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Included Properties

Data Type
  • ExperimentSetReplicate21
  • Experiment Set21
    • Dataset
  • Hi-C on mouse cerebellar granule neurons21
  • Immunofluorescence on synchronyzed HeLa cells135
  • No value100
  • DNA FISH on Chr1771
  • DNA FISH on Chr470
  • Hi-C on RAD21-AID tagged HCT-11658
  • RNA-seq on monocytes from b-ALL patient53
  • DNA FISH on Chr152
  • SPT on U2OS cells for Spot-On analysis45
  • ATAC-seq on monocytes from b-ALL patient44
    • View 90 More1287
    Sample
    Organ/System
    Set Type
  • Replicate21
    • Warnings
    16 Common Properties
     Project
    4DN
     Lab
    Tomoko Yamada, NW
     Experiment Category
    Sequencing
     Experiment Type
    Hi-C
     Organism
    Mouse
     Sample Type
    primary cells
     Sample Tier
    Unclassified
     Sample Category
    Primary Cells
     Tissue Source
    cerebellar granule cell
     Publication
    No value
     Modifications
    Crispr
     Treatments
    No value
     Assay Details
    Enzyme: MboI
     Center
    Yamada
     Status
    Released
     Commendations
    No value
    Title
    Experiment Type
    Biosample
    Dataset
    Condition
    Assay Details
    Lab
    4DNESXP5VE8C
    in situ Hi-C
    cerebellar granule neuron - 28 days old
    Hi-C on mouse cerebellar granule neurons
    28 day old neurons - Rad21 KD
    Enzyme
    MboI
    Tomoko Yamada, NW
    4DNESV6G9MAE
    in situ Hi-C
    cerebellar granule neuron - 28 days old
    Hi-C on mouse cerebellar granule neurons
    28 day old neurons - Brd2 KD
    Enzyme
    MboI
    Tomoko Yamada, NW
    4DNESRR9GN9U
    in situ Hi-C
    cerebellar granule neuron - 14 days old
    Hi-C on mouse cerebellar granule neurons
    14 day old neurons - Etv1 KD
    Enzyme
    MboI
    Tomoko Yamada, NW
    4DNES2AYZEI5
    in situ Hi-C
    cerebellar granule neuron - 8 days old
    Hi-C on mouse cerebellar granule neurons
    8 day old neurons - Wapl KD
    Enzyme
    MboI
    Tomoko Yamada, NW
    4DNESCDQ9OV3
    in situ Hi-C
    cerebellar granule neuron - 8 days old
    Hi-C on mouse cerebellar granule neurons
    8 day old neurons - Tob2b KD
    Enzyme
    MboI
    Tomoko Yamada, NW
    4DNESVF2KOT8
    in situ Hi-C
    cerebellar granule neuron - 8 days old
    Hi-C on mouse cerebellar granule neurons
    8 day old neurons - Top1/Tob2b KD
    Enzyme
    MboI
    Tomoko Yamada, NW
    4DNES6OE58QT
    in situ Hi-C
    cerebellar granule neuron - 8 days old
    Hi-C on mouse cerebellar granule neurons
    8 day old neurons - Top1 KD
    Enzyme
    MboI
    Tomoko Yamada, NW
    4DNESKJRLHT9
    in situ Hi-C
    cerebellar granule neuron - 8 days old
    Hi-C on mouse cerebellar granule neurons
    8 day old neurons - Ep300 KD
    Enzyme
    MboI
    Tomoko Yamada, NW
    4DNESIYKZ3BV
    in situ Hi-C
    cerebellar granule neuron - 8 days old
    Hi-C on mouse cerebellar granule neurons
    8 day old neurons - Nup153 KD
    Enzyme
    MboI
    Tomoko Yamada, NW
    4DNESXKNCJZL
    in situ Hi-C
    cerebellar granule neuron - 8 days old
    Hi-C on mouse cerebellar granule neurons
    8 day old neurons - Med1 KD
    Enzyme
    MboI
    Tomoko Yamada, NW
    4DNES9T4Q5WH
    in situ Hi-C
    cerebellar granule neuron - 8 days old
    Hi-C on mouse cerebellar granule neurons
    8 day old neurons - Lmna KD
    Enzyme
    MboI
    Tomoko Yamada, NW
    4DNESUWNG5PW
    in situ Hi-C
    cerebellar granule neuron - 8 days old
    Hi-C on mouse cerebellar granule neurons
    8 day old neurons - Etv1 KD
    Enzyme
    MboI
    Tomoko Yamada, NW
    4DNESMQOL4MV
    in situ Hi-C
    cerebellar granule neuron - 8 days old
    Hi-C on mouse cerebellar granule neurons
    8 day old neurons - Brd4 KD
    Enzyme
    MboI
    Tomoko Yamada, NW
    4DNESGES41I6
    in situ Hi-C
    cerebellar granule neuron - 28 days old
    Hi-C on mouse cerebellar granule neurons
    28 day old neurons - control
    Enzyme
    MboI
    Tomoko Yamada, NW
    4DNESH3GQ3QH
    in situ Hi-C
    cerebellar granule neuron - 14 days old
    Hi-C on mouse cerebellar granule neurons
    14 day old neurons - control
    Enzyme
    MboI
    Tomoko Yamada, NW
    4DNESMTWV2TK
    in situ Hi-C
    cerebellar granule neuron - 9 days old
    Hi-C on mouse cerebellar granule neurons
    9 day old neurons - control
    Enzyme
    MboI
    Tomoko Yamada, NW
    4DNESFUJBYWO
    in situ Hi-C
    cerebellar granule neuron - 8 days old
    Hi-C on mouse cerebellar granule neurons
    8 day old neurons - control
    Enzyme
    MboI
    Tomoko Yamada, NW
    4DNES63I1U23
    in situ Hi-C
    cerebellar granule neuron - 7 days old
    Hi-C on mouse cerebellar granule neurons
    7 day old neurons - control
    Enzyme
    MboI
    Tomoko Yamada, NW
    4DNES9CT9FCL
    in situ Hi-C
    cerebellar granule neuron - 4 days old
    Hi-C on mouse cerebellar granule neurons
    4 day old neurons - control
    Enzyme
    MboI
    Tomoko Yamada, NW
    4DNESIDMDPEE
    in situ Hi-C
    cerebellar granule neuron - 2 days old
    Hi-C on mouse cerebellar granule neurons
    2 day old neurons - control
    Enzyme
    MboI
    Tomoko Yamada, NW
    4DNESV4RVCNQ
    in situ Hi-C
    cerebellar granule neuron - 1 day old
    Hi-C on mouse cerebellar granule neurons
    1 day old neurons - control
    Enzyme
    MboI
    Tomoko Yamada, NW
    - fin -