{"lab": {"uuid": "8c95312f-afa0-49ee-9d3c-e30849c74e50", "display_title": "Wei Xie, TSINGHUA", "title": "Wei Xie, TSINGHUA", "@type": ["Lab", "Item"], "status": "current", "@id": "/labs/wei-xie-lab/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.8c95312f-afa0-49ee-9d3c-e30849c74e50"]}}, "award": {"center": "External", "center_title": "External", "project": "External", "@id": "/awards/external-award/", "@type": ["Award", "Item"], "name": "external-award", "uuid": "12a92962-8265-4fc0-b2f8-cf14f05db58b", "status": "current", "display_title": "EXTERNAL AWARD", "description": "Funding source is from outside 4DN.", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "md5sum": "31ccc0a96b99118ced9ec1b09502d3d8", "status": "released", "accession": "4DNFIPTCYXD6", "file_size": 1123342657, "file_type": "contact list-replicate", "description": "This is an output file of the Hi-C processing pipeline", "extra_files": [{"href": "/files-processed/4DNFIPTCYXD6/@@download/4DNFIPTCYXD6.pairs.gz.px2", "uuid": "d3b0932c-27b1-4721-9388-87d2f82ede17", "md5sum": "4d9bf4f08c9cc70fcf50548d7b4874d8", "status": "released", "filename": "4DNFIPTCYXD6", "accession": "4DNFIPTCYXD6", "file_size": 16974903, "upload_key": "d3b0932c-27b1-4721-9388-87d2f82ede17/4DNFIPTCYXD6.pairs.gz.px2", "file_format": {"@type": ["FileFormat", "Item"], "@id": "/file-formats/pairs_px2/", "status": "released", "display_title": "pairs_px2", "uuid": "d13d06cf-218e-4f61-aaf0-91f226348b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "@id": "/file-formats/pairs/", "file_format": "pairs", "@type": ["FileFormat", "Item"], "display_title": "pairs", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "date_created": "2020-01-24T02:02:46.942024+00:00", "submitted_by": {"error": "no view permissions"}, "last_modified": {"modified_by": {"error": "no view permissions"}, "date_modified": "2021-04-06T20:19:12.682114+00:00"}, "public_release": "2020-02-07", "quality_metric": {"Total reads": 57863261, "status": "released", "uuid": "432169b7-107c-4af9-9a02-f8259722fa9a", "Cis reads (>20kb)": 27310425, "@type": ["QualityMetricPairsqc", "QualityMetric", "Item"], "@id": "/quality-metrics-pairsqc/432169b7-107c-4af9-9a02-f8259722fa9a/", "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIPTCYXD6/pairsqc_report.html", "Trans reads": 12917802, "Short cis reads (<20kb)": 17635034, "display_title": "QualityMetricPairsqc from 2020-01-24", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric_summary": [{"title": "Filtered Reads", "value": "57863261", "numberType": "integer"}, {"title": "Cis reads (>20kb)", "value": "47.198", "tooltip": "Percent of filtered reads (=27.31m)", "numberType": "percent"}, {"title": "Short cis reads", "value": "30.477", "tooltip": "Percent of filtered reads (=17.64m)", "numberType": "percent"}, {"title": "Trans Reads", "value": "22.325", "tooltip": "Percent of filtered reads (=12.92m)", "numberType": "percent"}]}, "schema_version": "3", "genome_assembly": "GRCm38", "project_release": "2020-02-07", "source_experiments": ["e768737b-ab94-43aa-afe3-17d492b92bf3"], "file_classification": "processed file", "@id": "/files-processed/4DNFIPTCYXD6/", "@type": ["FileProcessed", "File", "Item"], "uuid": "d3b0932c-27b1-4721-9388-87d2f82ede17", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "display_title": "4DNFIPTCYXD6.pairs.gz", "external_references": [], "experiments": [{"@id": "/experiments-hi-c/4DNEXG3DOGTC/", "display_title": "in situ Hi-C on Early 2-cell stage embryo with MboI - 4DNEXG3DOGTC", "@type": ["ExperimentHiC", "Experiment", "Item"], "status": "released", "accession": "4DNEXG3DOGTC", "uuid": "e768737b-ab94-43aa-afe3-17d492b92bf3", "biosample": {"biosource_summary": "Early 2-cell stage embryo", "@id": "/biosamples/4DNBS9ZSUSAR/", "modifications_summary": "None", "accession": "4DNBS9ZSUSAR", "@type": ["Biosample", "Item"], "treatments_summary": "None", "uuid": "ba9952d9-d4bd-40f9-84b2-f931e6e14fc2", "display_title": "4DNBS9ZSUSAR", "status": "released", "biosource": [{"display_title": "Early 2-cell stage embryo - 4DNSR5P95F1H", "cell_line_tier": "Unclassified", "status": "released", "@type": ["Biosource", "Item"], "@id": "/biosources/4DNSR5P95F1H/", "override_biosource_name": "Early 2-cell stage embryo", "uuid": "4d9a1543-3e33-4412-ac67-205a496e759b", "biosource_type": "tissue", "tissue": {"term_id": "UBERON:0019249", "@id": "/ontology-terms/UBERON:0019249/", "status": "released", "@type": ["OntologyTerm", "Item"], "preferred_name": "2-cell stage embryo", "uuid": "8f120a42-adbd-4f4c-b6fb-a96289124767", "display_title": "2-cell stage embryo", "term_name": "2-cell stage embryo", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "organism": {"scientific_name": "Mus musculus", "display_title": "M. musculus", "name": "mouse", "@id": "/organisms/10090/", "uuid": "3413218c-3d86-498b-a0a2-9a406638e786", "status": "released", "@type": ["Organism", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "individual": {"status": "released", "uuid": "15556aef-771d-4338-9ed9-6cc0be87a0ea", "@id": "/individuals-mouse/4DNINNKVDPKM/", "@type": ["IndividualMouse", "Individual", "Item"], "display_title": "4DNINNKVDPKM", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "experiment_type": {"@id": "/experiment-types/in-situ-hi-c/", "@type": ["ExperimentType", "Item"], "status": "released", "title": "in situ Hi-C", "uuid": "a2920a38-cdba-4ff0-b4f0-c6bb53257747", "display_title": "in situ Hi-C", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "digestion_enzyme": {"name": "MboI", "@type": ["Enzyme", "Item"], "@id": "/enzymes/MboI/", "display_title": "MboI", "status": "released", "uuid": "d8da42d0-bc20-40e5-bacf-c263b8603e03", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "experiment_sets": [{"@id": "/experiment-set-replicates/4DNESICXDTH7/", "status": "released", "@type": ["ExperimentSetReplicate", "ExperimentSet", "Item"], "experimentset_type": "replicate", "uuid": "30f6e0b9-9544-4470-b386-a3ffccdf9b18", "accession": "4DNESICXDTH7", "display_title": "4DNESICXDTH7", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "last_modified": {"date_modified": "2024-07-19T12:45:14.326720+00:00"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "file_type_detailed": "contact list-replicate (pairs)", "track_and_facet_info": {"experimental_lab": "Wei Xie, TSINGHUA", "experiment_type": "in situ Hi-C", "experiment_bucket": "processed file", "assay_info": "MboI", "dataset": "sisHi-C during early embryonic development", "condition": "Early 2-cell embryos", "replicate_info": "Biorep 1, Techrep 1", "biosource_name": "Early 2-cell stage embryo", "lab_name": "Wei Xie, TSINGHUA"}, "title": "4DNFIPTCYXD6", "href": "/files-processed/4DNFIPTCYXD6/@@download/4DNFIPTCYXD6.pairs.gz", "upload_key": "d3b0932c-27b1-4721-9388-87d2f82ede17/4DNFIPTCYXD6.pairs.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/d3b0932c-27b1-4721-9388-87d2f82ede17/4DNFIPTCYXD6.pairs.gz", "tsv_notes": "", "workflow_run_inputs": [{"status": "released", "display_title": "pairsqc-single 0.2.6 run 2020-01-24 17:01:07.516777", "uuid": "ede2ddda-f74a-4832-b45f-30964a79070c", "@type": ["WorkflowRunAwsem", "WorkflowRun", "Item"], "@id": "/workflow-runs-awsem/ede2ddda-f74a-4832-b45f-30964a79070c/", "output_files": [{"workflow_argument_name": "report", "value_qc": {"@type": ["QualityMetricPairsqc", "QualityMetric", "Item"], "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIPTCYXD6/pairsqc_report.html", "uuid": "432169b7-107c-4af9-9a02-f8259722fa9a", "status": "released", "@id": "/quality-metrics-pairsqc/432169b7-107c-4af9-9a02-f8259722fa9a/", "overall_quality_status": "PASS", "display_title": "QualityMetricPairsqc from 2020-01-24", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "input_files": [{"workflow_argument_name": "chromsizes", "value": {"status": "released", "uuid": "bd0784a5-2a3d-42f0-ba9c-d9b3dc0539c6", "@type": ["FileReference", "File", "Item"], "@id": "/files-reference/4DNFI3UBJ3HZ/", "filename": "mm10.mainonly.chrom.sizes", "display_title": "4DNFI3UBJ3HZ.chrom.sizes", "accession": "4DNFI3UBJ3HZ", "file_format": {"@id": "/file-formats/chromsizes/", "status": "released", "file_format": "chromsizes", "display_title": "chromsizes", "uuid": "d13d06cf-218e-4f61-55f0-93f226248b2c", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_pairs", "value": {"status": "released", "uuid": "d3b0932c-27b1-4721-9388-87d2f82ede17", "@type": ["FileProcessed", "File", "Item"], "@id": "/files-processed/4DNFIPTCYXD6/", "display_title": "4DNFIPTCYXD6.pairs.gz", "accession": "4DNFIPTCYXD6", "file_format": {"@id": "/file-formats/pairs/", "status": "released", "file_format": "pairs", "display_title": "pairs", "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b2c", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "workflow": {"@type": ["Workflow", "Item"], "@id": "/workflows/4DNWFHB26CID/", "uuid": "b8c533e0-f8c0-4510-b4a1-ac35158e27c3", "title": "PairsQC 0.2.6", "status": "released", "display_title": "PairsQC 0.2.6 - 4DNWFHB26CID", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, {"status": "released", "display_title": "hi-c-processing-pairs 0.2.7 run 2020-01-24 17:01:14.812954", "uuid": "7dc50b6e-fffb-45be-aa3f-d6e8cc168adc", "@type": ["WorkflowRunAwsem", "WorkflowRun", "Item"], "@id": "/workflow-runs-awsem/7dc50b6e-fffb-45be-aa3f-d6e8cc168adc/", "output_files": [{"workflow_argument_name": "merged_pairs", "value": {"uuid": "4218e188-143b-4dd2-8a4f-7f5e3abbad24", "display_title": "4DNFITOVAGGT.pairs.gz", "@type": ["FileProcessed", "File", "Item"], "accession": "4DNFITOVAGGT", "status": "released", "@id": "/files-processed/4DNFITOVAGGT/", "file_format": {"file_format": "pairs", "display_title": "pairs", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/pairs/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "hic", "value": {"uuid": "f54efece-280f-46ca-95e3-1f8a3cd18820", "display_title": "4DNFIK4CECUH.hic", "@type": ["FileProcessed", "File", "Item"], "accession": "4DNFIK4CECUH", "status": "released", "@id": "/files-processed/4DNFIK4CECUH/", "file_format": {"file_format": "hic", "display_title": "hic", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "d13d11cf-218e-4f61-bbf0-91f226248b2c", "@id": "/file-formats/hic/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "mcool", "value": {"uuid": "2c9e56f0-52c5-4bf7-8f2d-a4cc00a0ede0", "display_title": "4DNFIA99HPTQ.mcool", "@type": ["FileProcessed", "File", "Item"], "accession": "4DNFIA99HPTQ", "status": "released", "@id": "/files-processed/4DNFIA99HPTQ/", "file_format": {"file_format": "mcool", "display_title": "mcool", "status": "released", "@type": ["FileFormat", "Item"], "uuid": "d13d06cf-218e-4f61-ccf0-91f226248b2c", "@id": "/file-formats/mcool/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "input_files": [{"workflow_argument_name": "chromsizes", "value": {"status": "released", "uuid": "bd0784a5-2a3d-42f0-ba9c-d9b3dc0539c6", "@type": ["FileReference", "File", "Item"], "@id": "/files-reference/4DNFI3UBJ3HZ/", "filename": "mm10.mainonly.chrom.sizes", "display_title": "4DNFI3UBJ3HZ.chrom.sizes", "accession": "4DNFI3UBJ3HZ", "file_format": {"@id": "/file-formats/chromsizes/", "status": "released", "file_format": "chromsizes", "display_title": "chromsizes", "uuid": "d13d06cf-218e-4f61-55f0-93f226248b2c", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_pairs", "value": {"status": "released", "uuid": "d3b0932c-27b1-4721-9388-87d2f82ede17", "@type": ["FileProcessed", "File", "Item"], "@id": "/files-processed/4DNFIPTCYXD6/", "display_title": "4DNFIPTCYXD6.pairs.gz", "accession": "4DNFIPTCYXD6", "file_format": {"@id": "/file-formats/pairs/", "status": "released", "file_format": "pairs", "display_title": "pairs", "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b2c", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_pairs", "value": {"status": "released", "uuid": "a230df7b-c27a-4584-afd6-4e94fd8b5ae5", "@type": ["FileProcessed", "File", "Item"], "@id": "/files-processed/4DNFIJ5ALOZ3/", "display_title": "4DNFIJ5ALOZ3.pairs.gz", "accession": "4DNFIJ5ALOZ3", "file_format": {"@id": "/file-formats/pairs/", "status": "released", "file_format": "pairs", "display_title": "pairs", "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b2c", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_pairs", "value": {"status": "released", "uuid": "72cc1cc2-a8bc-4388-9dea-4c8a66a41206", "@type": ["FileProcessed", "File", "Item"], "@id": "/files-processed/4DNFIPLW24ZA/", "display_title": "4DNFIPLW24ZA.pairs.gz", "accession": "4DNFIPLW24ZA", "file_format": {"@id": "/file-formats/pairs/", "status": "released", "file_format": "pairs", "display_title": "pairs", "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b2c", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "restriction_file", "value": {"status": "released", "uuid": "cb3c293b-b5fe-4f47-9373-a29399ea1edc", "@type": ["FileReference", "File", "Item"], "@id": "/files-reference/4DNFIONK4G14/", "filename": "mm10_MboI.txt", "display_title": "4DNFIONK4G14.txt", "accession": "4DNFIONK4G14", "file_format": {"@id": "/file-formats/juicer_format_restriction_site_file/", "status": "released", "file_format": "juicer_format_restriction_site_file", "display_title": "juicer_format_restriction_site_file", "uuid": "d13d06cf-218e-4f61-55f0-94f226248b2c", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "workflow": {"@type": ["Workflow", "Item"], "@id": "/workflows/4DNWF2YBHXQM/", "uuid": "23bd6d73-4190-496d-837c-21bcdb3802ed", "title": "Generation of multiresolution Hi-C contact matrices from a set of contact lists 0.2.7", "status": "released", "display_title": "Generation of multiresolution Hi-C contact matrices from a set of contact lists 0.2.7 - 4DNWF2YBHXQM", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "workflow_run_outputs": [{"@type": ["WorkflowRunAwsem", "WorkflowRun", "Item"], "uuid": "70332c01-152a-41a1-a47b-b0aaebc02ff0", "display_title": "hi-c-processing-bam 0.2.6 run 2020-01-24 02:02:48.368823", "status": "released", "@id": "/workflow-runs-awsem/70332c01-152a-41a1-a47b-b0aaebc02ff0/", "input_files": [{"workflow_argument_name": "chromsize", "value": {"@type": ["FileReference", "File", "Item"], "@id": "/files-reference/4DNFI3UBJ3HZ/", "filename": "mm10.mainonly.chrom.sizes", "status": "released", "uuid": "bd0784a5-2a3d-42f0-ba9c-d9b3dc0539c6", "accession": "4DNFI3UBJ3HZ", "display_title": "4DNFI3UBJ3HZ.chrom.sizes", "file_format": {"file_format": "chromsizes", "@type": ["FileFormat", "Item"], "status": "released", "uuid": "d13d06cf-218e-4f61-55f0-93f226248b2c", "display_title": "chromsizes", "@id": "/file-formats/chromsizes/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"@type": ["FileProcessed", "File", "Item"], "@id": "/files-processed/4DNFII2QVNDU/", "status": "released", "uuid": "029a3fcf-2136-40d4-8e87-644867e0068b", "accession": "4DNFII2QVNDU", "display_title": "4DNFII2QVNDU.bam", "file_format": {"file_format": "bam", "@type": ["FileFormat", "Item"], "status": "released", "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "display_title": "bam", "@id": "/file-formats/bam/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"@type": ["FileProcessed", "File", "Item"], "@id": "/files-processed/4DNFIZ5M8ZWQ/", "status": "released", "uuid": "f1ec48ef-0ffc-4b49-ab7b-1924502fed5c", "accession": "4DNFIZ5M8ZWQ", "display_title": "4DNFIZ5M8ZWQ.bam", "file_format": {"file_format": "bam", "@type": ["FileFormat", "Item"], "status": "released", "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "display_title": "bam", "@id": "/file-formats/bam/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_bams", "value": {"@type": ["FileProcessed", "File", "Item"], "@id": "/files-processed/4DNFIGWMMKT4/", "status": "released", "uuid": "f7a8d63b-2e5e-4162-a3be-a69a2e4516af", "accession": "4DNFIGWMMKT4", "display_title": "4DNFIGWMMKT4.bam", "file_format": {"file_format": "bam", "@type": ["FileFormat", "Item"], "status": "released", "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "display_title": "bam", "@id": "/file-formats/bam/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "output_files": [{"workflow_argument_name": "annotated_bam", "value": {"status": "released", "display_title": "4DNFIPCDIDY7.bam", "uuid": "e71cf993-f290-4164-a89a-a08c74e7aff9", "@id": "/files-processed/4DNFIPCDIDY7/", "accession": "4DNFIPCDIDY7", "@type": ["FileProcessed", "File", "Item"], "file_format": {"file_format": "bam", "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b3c", "@id": "/file-formats/bam/", "status": "released", "display_title": "bam", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "filtered_pairs", "value": {"status": "released", "display_title": "4DNFIPTCYXD6.pairs.gz", "uuid": "d3b0932c-27b1-4721-9388-87d2f82ede17", "@id": "/files-processed/4DNFIPTCYXD6/", "accession": "4DNFIPTCYXD6", "@type": ["FileProcessed", "File", "Item"], "file_format": {"file_format": "pairs", "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b2c", "@id": "/file-formats/pairs/", "status": "released", "display_title": "pairs", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "workflow": {"@id": "/workflows/4DNWFT69RBY4/", "title": "Hi-C Post-alignment Processing 0.2.6", "status": "released", "@type": ["Workflow", "Item"], "display_title": "Hi-C Post-alignment Processing 0.2.6 - 4DNWFT69RBY4", "uuid": "023bfb3e-9a8b-42b9-a9d4-216079526f68", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "experiment_sets": [], "pairsqc_table": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIPTCYXD6/4DNFIPTCYXD6.plot_table.out", "source_experiment_sets": [{"@id": "/experiment-set-replicates/4DNESICXDTH7/", "display_title": "4DNESICXDTH7", "status": "released", "uuid": "30f6e0b9-9544-4470-b386-a3ffccdf9b18", "@type": ["ExperimentSetReplicate", "ExperimentSet", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "@context": "/terms/", "aggregated-items": {"last_modified": [{"parent": "/experiments-hi-c/4DNEXG3DOGTC/", "embedded_path": "experiments.last_modified", "item": {"date_modified": "2024-07-19T12:45:14.326720+00:00"}}, {"parent": "/files-processed/4DNFIPTCYXD6/", "embedded_path": "last_modified", "item": {"date_modified": "2021-04-06T20:19:12.682114+00:00"}}]}, "validation-errors": []}