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Included Properties

Data Type
  • ExperimentSetReplicate19
  • Experiment Set19
    • Dataset
  • Liquified Chromatin Hi-C on K562 cells19
  • Immunofluorescence on synchronyzed HeLa cells135
  • No value100
  • DNA FISH on Chr1771
  • DNA FISH on Chr470
  • Hi-C on RAD21-AID tagged HCT-11658
  • RNA-seq on monocytes from b-ALL patient53
  • DNA FISH on Chr152
  • SPT on U2OS cells for Spot-On analysis45
  • ATAC-seq on monocytes from b-ALL patient44
    • View 90 More1289
    Assay Details
  • Enzyme: DpnII14
  • Enzyme: HindIII5
    • Set Type
  • Replicate19
    • Warnings
    17 Common Properties
     Project
    4DN
     Lab
    Job Dekker, UMMS
     Experiment Category
    Sequencing
     Experiment Type
    Hi-C
     Organism
    Human
     Sample Type
    immortalized cells
     Sample Tier
    Tier 2
     Sample Category
    Tier 2
     Sample
    K562 (Tier 2)
     Organ/System
    No value
     Tissue Source
    blood cell
     Publication
    Belaghzal H et al. (2021) PMID:33574602
     Modifications
    No value
     Treatments
    No value
     Center
    NOFIC - Dekker
     Status
    Released
     Commendations
    No value
    Title
    Experiment Type
    Biosample
    Dataset
    Condition
    Assay Details
    Lab
    4DNESVZ6QH33
    in situ Hi-C
    K562 (Tier 2)
    Liquified Chromatin Hi-C on K562 cells
    Whole cells, no pre-digestion, digestion with HindIII
    Enzyme
    HindIII
    Job Dekker, UMMS
    4DNESR93N4E3
    in situ Hi-C
    K562 (Tier 2)
    Liquified Chromatin Hi-C on K562 cells
    Purified nuclei, no pre-digestion, digestion with HindIII
    Enzyme
    HindIII
    Job Dekker, UMMS
    4DNES9J6QJQS
    in situ Hi-C
    K562 (Tier 2)
    Liquified Chromatin Hi-C on K562 cells
    Purified nuclei, pre-digestion with buffer for 4 hours, digestion with HindIII
    Enzyme
    HindIII
    Job Dekker, UMMS
    4DNESQICH2XW
    in situ Hi-C
    K562 (Tier 2)
    Liquified Chromatin Hi-C on K562 cells
    Purified nuclei, pre-digestion with DpnII for 4 hours, digestion with HindIII
    Enzyme
    HindIII
    Job Dekker, UMMS
    4DNES1E3ET5M
    in situ Hi-C
    K562 (Tier 2)
    Liquified Chromatin Hi-C on K562 cells
    Purified nuclei, pre-digestion with HindIII for 4 hours, digestion with HindIII
    Enzyme
    HindIII
    Job Dekker, UMMS
    4DNESQV6Y4JL
    in situ Hi-C
    K562 (Tier 2)
    Liquified Chromatin Hi-C on K562 cells
    Purified nuclei, pre-digestion with buffer for 4 hours, digestion with DpnII
    Enzyme
    DpnII
    Job Dekker, UMMS
    4DNESFM66XDL
    in situ Hi-C
    K562 (Tier 2)
    Liquified Chromatin Hi-C on K562 cells
    Purified nuclei, pre-digestion with DpnII for 5 minutes, digestion with DpnII
    Enzyme
    DpnII
    Job Dekker, UMMS
    4DNESZUWCRVN
    in situ Hi-C
    K562 (Tier 2)
    Liquified Chromatin Hi-C on K562 cells
    Purified nuclei, pre-digestion with DpnII for 1 hours, digestion with DpnII
    Enzyme
    DpnII
    Job Dekker, UMMS
    4DNESCQRIZ7D
    in situ Hi-C
    K562 (Tier 2)
    Liquified Chromatin Hi-C on K562 cells
    Purified nuclei, pre-digestion with DpnII for 2 hours, digestion with DpnII
    Enzyme
    DpnII
    Job Dekker, UMMS
    4DNESLVTLWPX
    in situ Hi-C
    K562 (Tier 2)
    Liquified Chromatin Hi-C on K562 cells
    Purified nuclei, pre-digestion with DpnII for 3 hours, digestion with DpnII
    Enzyme
    DpnII
    Job Dekker, UMMS
    4DNESF17LNZE
    in situ Hi-C
    K562 (Tier 2)
    Liquified Chromatin Hi-C on K562 cells
    Purified nuclei, pre-digestion with DpnII for 4 hours, digestion with DpnII
    Enzyme
    DpnII
    Job Dekker, UMMS
    4DNESSH9ICEW
    in situ Hi-C
    K562 (Tier 2)
    Liquified Chromatin Hi-C on K562 cells
    Purified nuclei, pre-digestion with DpnII for 16 hours, digestion with DpnII
    Enzyme
    DpnII
    Job Dekker, UMMS
    4DNESC23ZYOF
    in situ Hi-C
    K562 (Tier 2)
    Liquified Chromatin Hi-C on K562 cells
    Purified nuclei, pre-digestion with HindIII for 4 hours, digestion with DpnII
    Enzyme
    DpnII
    Job Dekker, UMMS
    4DNES54GS5KI
    in situ Hi-C
    K562 (Tier 2)
    Liquified Chromatin Hi-C on K562 cells
    Purified nuclei, pre-digestion with buffer for 5 minutes, digestion with DpnII
    Enzyme
    DpnII
    Job Dekker, UMMS
    4DNESPXSO8GB
    in situ Hi-C
    K562 (Tier 2)
    Liquified Chromatin Hi-C on K562 cells
    Purified nuclei, pre-digestion with buffer for 8 hours, digestion with DpnII
    Enzyme
    DpnII
    Job Dekker, UMMS
    4DNESHJVC7MP
    in situ Hi-C
    K562 (Tier 2)
    Liquified Chromatin Hi-C on K562 cells
    Purified nuclei, pre-digestion with buffer for 16 hours, digestion with DpnII
    Enzyme
    DpnII
    Job Dekker, UMMS
    4DNESMG7JML8
    in situ Hi-C
    K562 (Tier 2)
    Liquified Chromatin Hi-C on K562 cells
    Purified nuclei, pre-digestion with buffer for 24 hours, digestion with DpnII
    Enzyme
    DpnII
    Job Dekker, UMMS
    4DNESYVC49SD
    in situ Hi-C
    K562 (Tier 2)
    Liquified Chromatin Hi-C on K562 cells
    Purified nuclei, pre-digestion with DpnII for 24 hours, digestion with DpnII
    Enzyme
    DpnII
    Job Dekker, UMMS
    4DNEST7Y7S69
    in situ Hi-C
    K562 (Tier 2)
    Liquified Chromatin Hi-C on K562 cells
    Purified nuclei, pre-digestion with DpnII for 8 hours, digestion with DpnII
    Enzyme
    DpnII
    Job Dekker, UMMS
    - fin -