ImagingPath
3-Mb chr6 (mouse) targeted by oligo probe library, readout oligo library (with Alexa Fluor 750-labeled imaging oligos)

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Sequential DNA FISH in the Alexa Fluor 750 channel. A ~2.8Mb region on chr3 that includes chr3 locus is imaged. Primary oligo probes binding 96 consecutive 30-kb loci are targeted by sequential hybridization of complementary readout oligos, labelled with fluorophore-conjugated imaging oligos.

   March 19th, 2023 at 4:23am

Details

experiment_type 
DNA FISH
aliases 
  1. alistair-boettiger-lab:path_3mb_chr3_tracing_750
file_reference 
  1. 4DNFIXBQGMZW.fasta
  2. 4DNFIZJZZKB5.bed.gz
labeled_probe 
imaging oligos
labels 
  1. Alexa Fluor 750
other_probes 
  1. oligo probe library
  2. readout oligo library
public_release 
April 18th, 2023
target 
  1. 3-Mb chr6 (mouse)
type_labeled_probe 
DNA primer