam", "status": "released", "file_format": {"@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "display_title": "bam", "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "file_format": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"accession": "4DNFIUBDZKIE", "@type": ["FileProcessed", "File", "Item"], "@id": "/files-processed/4DNFIUBDZKIE/", "uuid": "cae50cb3-9e1a-4384-88de-14a28e635e19", "display_title": "4DNFIUBDZKIE.bam", "status": "released", "file_format": {"@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "display_title": "bam", "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "file_format": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"accession": "4DNFIMI1NUWU", "@type": ["FileProcessed", "File", "Item"], "@id": "/files-processed/4DNFIMI1NUWU/", "uuid": "09b1e285-805a-4a20-8df9-b2ff2526771d", "display_title": "4DNFIMI1NUWU.bam", "status": "released", "file_format": {"@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "display_title": "bam", "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "file_format": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"accession": "4DNFIQNRTI3Q", "@type": ["FileProcessed", "File", "Item"], "@id": "/files-processed/4DNFIQNRTI3Q/", "uuid": "4cd42a75-0065-47df-a6b0-060c66e7ee48", "display_title": "4DNFIQNRTI3Q.bam", "status": "released", "file_format": {"@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "display_title": "bam", "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "file_format": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"accession": "4DNFITS7WD4B", "@type": ["FileProcessed", "File", "Item"], "@id": "/files-processed/4DNFITS7WD4B/", "uuid": "94f8f322-86ea-49c5-9f58-ae5e3aaf347b", "display_title": "4DNFITS7WD4B.bam", "status": "released", "file_format": {"@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "display_title": "bam", "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "file_format": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"accession": "4DNFI8XCPKRV", "@type": ["FileProcessed", "File", "Item"], "@id": "/files-processed/4DNFI8XCPKRV/", "uuid": "67e6e365-1d36-4b27-8c9f-1729a0388490", "display_title": "4DNFI8XCPKRV.bam", "status": "released", "file_format": {"@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "display_title": "bam", "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "file_format": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"accession": "4DNFI4IHBPSJ", "@type": ["FileProcessed", "File", "Item"], "@id": "/files-processed/4DNFI4IHBPSJ/", "uuid": "32a5235b-c529-43a9-b2d0-0eb82ba48feb", "display_title": "4DNFI4IHBPSJ.bam", "status": "released", "file_format": {"@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "display_title": "bam", "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "file_format": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"accession": "4DNFID92RFZT", "@type": ["FileProcessed", "File", "Item"], "@id": "/files-processed/4DNFID92RFZT/", "uuid": "8fea2d75-bfae-49fc-bc0e-d13c47b1abcc", "display_title": "4DNFID92RFZT.bam", "status": "released", "file_format": {"@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "display_title": "bam", "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "file_format": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"accession": "4DNFIYF2OYTS", "@type": ["FileProcessed", "File", "Item"], "@id": "/files-processed/4DNFIYF2OYTS/", "uuid": "93ea4800-d4b4-483a-9769-ce01704dcd59", "display_title": "4DNFIYF2OYTS.bam", "status": "released", "file_format": {"@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "display_title": "bam", "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "file_format": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"accession": "4DNFIBNKV1EU", "@type": ["FileProcessed", "File", "Item"], "@id": "/files-processed/4DNFIBNKV1EU/", "uuid": "6a508da6-80e9-4152-a163-9efd52da99a7", "display_title": "4DNFIBNKV1EU.bam", "status": "released", "file_format": {"@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "display_title": "bam", "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "file_format": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"accession": "4DNFIVZPI6EY", "@type": ["FileProcessed", "File", "Item"], "@id": "/files-processed/4DNFIVZPI6EY/", "uuid": "cd09ed8a-9aa7-42d7-8040-1655c2ade8bb", "display_title": "4DNFIVZPI6EY.bam", "status": "released", "file_format": {"@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "display_title": "bam", "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "file_format": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"accession": "4DNFI8ZTA5XX", "@type": ["FileProcessed", "File", "Item"], "@id": "/files-processed/4DNFI8ZTA5XX/", "uuid": "9d95046f-c8a2-438c-ae77-ea2a877f36ca", "display_title": "4DNFI8ZTA5XX.bam", "status": "released", "file_format": {"@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "display_title": "bam", "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "file_format": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"accession": "4DNFIBB6GYJD", "@type": ["FileProcessed", "File", "Item"], "@id": "/files-processed/4DNFIBB6GYJD/", "uuid": "cd10a60e-0370-48d0-8aa3-3677b2fba775", "display_title": "4DNFIBB6GYJD.bam", "status": "released", "file_format": {"@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "display_title": "bam", "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "file_format": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"accession": "4DNFIPRYC8YS", "@type": ["FileProcessed", "File", "Item"], "@id": "/files-processed/4DNFIPRYC8YS/", "uuid": "40040b46-e2dd-45c2-a2f8-63edc90b2b85", "display_title": "4DNFIPRYC8YS.bam", "status": "released", "file_format": {"@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "display_title": "bam", "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "file_format": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"accession": "4DNFI95M9TMP", "@type": ["FileProcessed", "File", "Item"], "@id": "/files-processed/4DNFI95M9TMP/", "uuid": "62970210-eb88-4314-9e03-144800dbf9ff", "display_title": "4DNFI95M9TMP.bam", "status": "released", "file_format": {"@id": "/file-formats/bam/", "@type": ["FileFormat", "Item"], "display_title": "bam", "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "status": "released", "file_format": "bam", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "experiment_sets": [], "pairsqc_table": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIPGEFYVN/4DNFIPGEFYVN.plot_table.out", "source_experiment_sets": [{"status": "released", "@type": ["ExperimentSetReplicate", "ExperimentSet", "Item"], "uuid": "c00aa095-4d00-4936-9936-29dabd5d6655", "@id": "/experiment-set-replicates/4DNESXDOBP9L/", "display_title": "4DNESXDOBP9L", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "@context": "/terms/", "aggregated-items": {"last_modified": [{"parent": "/experiments-hi-c/4DNEXZ1XWPPX/", "embedded_path": "experiments.last_modified", "item": {"date_modified": "2019-10-11T20:54:52.669547+00:00"}}, {"parent": "/files-processed/4DNFIPGEFYVN/", "embedded_path": "last_modified", "item": {"date_modified": "2021-05-17T21:46:55.326994+00:00"}}]}, "validation-errors": []}