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Included Properties

Data Type
  • ExperimentSetReplicate12
  • Experiment Set12
    • Dataset
  • Hi-C on WTC-11 cardiac differention timecourse12
  • Immunofluorescence on synchronyzed HeLa cells135
  • No value100
  • DNA FISH on Chr1771
  • DNA FISH on Chr470
  • Hi-C on RAD21-AID tagged HCT-11658
  • RNA-seq on monocytes from b-ALL patient53
  • DNA FISH on Chr152
  • SPT on U2OS cells for Spot-On analysis45
  • ATAC-seq on monocytes from b-ALL patient44
    • View 90 More1296
    Sample Type
    Sample Category
    Sample
    Organ/System
    Tissue Source
    Set Type
  • Replicate12
    • Warnings
    13 Common Properties
     Project
    4DN
     Lab
    Benoit Bruneau, UCSF
     Experiment Category
    Sequencing
     Experiment Type
    Hi-C
     Organism
    Human
     Sample Tier
    Unclassified
     Publication
    Grant ZL et al. (2025) PMID:39829922
     Modifications
    No value
     Treatments
    No value
     Assay Details
    Enzyme: DdeI and DpnII
     Center
    Bruneau
     Status
    Released
     Commendations
    No value
    Title
    Experiment Type
    Biosample
    Dataset
    Condition
    Assay Details
    Lab
    4DNESDVZJW63
    in situ Hi-C
    WTC-11 differentiated to cardiac muscle cell
    Hi-C on WTC-11 cardiac differention timecourse
    ventricular - 23 days
    Enzyme
    DdeI and DpnII
    Benoit Bruneau, UCSF
    4DNES7CDN1M9
    in situ Hi-C
    WTC-11 differentiated to cardiac muscle cell
    Hi-C on WTC-11 cardiac differention timecourse
    ventricular - 11 days
    Enzyme
    DdeI and DpnII
    Benoit Bruneau, UCSF
    4DNES7R8BYB1
    in situ Hi-C
    WTC-11 differentiated to primitive cardiac myocyte
    Hi-C on WTC-11 cardiac differention timecourse
    ventricular - 6 days
    Enzyme
    DdeI and DpnII
    Benoit Bruneau, UCSF
    4DNESNRK4ZL7
    in situ Hi-C
    WTC-11 differentiated to cardiogenic mesoderm
    Hi-C on WTC-11 cardiac differention timecourse
    ventricular - 4 days
    Enzyme
    DdeI and DpnII
    Benoit Bruneau, UCSF
    4DNES4P4UOAZ
    in situ Hi-C
    WTC-11 differentiated to cardiogenic mesoderm
    Hi-C on WTC-11 cardiac differention timecourse
    ventricular - 2 days
    Enzyme
    DdeI and DpnII
    Benoit Bruneau, UCSF
    4DNESCXE1LCX
    in situ Hi-C
    WTC-11 differentiated to cardiac muscle cell
    Hi-C on WTC-11 cardiac differention timecourse
    atrial - 45 days
    Enzyme
    DdeI and DpnII
    Benoit Bruneau, UCSF
    4DNESR9IH796
    in situ Hi-C
    WTC-11 differentiated to cardiac muscle cell
    Hi-C on WTC-11 cardiac differention timecourse
    atrial - 20 days
    Enzyme
    DdeI and DpnII
    Benoit Bruneau, UCSF
    4DNESAMIZR39
    in situ Hi-C
    WTC-11 differentiated to cardiac muscle cell
    Hi-C on WTC-11 cardiac differention timecourse
    atrial - 11 days
    Enzyme
    DdeI and DpnII
    Benoit Bruneau, UCSF
    4DNESW2MTVKJ
    in situ Hi-C
    WTC-11 differentiated to primitive cardiac myocyte
    Hi-C on WTC-11 cardiac differention timecourse
    atrial - 6 days
    Enzyme
    DdeI and DpnII
    Benoit Bruneau, UCSF
    4DNES4T1TMBA
    in situ Hi-C
    WTC-11 differentiated to cardiogenic mesoderm
    Hi-C on WTC-11 cardiac differention timecourse
    atrial - 4 days
    Enzyme
    DdeI and DpnII
    Benoit Bruneau, UCSF
    4DNES4UH8UR5
    in situ Hi-C
    WTC-11 differentiated to cardiogenic mesoderm
    Hi-C on WTC-11 cardiac differention timecourse
    atrial - 2 days
    Enzyme
    DdeI and DpnII
    Benoit Bruneau, UCSF
    4DNESG6I8TG1
    in situ Hi-C
    WTC-11
    Hi-C on WTC-11 cardiac differention timecourse
    undifferentiated
    Enzyme
    DdeI and DpnII
    Benoit Bruneau, UCSF
    - fin -