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  • ExperimentSetReplicate277
    • Lab
    Experiment Type
  • FISH
  • DNA FISH277
    • Dataset
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  • Released277
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    4 Common Properties
     Project
    4DN
     Experiment Category
    Microscopy
     Modifications
    No value
     Set Type
    Replicate
    277 Results
    Title
    Experiment Type
    Biosample
    Dataset
    Condition
    Assay Details
    Lab
    4DNES9BMCFUM
    DNA FISH
    U2OS
    DNA FISH in U2OS
    siTERRA
    Target
    Chromosomes, Telomere DNA (human)
    Huaiying Zhang, CMU
    4DNESBO1XK2L
    DNA FISH
    U2OS
    DNA FISH in U2OS
    siControl
    Target
    Chromosomes, Telomere DNA (human)
    Huaiying Zhang, CMU
    4DNESA84SNKC
    DNA FISH
    F121-9-CASTx129 (Tier 2)
    DNA-FISH in F121-9 cells
    non-NAD BAC probe pPK1003
    Target
    Nucleolus, Chromosomes, GRCm38:15:84216729-84409126 mouse region
    Paul Kaufman, UMMS
    4DNESHGVPOOW
    DNA FISH
    F121-9-CASTx129 (Tier 2)
    DNA-FISH in F121-9 cells
    non-NAD BAC probe pPK1000, IF Ab nuclephosmin
    Target
    Nucleolus, Chromosomes, GRCm38:7:130062900-130222254 mouse region
    Paul Kaufman, UMMS
    4DNESS8BDAG8
    DNA FISH
    F121-9-CASTx129 (Tier 2)
    DNA-FISH in F121-9 cells
    non-NAD BAC probe pPK1000
    Target
    Nucleolus, Chromosomes, GRCm38:7:130062900-130222254 mouse region
    Paul Kaufman, UMMS
    4DNESVHZW7E2
    DNA FISH
    F121-9-CASTx129 (Tier 2)
    DNA-FISH in F121-9 cells
    NAD BAC probe pPK999, IF Ab nucleophosmin
    Target
    Nucleolus, Chromosomes, GRCm38:11:16745166-16937185 mouse region
    Paul Kaufman, UMMS
    4DNESOSJL9CL
    DNA FISH
    F121-9-CASTx129 (Tier 2)
    DNA-FISH in F121-9 cells
    NAD BAC probe pPK999
    Target
    Nucleolus, Chromosomes, GRCm38:11:16745166-16937185 mouse region
    Paul Kaufman, UMMS
    4DNESQ5VF1DW
    DNA FISH
    F121-9-CASTx129 (Tier 2)
    DNA-FISH in F121-9 cells
    NAD BAC probe pPK915
    Target
    Nucleolus, Chromosomes, GRCm38:17:12456384-12690495 mouse region
    Paul Kaufman, UMMS
    4DNES1JL7EKZ
    DNA FISH
    F121-9-CASTx129 (Tier 2)
    DNA-FISH in F121-9 cells
    NAD BAC probe pPK914
    Target
    Nucleolus, Chromosomes, GRCm38:16:95182165-95358805 mouse region
    Paul Kaufman, UMMS
    4DNESLPEFKM4
    DNA FISH
    F121-9-CASTx129 (Tier 2)
    DNA-FISH in F121-9 cells
    non-NAD BAC probe pPK871
    Target
    Nucleolus, Chromosomes, GRCm38:12:110758289-111006192 mouse region
    Paul Kaufman, UMMS
    4DNESF8978DI
    DNA FISH
    F121-9-CASTx129 (Tier 2)
    DNA-FISH in F121-9 cells
    non-NAD BAC probe pPK825
    Target
    Nucleolus, Chromosomes, GRCm38:17:34211624-34393919 mouse region
    Paul Kaufman, UMMS
    4DNESWKPWJD5
    DNA FISH
    IMR-90 (Tier 1)
    SMSN (Barentine et al 2019 bioRxiv)
    LAD/TAD in IMR90
    Target
    GRCh38:5:116144601-116449681 region, Chromosome 22 TADs
    David Baddeley, YALE
    4DNESVDDCXBV
    DNA FISH
    IMR-90 (Tier 1)
    SMSN (Barentine et al 2019 bioRxiv)
    LAD/lamin in IMR90
    Target
    Human chr13 LAD (pool 2), LaminA/C protein
    David Baddeley, YALE
    4DNES5T7JDHC
    DNA FISH
    HFF-hTERT
    DNA FISH on Chr18
    -
    Target
    Chromosomes, GRCh38:18:73778050-73945077 region, GRCh38:18:46316193-46486760 region, GRCh38:18:22075002-22239510 region
    Tom Misteli, NCI
    4DNESE5KS7LQ
    DNA FISH
    HFF-hTERT
    DNA FISH on Chr18
    -
    Target
    Chromosomes, GRCh38:18:48016594-48189106 region, GRCh38:18:34992711-35151964 region, GRCh38:18:22075002-22239510 region
    Tom Misteli, NCI
    4DNESGRBG4EG
    DNA FISH
    HFF-hTERT
    DNA FISH on Chr18
    -
    Target
    Chromosomes, GRCh38:18:73778050-73945077 region, GRCh38:18:46316193-46486760 region, GRCh38:18:62276743-62456847 region
    Tom Misteli, NCI
    4DNES6KEALYM
    DNA FISH
    HFF-hTERT
    DNA FISH on Chr18
    -
    Target
    Chromosomes, GRCh38:18:40596626-40761745 region, GRCh38:18:34992711-35151964 region, GRCh38:18:62276743-62456847 region
    Tom Misteli, NCI
    4DNES8AYJVSH
    DNA FISH
    HFF-hTERT
    DNA FISH on Chr18
    -
    Target
    Chromosomes, GRCh38:18:2535851-2706101 region, GRCh38:18:22075002-22239510 region, GRCh38:18:62276743-62456847 region
    Tom Misteli, NCI
    4DNESOQD2GSC
    DNA FISH
    HFF-hTERT
    DNA FISH on Chr18
    -
    Target
    Chromosomes, GRCh38:18:48016594-48189106 region, GRCh38:17:30541949-30739347 region, GRCh38:18:75525179-75695249 region
    Tom Misteli, NCI
    4DNESKIV62TK
    DNA FISH
    HFF-hTERT
    DNA FISH on Chr18
    -
    Target
    Chromosomes, GRCh38:18:46316193-46486760 region, GRCh38:18:40596626-40761745 region, GRCh38:18:75525179-75695249 region
    Tom Misteli, NCI
    4DNES9CUXTSX
    DNA FISH
    HFF-hTERT
    DNA FISH on Chr18
    -
    Target
    Chromosomes, GRCh38:18:34992711-35151964 region, GRCh38:18:22075002-22239510 region, GRCh38:18:75525179-75695249 region
    Tom Misteli, NCI
    4DNESRYEHAIM
    DNA FISH
    HFF-hTERT
    DNA FISH on Chr18
    -
    Target
    Chromosomes, GRCh38:18:75525179-75695249 region, GRCh38:18:62276743-62456847 region, GRCh38:18:2535851-2706101 region
    Tom Misteli, NCI
    4DNESPMIX8VO
    DNA FISH
    HFF-hTERT
    DNA FISH on Chr18
    -
    Target
    Chromosomes, GRCh38:18:73778050-73945077 region, GRCh38:18:62276743-62456847 region, GRCh38:18:2535851-2706101 region
    Tom Misteli, NCI
    4DNES8UZOSS2
    DNA FISH
    HFF-hTERT
    DNA FISH on Chr18
    -
    Target
    Chromosomes, GRCh38:18:48016594-48189106 region, GRCh38:18:46316193-46486760 region, GRCh38:18:2535851-2706101 region
    Tom Misteli, NCI
    4DNESIDEAM9T
    DNA FISH
    HFF-hTERT
    DNA FISH on Chr18
    -
    Target
    Chromosomes, GRCh38:18:40596626-40761745 region, GRCh38:18:34992711-35151964 region, GRCh38:18:2535851-2706101 region
    Tom Misteli, NCI