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Included Properties

Data Type
  • ExperimentSetReplicate24
  • Experiment Set24
    • Dataset
  • Hi-C on hTert-RPE1 with degron tagged NIBPL18
  • Hi-C on hTert-RPE1 with degron tagged RAD216
    • Sample
  • dTAG-NIPBL hTERT-RPE-1 - clone D715
  • dTAG-NIPBL hTERT-RPE-1 - clone A23
  • dTAG-RAD21 hTERT-RPE-1 - clone B13
  • dTAG-RAD21 hTERT-RPE-1 - clone B33
    • Organ/System
  • ectoderm24
  • eye24
  • sensory system24
    • Set Type
  • Replicate24
    • Dataset Group
  • Hi-C on hTert-RPE-1 with timecourse of NIPBL or Rad21 depletion24
    • Warnings
    16 Common Properties
     Project
    4DN
     Lab
    Jesse Dixon, SALK
     Experiment Category
    Sequencing
     Experiment Type
    Hi-C
     Organism
    Human
     Sample Type
    immortalized cells
     Sample Tier
    Unclassified
     Sample Category
    Tier 2
     Tissue Source
    retinal pigment epithelial cell
     Publication
    Popay TM et al. (2024) doi:10.1101/2024.10.02.616323
     Modifications
    No value
     Treatments
    Chemical
     Assay Details
    Enzyme: Arima - A1, A2
     Center
    OFHHD - Dixon
     Status
    Released
     Commendations
    No value
    Title
    Experiment Type
    Biosample
    Dataset
    Condition
    Assay Details
    Lab
    4DNESEFOMVWG
    in situ Hi-C
    dTAG-RAD21 hTERT-RPE-1 - clone B3
    Hi-C on hTert-RPE1 with degron tagged RAD21
    clone B3 unsynchronized 24 hr dTAG-v1
    Enzyme
    Arima - A1, A2
    Jesse Dixon, SALK
    4DNES6M56K8K
    in situ Hi-C
    dTAG-RAD21 hTERT-RPE-1 - clone B3
    Hi-C on hTert-RPE1 with degron tagged RAD21
    clone B3 unsynchronized 4 hr dTAG-v1
    Enzyme
    Arima - A1, A2
    Jesse Dixon, SALK
    4DNESGBU8XNK
    in situ Hi-C
    dTAG-RAD21 hTERT-RPE-1 - clone B3
    Hi-C on hTert-RPE1 with degron tagged RAD21
    clone B3 unsynchronized 24 hr DMSO control
    Enzyme
    Arima - A1, A2
    Jesse Dixon, SALK
    4DNES4R7Z59B
    in situ Hi-C
    dTAG-RAD21 hTERT-RPE-1 - clone B1
    Hi-C on hTert-RPE1 with degron tagged RAD21
    clone B1 unsynchronized 24 hr dTAG-v1
    Enzyme
    Arima - A1, A2
    Jesse Dixon, SALK
    4DNESDTUFDKO
    in situ Hi-C
    dTAG-RAD21 hTERT-RPE-1 - clone B1
    Hi-C on hTert-RPE1 with degron tagged RAD21
    clone B1 unsynchronized 4 hr dTAG-v1
    Enzyme
    Arima - A1, A2
    Jesse Dixon, SALK
    4DNESQW1ETDQ
    in situ Hi-C
    dTAG-RAD21 hTERT-RPE-1 - clone B1
    Hi-C on hTert-RPE1 with degron tagged RAD21
    clone B1 unsynchronized 24 hr DMSO control
    Enzyme
    Arima - A1, A2
    Jesse Dixon, SALK
    4DNESWL13MAC
    in situ Hi-C
    dTAG-NIPBL hTERT-RPE-1 - clone D7
    Hi-C on hTert-RPE1 with degron tagged NIBPL
    clone D7 unsynchronized 24 hr dTAG-v1
    Enzyme
    Arima - A1, A2
    Jesse Dixon, SALK
    4DNES5XW7Q2Y
    in situ Hi-C
    dTAG-NIPBL hTERT-RPE-1 - clone D7
    Hi-C on hTert-RPE1 with degron tagged NIBPL
    clone D7 mitotic 8 hr post release dTAG-v1
    Enzyme
    Arima - A1, A2
    Jesse Dixon, SALK
    4DNESM6H6XC1
    in situ Hi-C
    dTAG-NIPBL hTERT-RPE-1 - clone D7
    Hi-C on hTert-RPE1 with degron tagged NIBPL
    clone D7 unsynchronized 4 hr dTAG-v1
    Enzyme
    Arima - A1, A2
    Jesse Dixon, SALK
    4DNES5XBWDQ1
    in situ Hi-C
    dTAG-NIPBL hTERT-RPE-1 - clone D7
    Hi-C on hTert-RPE1 with degron tagged NIBPL
    clone D7 mitotic 120 min post release dTAG-v1
    Enzyme
    Arima - A1, A2
    Jesse Dixon, SALK
    4DNES34QKYK9
    in situ Hi-C
    dTAG-NIPBL hTERT-RPE-1 - clone D7
    Hi-C on hTert-RPE1 with degron tagged NIBPL
    clone D7 mitotic 90 min post release dTAG-v1
    Enzyme
    Arima - A1, A2
    Jesse Dixon, SALK
    4DNESZCP76UM
    in situ Hi-C
    dTAG-NIPBL hTERT-RPE-1 - clone D7
    Hi-C on hTert-RPE1 with degron tagged NIBPL
    clone D7 mitotic 60 min post release dTAG-v1
    Enzyme
    Arima - A1, A2
    Jesse Dixon, SALK
    4DNESQQ6O96K
    in situ Hi-C
    dTAG-NIPBL hTERT-RPE-1 - clone D7
    Hi-C on hTert-RPE1 with degron tagged NIBPL
    clone D7 mitotic 30 min post release dTAG-v1
    Enzyme
    Arima - A1, A2
    Jesse Dixon, SALK
    4DNESMFWPHAS
    in situ Hi-C
    dTAG-NIPBL hTERT-RPE-1 - clone D7
    Hi-C on hTert-RPE1 with degron tagged NIBPL
    clone D7 mitotic 0 min post release dTAG-v1
    Enzyme
    Arima - A1, A2
    Jesse Dixon, SALK
    4DNESY8MSJPD
    in situ Hi-C
    dTAG-NIPBL hTERT-RPE-1 - clone D7
    Hi-C on hTert-RPE1 with degron tagged NIBPL
    clone D7 unsynchronized 24 hr DMSO control
    Enzyme
    Arima - A1, A2
    Jesse Dixon, SALK
    4DNESWHWZAAC
    in situ Hi-C
    dTAG-NIPBL hTERT-RPE-1 - clone D7
    Hi-C on hTert-RPE1 with degron tagged NIBPL
    clone D7 mitotic 8 hr post release DMSO control
    Enzyme
    Arima - A1, A2
    Jesse Dixon, SALK
    4DNEST7Q4VZ4
    in situ Hi-C
    dTAG-NIPBL hTERT-RPE-1 - clone D7
    Hi-C on hTert-RPE1 with degron tagged NIBPL
    clone D7 mitotic 120 min post release DMSO control
    Enzyme
    Arima - A1, A2
    Jesse Dixon, SALK
    4DNESHHMSZES
    in situ Hi-C
    dTAG-NIPBL hTERT-RPE-1 - clone D7
    Hi-C on hTert-RPE1 with degron tagged NIBPL
    clone D7 mitotic 90 min post release DMSO control
    Enzyme
    Arima - A1, A2
    Jesse Dixon, SALK
    4DNESM9IC4VO
    in situ Hi-C
    dTAG-NIPBL hTERT-RPE-1 - clone D7
    Hi-C on hTert-RPE1 with degron tagged NIBPL
    clone D7 mitotic 60 min post release DMSO control
    Enzyme
    Arima - A1, A2
    Jesse Dixon, SALK
    4DNESS4DPTVF
    in situ Hi-C
    dTAG-NIPBL hTERT-RPE-1 - clone D7
    Hi-C on hTert-RPE1 with degron tagged NIBPL
    clone D7 mitotic 30 min post release DMSO control
    Enzyme
    Arima - A1, A2
    Jesse Dixon, SALK
    4DNESBKGA5V9
    in situ Hi-C
    dTAG-NIPBL hTERT-RPE-1 - clone D7
    Hi-C on hTert-RPE1 with degron tagged NIBPL
    clone D7 mitotic 0 min post release DMSO control
    Enzyme
    Arima - A1, A2
    Jesse Dixon, SALK
    4DNES54VNJOV
    in situ Hi-C
    dTAG-NIPBL hTERT-RPE-1 - clone A2
    Hi-C on hTert-RPE1 with degron tagged NIBPL
    clone A2 unsynchronized 24 hr dTAG-v1
    Enzyme
    Arima - A1, A2
    Jesse Dixon, SALK
    4DNESRAMX7ZU
    in situ Hi-C
    dTAG-NIPBL hTERT-RPE-1 - clone A2
    Hi-C on hTert-RPE1 with degron tagged NIBPL
    clone A2 unsynchronized 4 hr dTAG-v1
    Enzyme
    Arima - A1, A2
    Jesse Dixon, SALK
    4DNES6E25MDL
    in situ Hi-C
    dTAG-NIPBL hTERT-RPE-1 - clone A2
    Hi-C on hTert-RPE1 with degron tagged NIBPL
    clone A2 unsynchronized 24 hr DMSO control
    Enzyme
    Arima - A1, A2
    Jesse Dixon, SALK
    - fin -