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Included Properties

Data Type
  • ExperimentSetReplicate18
  • Experiment Set18
    • Dataset
  • Hi-C on HeLa cells - protocol variations18
  • Immunofluorescence on synchronyzed HeLa cells135
  • No value100
  • DNA FISH on Chr1771
  • DNA FISH on Chr470
  • Hi-C on RAD21-AID tagged HCT-11658
  • RNA-seq on monocytes from b-ALL patient53
  • DNA FISH on Chr152
  • SPT on U2OS cells for Spot-On analysis45
  • ATAC-seq on monocytes from b-ALL patient44
    • View 90 More1290
    Organ/System
  • mesoderm18
  • reproductive system18
    • Treatments
    Assay Details
    Set Type
  • Replicate18
    • 16 Common Properties
     Project
    4DN
     Lab
    Job Dekker, UMMS
     Experiment Category
    Sequencing
     Experiment Type
    Hi-C
     Organism
    Human
     Sample Type
    immortalized cells
     Sample Tier
    Unclassified
     Sample Category
    Other
     Sample
    HeLa-S3
     Tissue Source
    uterine cervix
     Publication
    Akgol Oksuz B et al. (2021) PMID:34480151
     Modifications
    No value
     Center
    NOFIC - Dekker
     Status
    Released
     Commendations
    No value
     Warnings
    Replicate Numbers
    Title
    Experiment Type
    Biosample
    Dataset
    Condition
    Assay Details
    Lab
    4DNESPACPCP4
    in situ Hi-C
    HeLa-S3
    Hi-C on HeLa cells - protocol variations
    Formaldehyde, HindIII, non synchronized
    Enzyme
    HindIII
    Job Dekker, UMMS
    4DNESADA8GV3
    in situ Hi-C
    HeLa-S3
    Hi-C on HeLa cells - protocol variations
    Formaldehyde, DpnII, non synchronized
    Enzyme
    DpnII
    Job Dekker, UMMS
    4DNESGTSE6RJ
    in situ Hi-C
    HeLa-S3
    Hi-C on HeLa cells - protocol variations
    Formaldehyde+EGS, HindIII, non synchronized
    Enzyme
    HindIII
    Job Dekker, UMMS
    4DNES7N27U89
    in situ Hi-C
    HeLa-S3
    Hi-C on HeLa cells - protocol variations
    Formaldehyde+EGS, DpnII, non synchronized
    Enzyme
    DpnII
    Job Dekker, UMMS
    4DNES61ZK6S8
    in situ Hi-C
    HeLa-S3
    Hi-C on HeLa cells - protocol variations
    Formaldehyde+DSG, HindIII, non synchronized
    Enzyme
    HindIII
    Job Dekker, UMMS
    4DNESOS3TILT
    in situ Hi-C
    HeLa-S3
    Hi-C on HeLa cells - protocol variations
    Formaldehyde+DSG, DpnII, non synchronized
    Enzyme
    DpnII
    Job Dekker, UMMS
    4DNESEDV9YMX
    in situ Hi-C
    HeLa-S3
    Hi-C on HeLa cells - protocol variations
    Formaldehyde, HindIII, mitosis
    Enzyme
    HindIII
    Job Dekker, UMMS
    4DNES6UJHBNW
    in situ Hi-C
    HeLa-S3
    Hi-C on HeLa cells - protocol variations
    Formaldehyde, DpnII, mitosis
    Enzyme
    DpnII
    Job Dekker, UMMS
    4DNESZGE3UM2
    in situ Hi-C
    HeLa-S3
    Hi-C on HeLa cells - protocol variations
    Formaldehyde+EGS, HindIII, mitosis
    Enzyme
    HindIII
    Job Dekker, UMMS
    4DNES25BK8CM
    in situ Hi-C
    HeLa-S3
    Hi-C on HeLa cells - protocol variations
    Formaldehyde+EGS, DpnII, mitosis
    Enzyme
    DpnII
    Job Dekker, UMMS
    4DNESH5M9J3U
    in situ Hi-C
    HeLa-S3
    Hi-C on HeLa cells - protocol variations
    Formaldehyde+DSG, HindIII, mitosis
    Enzyme
    HindIII
    Job Dekker, UMMS
    4DNESCWSXLYD
    in situ Hi-C
    HeLa-S3
    Hi-C on HeLa cells - protocol variations
    Formaldehyde+DSG, DpnII, mitosis
    Enzyme
    DpnII
    Job Dekker, UMMS
    4DNESSDZTQRB
    in situ Hi-C
    HeLa-S3
    Hi-C on HeLa cells - protocol variations
    Formaldehyde, HindIII, G1 phase
    Enzyme
    HindIII
    Job Dekker, UMMS
    4DNESTLXFJLK
    in situ Hi-C
    HeLa-S3
    Hi-C on HeLa cells - protocol variations
    Formaldehyde, DpnII, G1 phase
    Enzyme
    DpnII
    Job Dekker, UMMS
    4DNES8I4EVFL
    in situ Hi-C
    HeLa-S3
    Hi-C on HeLa cells - protocol variations
    Formaldehyde+EGS, HindIII, G1 phase
    Enzyme
    HindIII
    Job Dekker, UMMS
    4DNESAOMA6X5
    in situ Hi-C
    HeLa-S3
    Hi-C on HeLa cells - protocol variations
    Formaldehyde+EGS, DpnII, G1 phase
    Enzyme
    DpnII
    Job Dekker, UMMS
    4DNESNRILSOK
    in situ Hi-C
    HeLa-S3
    Hi-C on HeLa cells - protocol variations
    Formaldehyde+DSG, HindIII, G1 phase
    Enzyme
    HindIII
    Job Dekker, UMMS
    4DNESCMQDOWS
    in situ Hi-C
    HeLa-S3
    Hi-C on HeLa cells - protocol variations
    Formaldehyde+DSG, DpnII, G1 phase
    Enzyme
    DpnII
    Job Dekker, UMMS
    - fin -