{"lab": {"status": "current", "@id": "/labs/4dn-dcic-lab/", "correspondence": [{"contact_email": "cGV0ZXJfcGFya0BobXMuaGFydmFyZC5lZHU=", "@id": "/users/fb287a31-e765-41c5-8c1d-665f8e9f025b/", "display_title": "Peter Park"}], "title": "4DN DCIC, HMS", "@type": ["Lab", "Item"], "display_title": "4DN DCIC, HMS", "uuid": "828cd4fe-ebb0-4b36-a94a-d2e3a36cc989", "pi": {"error": "no view permissions"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.828cd4fe-ebb0-4b36-a94a-d2e3a36cc989"]}}, "award": {"@id": "/awards/1U01CA200059-01/", "display_title": "4D NUCLEOME NETWORK DATA COORDINATION AND INTEGRATION CENTER - PHASE I", "status": "current", "uuid": "b0b9c607-f8b4-4f02-93f4-9895b461334b", "description": "DCIC: The goals of the 4D Nucleome (4DN) Data Coordination and Integration Center (DCIC) are to collect, store, curate, display, and analyze data generated in the 4DN Network. We have assembled a team of investigators with a strong track record in analysis of chromatin interaction data, image processing and three-dimensional data visualization, integrative analysis of genomic and epigenomic data, data portal development, large-scale computing, and development of secure and flexible cloud technologies. In Aim 1, we will develop efficient submission pipelines for data and metadata from 4DN data production groups. We will define data/metadata requirements and quality metrics in conjunction with the production groups and ensure that high-quality, well- annotated data become available to the wider scientific community in a timely manner. In Aim 2, we will develop a user-friendly data portal for the broad scientific community. This portal will provide an easy-to-navigate interface for accessing raw and intermediate data files, allow for programmatic access via APIs, and will incorporate novel analysis and visualization tools developed by DCIC as well as other Network members. For computing and storage scalability and cost-effectiveness, significant efforts will be devoted to development and deployment of cloud-based technology. We will conduct tutorials and workshops to facilitate the use of 4DN data and tools by external investigators. In Aim 3, we will coordinate and assist in conducting integrative analysis of the multiple data types. These efforts will examine key questions in higher-order chromatin organization using both sequence and image data, and the tools and algorithms developed here will be incorporated into the data portal for use by other investigators. These three aims will ensure that the data generated in 4DN will have maximal impact for the scientific community.", "project": "4DN", "name": "1U01CA200059-01", "center_title": "DCIC - DCIC", "@type": ["Award", "Item"], "pi": {"error": "no view permissions"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "md5sum": "d2ddda45b0ef6a595095a0181f8935f9", "status": "released", "accession": "4DNFIVPL53FC", "file_size": 22177240763, "file_type": "contact list-combined", "description": "This is an output file of the Hi-C processing pipeline", "extra_files": [{"href": "/files-processed/4DNFIVPL53FC/@@download/4DNFIVPL53FC.pairs.gz.px2", "uuid": "a3307748-398a-47c9-b42e-87035ff78884", "md5sum": "b6e3871ec94b76afb76aabda3726c458", "status": "released", "filename": "4DNFIVPL53FC", "accession": "4DNFIVPL53FC", "file_size": 19639442, "upload_key": "a3307748-398a-47c9-b42e-87035ff78884/4DNFIVPL53FC.pairs.gz.px2", "file_format": {"@id": "/file-formats/pairs_px2/", "@type": ["FileFormat", "Item"], "display_title": "pairs_px2", "status": "released", "uuid": "d13d06cf-218e-4f61-aaf0-91f226348b2c", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "file_format": {"@type": ["FileFormat", "Item"], "display_title": "pairs", "status": "released", "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b2c", "file_format": "pairs", "@id": "/file-formats/pairs/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "date_created": "2018-12-03T01:59:13.240935+00:00", "submitted_by": {"error": "no view permissions"}, "last_modified": {"modified_by": {"error": "no view permissions"}, "date_modified": "2021-05-17T21:47:14.814303+00:00"}, "public_release": "2019-11-25", "quality_metric": {"@id": "/quality-metrics-pairsqc/9a1bfe3f-ac7b-4049-bd14-165bd20fde7e/", "Trans reads": 279101098, "uuid": "9a1bfe3f-ac7b-4049-bd14-165bd20fde7e", "Total reads": 1163734014, "url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIVPL53FC/pairsqc_report.html", "status": "released", "display_title": "QualityMetricPairsqc from 2018-12-06", "@type": ["QualityMetricPairsqc", "QualityMetric", "Item"], "Short cis reads (<20kb)": 358298657, "Cis reads (>20kb)": 526334259, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "quality_metric_summary": [{"title": "Filtered Reads", "value": "1163734014", "numberType": "integer"}, {"title": "Cis reads (>20kb)", "value": "45.228", "tooltip": "Percent of filtered reads (=526.33m)", "numberType": "percent"}, {"title": "Short cis reads", "value": "30.789", "tooltip": "Percent of filtered reads (=358.3m)", "numberType": "percent"}, {"title": "Trans Reads", "value": "23.983", "tooltip": "Percent of filtered reads (=279.1m)", "numberType": "percent"}]}, "schema_version": "3", "genome_assembly": "GRCm38", "project_release": "2019-11-25", "contributing_labs": [{"uuid": "ce54a7f7-af8a-4505-8327-e430634f494b", "display_title": "Rafael Casellas, NIH", "correspondence": [{"contact_email": "Y2FzZWxsYXJAbWFpbC5uaWguZ292", "@id": "/users/68b09572-0c3e-48c7-90a9-7bad21d6bac1/", "display_title": "Rafael Casellas"}], "@id": "/labs/rafael-casellas-lab/", "@type": ["Lab", "Item"], "status": "current", "pi": {"error": "no view permissions"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin", "role.lab_submitter", "submits_for.ce54a7f7-af8a-4505-8327-e430634f494b"]}}], "source_experiments": ["0f2ef1a4-6c95-498a-8938-31feb41681cd", "359fd05e-16a0-4eda-a781-a287b697bfc1", "c5de757a-bccf-405a-adcd-17c7536a7668", "70d491fa-c82a-4501-99b0-ff2471a52d6e", "e1e5d8f8-3d1a-41f3-8aa3-29e5c8a11576", "9133d9ab-d600-4f73-8043-c5ce7f189424", "1dc84000-1aa3-421a-8eaf-205fed201d72", "a7fd57aa-1319-4f5c-b5b1-8621b1b6085a", "3ed99b3f-1e89-4e0f-95ab-582a81b29a14", "491ba334-1c25-469f-a123-a5f7448dbd49", "de966b79-d475-41b9-904d-f8dd8a8d3024", "e7d8bd8b-3222-46a8-8870-819ade7cbdb5", "3e240a65-84a3-4957-9cf2-030ee7f74bf7", "66b791ea-6157-4832-9f57-900c54080b2a", "9cfcee66-678c-49fd-bfce-f74a0db0d9fc", "3bcad2b8-5c29-4f10-b460-36a22af3fc59", "2b7e42f9-db56-4a9c-9511-a5dccd76753c", "6d45cec7-bb22-4cf2-97ef-c561cc114049", "3921cc70-218b-4b37-b986-97751599d04d", "2056561f-420d-4a46-ae03-8bc714b451b3", "a16e961a-207f-4b97-bd70-ba9e0d24c521", "c842c8d5-46f2-4996-bb77-85d67a303b8a", "6f1476e3-b4ca-41e3-9441-f5c0fd224f54", "af875a29-1c29-45c7-9188-c26ed213f7aa"], "file_classification": "processed file", "@id": "/files-processed/4DNFIVPL53FC/", "@type": ["FileProcessed", "File", "Item"], "uuid": "a3307748-398a-47c9-b42e-87035ff78884", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}, "display_title": "4DNFIVPL53FC.pairs.gz", "external_references": [], "experiments": [], "file_type_detailed": "contact list-combined (pairs)", "track_and_facet_info": {"dataset": "Hi-C on CH12 +/- CTCF ZF domain", "condition": "CTCF Zinc Finger Exon9-11 mutation", "experimental_lab": "Rafael Casellas, NIH", "replicate_info": "merged replicates", "experiment_bucket": "processed file", "experiment_type": "in situ Hi-C", "assay_info": "MboI", "biosource_name": "CH12", "lab_name": "4DN DCIC, HMS"}, "title": "4DNFIVPL53FC", "href": "/files-processed/4DNFIVPL53FC/@@download/4DNFIVPL53FC.pairs.gz", "upload_key": "a3307748-398a-47c9-b42e-87035ff78884/4DNFIVPL53FC.pairs.gz", "open_data_url": "https://4dn-open-data-public.s3.amazonaws.com/fourfront-webprod/wfoutput/a3307748-398a-47c9-b42e-87035ff78884/4DNFIVPL53FC.pairs.gz", "tsv_notes": "", "workflow_run_inputs": [{"uuid": "1f645050-69f1-44db-84aa-a269530af6b8", "display_title": "pairsqc-single 0.2.6 run 2018-12-05 22:07:00.751066", "@id": "/workflow-runs-awsem/1f645050-69f1-44db-84aa-a269530af6b8/", "@type": ["WorkflowRunAwsem", "WorkflowRun", "Item"], "status": "released", "output_files": [{"workflow_argument_name": "report", "value_qc": {"url": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIVPL53FC/pairsqc_report.html", "overall_quality_status": "PASS", "@type": ["QualityMetricPairsqc", "QualityMetric", "Item"], "display_title": "QualityMetricPairsqc from 2018-12-06", "uuid": "9a1bfe3f-ac7b-4049-bd14-165bd20fde7e", "status": "released", "@id": "/quality-metrics-pairsqc/9a1bfe3f-ac7b-4049-bd14-165bd20fde7e/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "input_files": [{"workflow_argument_name": "chromsizes", "value": {"uuid": "bd0784a5-2a3d-42f0-ba9c-d9b3dc0539c6", "@id": "/files-reference/4DNFI3UBJ3HZ/", "filename": "mm10.mainonly.chrom.sizes", "@type": ["FileReference", "File", "Item"], "display_title": "4DNFI3UBJ3HZ.chrom.sizes", "accession": "4DNFI3UBJ3HZ", "status": "released", "file_format": {"@id": "/file-formats/chromsizes/", "status": "released", "file_format": "chromsizes", "display_title": "chromsizes", "uuid": "d13d06cf-218e-4f61-55f0-93f226248b2c", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_pairs", "value": {"uuid": "a3307748-398a-47c9-b42e-87035ff78884", "@id": "/files-processed/4DNFIVPL53FC/", "@type": ["FileProcessed", "File", "Item"], "display_title": "4DNFIVPL53FC.pairs.gz", "accession": "4DNFIVPL53FC", "status": "released", "file_format": {"@id": "/file-formats/pairs/", "status": "released", "file_format": "pairs", "display_title": "pairs", "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b2c", "@type": ["FileFormat", "Item"], "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "workflow": {"title": "PairsQC 0.2.6", "uuid": "b8c533e0-f8c0-4510-b4a1-ac35158e27c3", "@id": "/workflows/4DNWFHB26CID/", "@type": ["Workflow", "Item"], "display_title": "PairsQC 0.2.6 - 4DNWFHB26CID", "status": "released", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "workflow_run_outputs": [{"display_title": "hi-c-processing-pairs 0.2.6 run 2018-12-03 01:59:14.408532", "@id": "/workflow-runs-awsem/a291d841-7431-4329-805a-18f7b0b12d0b/", "status": "released", "@type": ["WorkflowRunAwsem", "WorkflowRun", "Item"], "uuid": "a291d841-7431-4329-805a-18f7b0b12d0b", "input_files": [{"workflow_argument_name": "chromsizes", "value": {"@id": "/files-reference/4DNFI3UBJ3HZ/", "accession": "4DNFI3UBJ3HZ", "display_title": "4DNFI3UBJ3HZ.chrom.sizes", "uuid": "bd0784a5-2a3d-42f0-ba9c-d9b3dc0539c6", "@type": ["FileReference", "File", "Item"], "filename": "mm10.mainonly.chrom.sizes", "status": "released", "file_format": {"uuid": "d13d06cf-218e-4f61-55f0-93f226248b2c", "status": "released", "@type": ["FileFormat", "Item"], "@id": "/file-formats/chromsizes/", "file_format": "chromsizes", "display_title": "chromsizes", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_pairs", "value": {"@id": "/files-processed/4DNFIL6JUA4M/", "accession": "4DNFIL6JUA4M", "display_title": "4DNFIL6JUA4M.pairs.gz", "uuid": "44104854-aea4-4858-a4e0-8379f333e03f", "@type": ["FileProcessed", "File", "Item"], "status": "released", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "@type": ["FileFormat", "Item"], "@id": "/file-formats/pairs/", "file_format": "pairs", "display_title": "pairs", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_pairs", "value": {"@id": "/files-processed/4DNFINLW9EFS/", "accession": "4DNFINLW9EFS", "display_title": "4DNFINLW9EFS.pairs.gz", "uuid": "00710d46-079a-4ded-8559-68ced59a9c81", "@type": ["FileProcessed", "File", "Item"], "status": "released", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "@type": ["FileFormat", "Item"], "@id": "/file-formats/pairs/", "file_format": "pairs", "display_title": "pairs", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_pairs", "value": {"@id": "/files-processed/4DNFITA8FLIB/", "accession": "4DNFITA8FLIB", "display_title": "4DNFITA8FLIB.pairs.gz", "uuid": "8459980b-beb2-45bd-85b9-7674253b6425", "@type": ["FileProcessed", "File", "Item"], "status": "released", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "@type": ["FileFormat", "Item"], "@id": "/file-formats/pairs/", "file_format": "pairs", "display_title": "pairs", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_pairs", "value": {"@id": "/files-processed/4DNFIEFV1DLE/", "accession": "4DNFIEFV1DLE", "display_title": "4DNFIEFV1DLE.pairs.gz", "uuid": "bc7e089b-6528-4853-a34b-540824494431", "@type": ["FileProcessed", "File", "Item"], "status": "released", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "@type": ["FileFormat", "Item"], "@id": "/file-formats/pairs/", "file_format": "pairs", "display_title": "pairs", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_pairs", "value": {"@id": "/files-processed/4DNFIFBUUER6/", "accession": "4DNFIFBUUER6", "display_title": "4DNFIFBUUER6.pairs.gz", "uuid": "bb595e67-7a18-4a47-bc35-281dc9d41292", "@type": ["FileProcessed", "File", "Item"], "status": "released", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "@type": ["FileFormat", "Item"], "@id": "/file-formats/pairs/", "file_format": "pairs", "display_title": "pairs", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_pairs", "value": {"@id": "/files-processed/4DNFIPKNUOX5/", "accession": "4DNFIPKNUOX5", "display_title": "4DNFIPKNUOX5.pairs.gz", "uuid": "75cf136a-aca6-48f7-acd9-899120833982", "@type": ["FileProcessed", "File", "Item"], "status": "released", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "@type": ["FileFormat", "Item"], "@id": "/file-formats/pairs/", "file_format": "pairs", "display_title": "pairs", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_pairs", "value": {"@id": "/files-processed/4DNFI64E9EPM/", "accession": "4DNFI64E9EPM", "display_title": "4DNFI64E9EPM.pairs.gz", "uuid": "c0e14d64-30a2-4719-be86-f491f86f5896", "@type": ["FileProcessed", "File", "Item"], "status": "released", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "@type": ["FileFormat", "Item"], "@id": "/file-formats/pairs/", "file_format": "pairs", "display_title": "pairs", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_pairs", "value": {"@id": "/files-processed/4DNFIQCLX8EL/", "accession": "4DNFIQCLX8EL", "display_title": "4DNFIQCLX8EL.pairs.gz", "uuid": "6feda32c-869f-41ea-9127-4976e64e71a9", "@type": ["FileProcessed", "File", "Item"], "status": "released", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "@type": ["FileFormat", "Item"], "@id": "/file-formats/pairs/", "file_format": "pairs", "display_title": "pairs", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_pairs", "value": {"@id": "/files-processed/4DNFIJTR5AWU/", "accession": "4DNFIJTR5AWU", "display_title": "4DNFIJTR5AWU.pairs.gz", "uuid": "b527fee4-cadc-465f-a66b-6e0343b3aced", "@type": ["FileProcessed", "File", "Item"], "status": "released", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "@type": ["FileFormat", "Item"], "@id": "/file-formats/pairs/", "file_format": "pairs", "display_title": "pairs", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_pairs", "value": {"@id": "/files-processed/4DNFIPXECM4H/", "accession": "4DNFIPXECM4H", "display_title": "4DNFIPXECM4H.pairs.gz", "uuid": "b4f32891-23c9-4959-ae9b-73b36964d658", "@type": ["FileProcessed", "File", "Item"], "status": "released", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "@type": ["FileFormat", "Item"], "@id": "/file-formats/pairs/", "file_format": "pairs", "display_title": "pairs", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_pairs", "value": {"@id": "/files-processed/4DNFIC844U76/", "accession": "4DNFIC844U76", "display_title": "4DNFIC844U76.pairs.gz", "uuid": "9a07e5f8-6adf-43c0-a3ef-302ba112211f", "@type": ["FileProcessed", "File", "Item"], "status": "released", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "@type": ["FileFormat", "Item"], "@id": "/file-formats/pairs/", "file_format": "pairs", "display_title": "pairs", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_pairs", "value": {"@id": "/files-processed/4DNFI927J3TD/", "accession": "4DNFI927J3TD", "display_title": "4DNFI927J3TD.pairs.gz", "uuid": "d8ed7f45-80fb-41b2-966f-c3d295d2d94b", "@type": ["FileProcessed", "File", "Item"], "status": "released", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "@type": ["FileFormat", "Item"], "@id": "/file-formats/pairs/", "file_format": "pairs", "display_title": "pairs", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_pairs", "value": {"@id": "/files-processed/4DNFI8RFZA12/", "accession": "4DNFI8RFZA12", "display_title": "4DNFI8RFZA12.pairs.gz", "uuid": "895b3abe-313c-4f2b-90de-6e1db2064435", "@type": ["FileProcessed", "File", "Item"], "status": "released", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "@type": ["FileFormat", "Item"], "@id": "/file-formats/pairs/", "file_format": "pairs", "display_title": "pairs", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_pairs", "value": {"@id": "/files-processed/4DNFIW9SYO8E/", "accession": "4DNFIW9SYO8E", "display_title": "4DNFIW9SYO8E.pairs.gz", "uuid": "210a9506-36e9-41d5-8104-85dc27f35810", "@type": ["FileProcessed", "File", "Item"], "status": "released", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "@type": ["FileFormat", "Item"], "@id": "/file-formats/pairs/", "file_format": "pairs", "display_title": "pairs", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_pairs", "value": {"@id": "/files-processed/4DNFILDLETBS/", "accession": "4DNFILDLETBS", "display_title": "4DNFILDLETBS.pairs.gz", "uuid": "5c5858e7-99e1-44eb-99c7-9d3626507f61", "@type": ["FileProcessed", "File", "Item"], "status": "released", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "@type": ["FileFormat", "Item"], "@id": "/file-formats/pairs/", "file_format": "pairs", "display_title": "pairs", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_pairs", "value": {"@id": "/files-processed/4DNFIPNHV4BJ/", "accession": "4DNFIPNHV4BJ", "display_title": "4DNFIPNHV4BJ.pairs.gz", "uuid": "6d92e998-3771-4642-9000-d2624f4c0b8f", "@type": ["FileProcessed", "File", "Item"], "status": "released", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "@type": ["FileFormat", "Item"], "@id": "/file-formats/pairs/", "file_format": "pairs", "display_title": "pairs", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_pairs", "value": {"@id": "/files-processed/4DNFIY4FXOJI/", "accession": "4DNFIY4FXOJI", "display_title": "4DNFIY4FXOJI.pairs.gz", "uuid": "5d758e10-fcf9-4cbe-8253-b88481b2c4fb", "@type": ["FileProcessed", "File", "Item"], "status": "released", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "@type": ["FileFormat", "Item"], "@id": "/file-formats/pairs/", "file_format": "pairs", "display_title": "pairs", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_pairs", "value": {"@id": "/files-processed/4DNFICG7BXHJ/", "accession": "4DNFICG7BXHJ", "display_title": "4DNFICG7BXHJ.pairs.gz", "uuid": "9dde26c0-9cb1-4847-b653-61a0c5fef437", "@type": ["FileProcessed", "File", "Item"], "status": "released", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "@type": ["FileFormat", "Item"], "@id": "/file-formats/pairs/", "file_format": "pairs", "display_title": "pairs", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_pairs", "value": {"@id": "/files-processed/4DNFITIGJNZY/", "accession": "4DNFITIGJNZY", "display_title": "4DNFITIGJNZY.pairs.gz", "uuid": "8c97a54b-ec2b-4e4c-9635-48a24242ab34", "@type": ["FileProcessed", "File", "Item"], "status": "released", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "@type": ["FileFormat", "Item"], "@id": "/file-formats/pairs/", "file_format": "pairs", "display_title": "pairs", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_pairs", "value": {"@id": "/files-processed/4DNFI42T9APY/", "accession": "4DNFI42T9APY", "display_title": "4DNFI42T9APY.pairs.gz", "uuid": "8b90b29a-31cc-4eea-a7d3-cd7a222a1525", "@type": ["FileProcessed", "File", "Item"], "status": "released", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "@type": ["FileFormat", "Item"], "@id": "/file-formats/pairs/", "file_format": "pairs", "display_title": "pairs", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_pairs", "value": {"@id": "/files-processed/4DNFIOSR5HJR/", "accession": "4DNFIOSR5HJR", "display_title": "4DNFIOSR5HJR.pairs.gz", "uuid": "aab0b16f-6800-48aa-abf2-13876af4015d", "@type": ["FileProcessed", "File", "Item"], "status": "released", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "@type": ["FileFormat", "Item"], "@id": "/file-formats/pairs/", "file_format": "pairs", "display_title": "pairs", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_pairs", "value": {"@id": "/files-processed/4DNFIZYC6TSA/", "accession": "4DNFIZYC6TSA", "display_title": "4DNFIZYC6TSA.pairs.gz", "uuid": "c1153d38-ecdf-4223-bbe2-5eaff1037cb6", "@type": ["FileProcessed", "File", "Item"], "status": "released", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "@type": ["FileFormat", "Item"], "@id": "/file-formats/pairs/", "file_format": "pairs", "display_title": "pairs", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_pairs", "value": {"@id": "/files-processed/4DNFIKLSIQG2/", "accession": "4DNFIKLSIQG2", "display_title": "4DNFIKLSIQG2.pairs.gz", "uuid": "df7b0897-ba77-4c71-a44b-ba5ad364903b", "@type": ["FileProcessed", "File", "Item"], "status": "released", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "@type": ["FileFormat", "Item"], "@id": "/file-formats/pairs/", "file_format": "pairs", "display_title": "pairs", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "input_pairs", "value": {"@id": "/files-processed/4DNFI3D1L78L/", "accession": "4DNFI3D1L78L", "display_title": "4DNFI3D1L78L.pairs.gz", "uuid": "7b1ee5db-cd6d-402c-90c7-aa544ca49c8e", "@type": ["FileProcessed", "File", "Item"], "status": "released", "file_format": {"uuid": "d13d06cf-218e-4f61-aaf0-91f226248b2c", "status": "released", "@type": ["FileFormat", "Item"], "@id": "/file-formats/pairs/", "file_format": "pairs", "display_title": "pairs", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "restriction_file", "value": {"@id": "/files-reference/4DNFIONK4G14/", "accession": "4DNFIONK4G14", "display_title": "4DNFIONK4G14.txt", "uuid": "cb3c293b-b5fe-4f47-9373-a29399ea1edc", "@type": ["FileReference", "File", "Item"], "filename": "mm10_MboI.txt", "status": "released", "file_format": {"uuid": "d13d06cf-218e-4f61-55f0-94f226248b2c", "status": "released", "@type": ["FileFormat", "Item"], "@id": "/file-formats/juicer_format_restriction_site_file/", "file_format": "juicer_format_restriction_site_file", "display_title": "juicer_format_restriction_site_file", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "output_files": [{"workflow_argument_name": "merged_pairs", "value": {"accession": "4DNFIVPL53FC", "@type": ["FileProcessed", "File", "Item"], "status": "released", "uuid": "a3307748-398a-47c9-b42e-87035ff78884", "display_title": "4DNFIVPL53FC.pairs.gz", "@id": "/files-processed/4DNFIVPL53FC/", "file_format": {"file_format": "pairs", "status": "released", "@id": "/file-formats/pairs/", "@type": ["FileFormat", "Item"], "uuid": "d13d06cf-218e-4f61-aaf0-91f226248b2c", "display_title": "pairs", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "hic", "value": {"accession": "4DNFISNIE5FH", "@type": ["FileProcessed", "File", "Item"], "status": "released", "uuid": "67bff264-0b0c-4c5c-9d4d-ff5abef2bbe4", "display_title": "4DNFISNIE5FH.hic", "@id": "/files-processed/4DNFISNIE5FH/", "file_format": {"file_format": "hic", "status": "released", "@id": "/file-formats/hic/", "@type": ["FileFormat", "Item"], "uuid": "d13d11cf-218e-4f61-bbf0-91f226248b2c", "display_title": "hic", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "mcool", "value": {"accession": "4DNFIS5ZK13C", "@type": ["FileProcessed", "File", "Item"], "status": "released", "uuid": "1aa2e865-13b1-47ad-bb05-cd8a4c56c0bf", "display_title": "4DNFIS5ZK13C.mcool", "@id": "/files-processed/4DNFIS5ZK13C/", "file_format": {"file_format": "mcool", "status": "released", "@id": "/file-formats/mcool/", "@type": ["FileFormat", "Item"], "uuid": "d13d06cf-218e-4f61-ccf0-91f226248b2c", "display_title": "mcool", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}, {"workflow_argument_name": "cooler_normvector", "value": {"accession": "4DNFICLC8IU6", "@type": ["FileProcessed", "File", "Item"], "status": "released", "uuid": "5ccac0af-5b5e-4cf0-a2b1-4e7978994f7c", "display_title": "4DNFICLC8IU6.normvector.juicerformat.gz", "@id": "/files-processed/4DNFICLC8IU6/", "file_format": {"file_format": "normvector_juicerformat", "status": "released", "@id": "/file-formats/normvector_juicerformat/", "@type": ["FileFormat", "Item"], "uuid": "d13d06cf-218e-4f61-55f0-94f226118b2c", "display_title": "normvector_juicerformat", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}}], "workflow": {"status": "released", "@type": ["Workflow", "Item"], "uuid": "c9e0e6f7-b0ed-4a42-9466-cadc2dd84df0", "display_title": "Generation of multiresolution Hi-C contact matrices from a set of contact lists 0.2.6 - 4DNWFTKI1QLK", "@id": "/workflows/4DNWFTKI1QLK/", "title": "Generation of multiresolution Hi-C contact matrices from a set of contact lists 0.2.6", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "experiment_sets": [{"uuid": "47beac46-2696-4031-ae99-51608bf7c3d3", "@id": "/experiment-set-replicates/4DNES4GDH4BG/", "accession": "4DNES4GDH4BG", "@type": ["ExperimentSetReplicate", "ExperimentSet", "Item"], "display_title": "4DNES4GDH4BG", "status": "released", "last_modified": {"date_modified": "2024-07-16T06:46:13.301686+00:00"}, "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "pairsqc_table": "https://s3.amazonaws.com/elasticbeanstalk-fourfront-webprod-wfoutput/4DNFIVPL53FC/4DNFIVPL53FC.plot_table.out", "source_experiment_sets": [{"display_title": "4DNES4GDH4BG", "status": "released", "uuid": "47beac46-2696-4031-ae99-51608bf7c3d3", "@type": ["ExperimentSetReplicate", "ExperimentSet", "Item"], "@id": "/experiment-set-replicates/4DNES4GDH4BG/", "principals_allowed": {"view": ["system.Everyone"], "edit": ["group.admin"]}}], "@context": "/terms/", "aggregated-items": {"last_modified": [{"parent": "/experiment-set-replicates/4DNES4GDH4BG/", "embedded_path": "experiment_sets.last_modified", "item": {"date_modified": "2024-07-16T06:46:13.301686+00:00"}}, {"parent": "/files-processed/4DNFIVPL53FC/", "embedded_path": "last_modified", "item": {"date_modified": "2021-05-17T21:47:14.814303+00:00"}}]}, "validation-errors": []}